Plant FIBer expression Database

Potri.003G169300 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G67320 664 / 0 EMB2813 EMBRYO DEFECTIVE 2813, DNA primase, large subunit family (.1.2.3)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.017G053801
[exp]
116 / 3e-31 AT1G67320 108 / 6e-29 EMBRYO DEFECTIVE 2813, DNA primase, large subunit family (.1.2.3)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10000602
[exp]
730 / 0 AT1G67320 682 / 0.0 EMBRYO DEFECTIVE 2813, DNA primase, large subunit family (.1.2.3)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0242 DNA_primase_lrg PF04104 DNA_primase_lrg Eukaryotic and archaeal DNA primase, large subunit
Representative CDS sequence
>Potri.003G169300.2 pacid=42787279 polypeptide=Potri.003G169300.2.p locus=Potri.003G169300 ID=Potri.003G169300.2.v4.1 annot-version=v4.1
ATGGAGATAGTCAAGCCTCAATGGAAGAAACCTCCTCCATCTGCAAACGACGTAGTTTCCACCCTCCCTCTCTACCGCTCCGCCCCCCCTCTCGAAGTCA
GATTGGAAGATTTCGAGCTCTACGCCATCGATCGCCTCCGCGTTTTAAAAGGTGTATCTGACGGACTTTCTCGCGGAAAAAGACCGGAAGAAATGGAGAA
ATTAGTAAATGATTTGTGGAAAGCAAATATGAGGCATCCACTGCCATCTGAAGTTACTAACAAAGATATCATATCTCACTTCGTTTTACGTCTCGTCTAT
TGTAGAACAGAGGAGCTGAGGAAATGGTTCCTTTCCAATGAGATTGCACTTTTTAGATACAGATTTCGGCTTCTATCACCCGAAGCTCAGAGGTTGCTTA
TGGCCGAGTTTGATCTTCCATACAAGCCTGTTACCACTGCAGAATTTGAGGGTGTAAAGGAAAAACTGCATCTAGTTGCCCGATCAACTGGTCAGCTTAA
ACCCACTGCATCTGATGCCATATTCTACAAGGTACCATTTGAAGAAGTTCCTGAACTTGTGGCTGGTCGTAGAGTCTTCATCTGCAAAGGCTATGCTTAT
GTTGCTATGAATCAGGTTGTTTCCCTTGTTGTTACCCAGTTCCGCGGTCTTCTATCAAAAGCACTTGTTCTAACAAACAGAAAATGGACATCTACCATCA
GAGAACAAGAGAAGGATCGCCTAACTCCTATCGTGGAAACCCTATGCACAAGCTATCTGGGTCCTGACTATTCTCAGCCCAAAGAATTTGCTGAAGTATC
AATTAAAGACATTGACCAAGTAGCTAAGAGTTCATTTCCCCTGTGCATGCGTCACCTGTTTGAAAAACTCAGAGAAGATCATCATTTAAAGCATGGAGGG
AGGATGCAATTGGGTCTCTTTCTCAAGGGTGTTGGATTGAAATTAGATGACGCTCTTGCATTCTGGAAAGCAGAGTTCTCCCAAAAGGTTGGAGCTGAGA
GGTTTGACAAAGAATATGCATACAGCATTCGCCACAATTATGGAAGAGAAGGGAAGAGAACAGATTATACTCCTTATTCCTGTCAAAAAATAATCTCATC
AACTCCTGGTGTCGGAGATCATCATGGTTGTCCCTATCGACATTTCAGTGAGGAAAACTTGAGGGCTGCACTCAGCAGAATGGGTGTAAATAGTGGTGAA
ATGGAGAATGTAATGGATAAAGTGCGAAACAGACATTATCAGTTGGCTTGCACGTTGACATTTGAATCCATTCATGGTTCGTCATATGATGCTGGGATTA
ATCATCCTAACCAATACTTCAGTGACAGCCAAAAGTTTTTCAAATCTAAGAACAATCCCTCTGGACAAGGAGAACCTTTGGACGACCGGTCACCTATATA
G
AA sequence
>Potri.003G169300.2 pacid=42787279 polypeptide=Potri.003G169300.2.p locus=Potri.003G169300 ID=Potri.003G169300.2.v4.1 annot-version=v4.1
MEIVKPQWKKPPPSANDVVSTLPLYRSAPPLEVRLEDFELYAIDRLRVLKGVSDGLSRGKRPEEMEKLVNDLWKANMRHPLPSEVTNKDIISHFVLRLVY
CRTEELRKWFLSNEIALFRYRFRLLSPEAQRLLMAEFDLPYKPVTTAEFEGVKEKLHLVARSTGQLKPTASDAIFYKVPFEEVPELVAGRRVFICKGYAY
VAMNQVVSLVVTQFRGLLSKALVLTNRKWTSTIREQEKDRLTPIVETLCTSYLGPDYSQPKEFAEVSIKDIDQVAKSSFPLCMRHLFEKLREDHHLKHGG
RMQLGLFLKGVGLKLDDALAFWKAEFSQKVGAERFDKEYAYSIRHNYGREGKRTDYTPYSCQKIISSTPGVGDHHGCPYRHFSEENLRAALSRMGVNSGE
MENVMDKVRNRHYQLACTLTFESIHGSSYDAGINHPNQYFSDSQKFFKSKNNPSGQGEPLDDRSPI

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G67320 EMB2813 EMBRYO DEFECTIVE 2813, DNA pri... Potri.003G169300
[exp]
0 1
AT3G56870 unknown protein Potri.014G181200
[exp]
2.44 0.8757
AT4G21070 ATBRCA1 ARABIDOPSIS THALIANA BREAST CA... Potri.001G358100
[exp]
4.24 0.8687 Pt-ATBRCA1.1
AT4G29910 EMB2798, ORC5, ... EMBRYO DEFECTIVE 2798, origin ... Potri.014G085900
[exp]
4.89 0.8672
AT3G18524 ATMSH2, MSH2 MUTS homolog 2 (.1) Potri.012G060000
[exp]
4.89 0.8649 Pt-MSH2.1
AT3G57290 ATINT6, ATEIF3E... eukaryotic translation initiat... Potri.016G043800
[exp]
8.24 0.7606 EIF3.3
AT2G40550 ETG1 E2F target gene 1 (.1) Potri.019G056200
[exp]
8.83 0.8412
AT1G47230 CYCA3;4 CYCLIN A3;4 (.1.2) Potri.002G121500
[exp]
9.21 0.8540 CYCA3.1
AT5G57230 Thioredoxin superfamily protei... Potri.006G076300
[exp]
10.39 0.7532
AT2G07690 MCM5 MINICHROMOSOME MAINTENANCE 5, ... Potri.018G112800
[exp]
11.00 0.7841
AT5G59970 Histone superfamily protein (.... Potri.007G013500
[exp]
13.26 0.8137 HFO909

Potri.003G169300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.