Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G24260 359 / 6e-127 MADS AGL9, SEP3 SEPALLATA3, AGAMOUS-like 9, K-box region and MADS-box transcription factor family protein (.1.2.3) AT3G02310 297 / 2e-102 MADS AGL4, SEP2 SEPALLATA 2, AGAMOUS-like 4, K-box region and MADS-box transcription factor family protein (.1) AT5G15800 296 / 5e-102 MADS AGL2, SEP1 SEPALLATA1, AGAMOUS-like 2, K-box region and MADS-box transcription factor family protein (.1.2) AT2G03710 247 / 2e-82 MADS AGL3, SEP4 SEPALLATA 4, AGAMOUS-like 3, K-box region and MADS-box transcription factor family protein (.1.2.3) AT2G45650 205 / 6e-66 MADS AGL6 AGAMOUS-like 6 (.1) AT1G26310 192 / 8e-61 MADS CAL1, AGL10, CAL CAULIFLOWER, AGAMOUS-like 10, K-box region and MADS-box transcription factor family protein (.1) AT1G69120 184 / 1e-57 MADS AGL7, AP1 APETALA1, AGAMOUS-like 7, K-box region and MADS-box transcription factor family protein (.1) AT5G60910 181 / 1e-56 MADS FUL, AGL8 FRUITFULL, AGAMOUS-like 8 (.1.2) AT3G61120 173 / 1e-53 MADS AGL13 AGAMOUS-like 13 (.1) AT3G58780 159 / 6e-48 MADS AGL1, SHP1 SHATTERPROOF 1, AGAMOUS-like 1, K-box region and MADS-box transcription factor family protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G058400 [exp] 460 / 6e-167 AT1G24260 362 / 8e-128 SEPALLATA3, AGAMOUS-like 9, K-box region and MADS-box transcription factor family protein (.1.2.3) Potri.004G115500 [exp] 317 / 4e-110 AT3G02310 357 / 4e-126 SEPALLATA 2, AGAMOUS-like 4, K-box region and MADS-box transcription factor family protein (.1) Potri.017G099700 [exp] 310 / 3e-107 AT3G02310 372 / 8e-132 SEPALLATA 2, AGAMOUS-like 4, K-box region and MADS-box transcription factor family protein (.1) Potri.008G098400 [exp] 262 / 1e-88 AT5G15800 275 / 2e-93 SEPALLATA1, AGAMOUS-like 2, K-box region and MADS-box transcription factor family protein (.1.2) Potri.014G074100 [exp] 222 / 8e-73 AT2G45650 311 / 5e-108 AGAMOUS-like 6 (.1) Potri.012G132600 [exp] 198 / 1e-63 AT2G45650 182 / 3e-57 AGAMOUS-like 6 (.1) Potri.015G134800 [exp] 196 / 3e-