Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G50570 163 / 2e-47 SBP SPL13, SPL13A SQUAMOSA PROMOTER-BINDING PROTEIN LIKE 13, Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (.1), Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (.2) AT5G50670 163 / 2e-47 SBP SPL13B SQUAMOSA PROMOTER-BINDING PROTEIN LIKE 13B, SQUAMOSA PROMOTER-BINDING PROTEIN LIKE 13, Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (.1) AT1G76580 138 / 4e-36 SBP SPL16 Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (.1) AT1G27370 130 / 6e-35 SBP SPL10 squamosa promoter binding protein-like 10 (.1.2.3.4) AT1G20980 133 / 1e-34 SBP ATSPL14, SPL1R2, FBR6, SPL14 squamosa promoter binding protein-like 14 (.1) AT3G60030 131 / 5e-34 SBP SPL12 squamosa promoter-binding protein-like 12 (.1) AT2G42200 124 / 1e-32 SBP SPL9, AtSPL9 squamosa promoter binding protein-like 9 (.1) AT2G47070 126 / 3e-32 SBP SPL1 squamosa promoter binding protein-like 1 (.1) AT1G53160 117 / 4e-32 SBP SPL4 squamosa promoter binding protein-like 4 (.1.2) AT1G69170 122 / 1e-31 SBP SPL6 Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G058600 [exp] 535 / 0 AT5G50570 164 / 3e-47 SQUAMOSA PROMOTER-BINDING PROTEIN LIKE 13, Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (.1), Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (.2) Potri.015G098900 [exp] 242 / 1e-77 AT5G50570 233 / 1e-73 SQUAMOSA PROMOTER-BINDING PROTEIN LIKE 13, Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (.1), Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (.2) Potri.012G100700 [exp] 219 / 2e-69 AT5G50570 222 / 6e-70 SQUAMOSA PROMOTER-BINDING PROTEIN LIKE 13, Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (.1), Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (.2) Potri.008G097900 [exp] 138 / 7e-37 AT1G69170 169 / 2e-47 Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (.1) Potri.018G149900 [exp] 137 / 1e-36 AT5G43270 187 / 1e-54 squamosa promoter binding protein-like 2 (.1.2.3) Potri.002G002400 [exp] 137 / 6e-36 AT1G20980 970 / 0.0 squamosa promoter binding protein-like 14 (.1) Potri.005G258700 [exp] 135 / 2e-35 AT1G20980 966 / 0.0 squamosa promoter binding protein-like 14 (.1) Potri.008G098600 [exp] 131 / 7e-34 AT2G47070 833 / 0.0 squamosa promoter binding protein-like 1 (.1) Potri.001G055900 [exp] 128 / 9e-34 AT5G43270 233 / 3e-72 squamosa promoter binding protein-like 2 (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015764 [exp] 293 / 1e-97 AT5G50670 160 / 2e-45 SQUAMOSA PROMOTER-BINDING PROTEIN LIKE 13B, SQUAMOSA PROMOTER-BINDING PROTEIN LIKE 13, Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (.1) Lus10011348 [exp] 238 / 4e-77 AT5G50670 164 / 3e-48 SQUAMOSA PROMOTER-BINDING PROTEIN LIKE 13B, SQUAMOSA PROMOTER-BINDING PROTEIN LIKE 13, Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (.1) Lus10003126 [exp] 236 / 2e-76 AT5G50670 161 / 5e-47 SQUAMOSA PROMOTER-BINDING PROTEIN LIKE 13B, SQUAMOSA PROMOTER-BINDING PROTEIN LIKE 13, Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (.1) Lus10011356 [exp] 130 / 1e-34 AT5G43270 211 / 4e-64 squamosa promoter binding protein-like 2 (.1.2.3) Lus10004523 [exp] 131 / 1e-33 AT3G60030 499 / 5e-163 squamosa promoter-binding protein-like 12 (.1) Lus10021614 [exp] 127 / 1e-33 AT5G43270 192 / 9e-57 squamosa promoter binding protein-like 2 (.1.2.3) Lus10010071 [exp] 128 / 8e-33 AT2G47070 631 / 0.0 squamosa promoter binding protein-like 1 (.1) Lus10028181 [exp] 124 / 1e-32 AT1G02065 224 / 4e-71 squamosa promoter binding protein-like 8 (.1.2) Lus10037041 [exp] 116 / 1e-32 ND 104 / 1e-28 Lus10023818 [exp] 123 / 3e-32 AT2G42200 191 / 3e-57 squamosa promoter binding protein-like 9 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03110 [poplar] [flax] SBP SBP domain
Representative CDS sequence Show only first row Show all	>Potri.003G169400.1 pacid=42786822 polypeptide=Potri.003G169400.1.p locus=Potri.003G169400 ID=Potri.003G169400.1.v4.1 annot-version=v4.1 ATGGAATCAGCTTCTTCTGGATCTTTGAAGAGAGCCAGGACACTTAAAAATGCAACCCGAGTCCCCTCATGCTTGGTTGATGGATGCACTTCAGACCTTA CCAAATGTAGGGATTACCACAGGCGGCATAAAGTATGTGAGCTCCACTCCAAGTCTCGTCAGGTTTTTATTAAAGGTCAGGAACAACGGTTTTGCCAGCA GTGCAGCAGGTTCCATTCGTTGGGTGAGTTTGATGAGGGAAAGCGAAGCTGCAGAAAACGTCTTGACGGACATAATCGGCGGCGAAGAAAGTCCCAGCCA GAATCACTTTCAGTAAATTCTGGAAGGATATTTTCCAACCAAGGTACTAGATATCTACATTTTGGTAGCTCTCAAATATTTTCAACCAGTGTTATGAACG CTGTTTGGACTGGAGCTGCAAAAGCTGAGAGTGATCCAATGCTGAATACTAGTCAATCCTCGATGAACTTCGGTGGCAGAAAAAATCTTTTTCCTGGCTC CTTGTCTTCCAACTATAAAGAAGGAAAGCAGTTCTCTTTCTTACAGGGCACCAGTTCCACAATTCCTGGAGATTCTGTCCATCTAGATGCCAATTCAACG TTAGGAAACAGTGGCAACAGCCAGAAAATGTTCTCTGATGGGCTAAACCGAGTCATAGACTCCAACCGTGCTCTCTCTCTTCTGTCATCTCCACCATCTG AGACTCGGGAGATTGGTTTGAGCGACATGATGCAGCCAGACCTGAACTCTCCTGCTCAGTCCTTGATCCCAAGCTTGAACTATAATGCCCTTGGAATGGA AAGTGAACCAGCAGGATCTGTTTTGGTATCTGATGGCAGCAGCGGCAATGCCAACCTCAATGGTCAGCATATGTTTCAGATCGAACCTGATGGGTCATCT GCAAATGGATCTCACCAGACACTTTCCTTCTCGTGGGAGTAG
AA sequence Show only first row Show all	>Potri.003G169400.1 pacid=42786822 polypeptide=Potri.003G169400.1.p locus=Potri.003G169400 ID=Potri.003G169400.1.v4.1 annot-version=v4.1 MESASSGSLKRARTLKNATRVPSCLVDGCTSDLTKCRDYHRRHKVCELHSKSRQVFIKGQEQRFCQQCSRFHSLGEFDEGKRSCRKRLDGHNRRRRKSQP ESLSVNSGRIFSNQGTRYLHFGSSQIFSTSVMNAVWTGAAKAESDPMLNTSQSSMNFGGRKNLFPGSLSSNYKEGKQFSFLQGTSSTIPGDSVHLDANST LGNSGNSQKMFSDGLNRVIDSNRALSLLSSPPSETREIGLSDMMQPDLNSPAQSLIPSLNYNALGMESEPAGSVLVSDGSSGNANLNGQHMFQIEPDGSS ANGSHQTLSFSWE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G50570	SBP	SPL13, SPL13A	SQUAMOSA PROMOTER-BINDING PROT...		Potri.003G169400 [exp]	0	1
AT5G14060		CARAB-AK-LYS	Aspartate kinase family protei...		Potri.014G145700 [exp]	2.00	0.9196
AT5G15150	HD	ATHB3, HAT7, AT...	HOMEOBOX FROM ARABIDOPSIS THAL...		Potri.017G081700 [exp]	5.56	0.9211
AT1G72060			serine-type endopeptidase inhi...		Potri.019G080600 [exp]	10.39	0.8846
AT2G30070		ATKUP1, ATKT1P,...	POTASSIUM UPTAKE TRANSPORTER 1...		Potri.005G095900 [exp]	10.48	0.8945
AT1G31710			Copper amine oxidase family pr...		Potri.010G089050 [exp]	18.41	0.9179
AT5G45670			GDSL-like Lipase/Acylhydrolase...		Potri.006G166800 [exp]	22.04	0.9112
AT1G64110		DAA1	DUO1-activated ATPase 1, P-loo...		Potri.001G097600 [exp]	24.24	0.8121
AT3G50170			Plant protein of unknown funct...		Potri.016G039601 [exp]	30.82	0.8780
					Potri.007G016532 [exp]	33.46	0.9082
AT2G42840		PDF1	protodermal factor 1 (.1)		Potri.002G060800 [exp]	33.54	0.9116

Compare expression of checked genes

Potri.003G169400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.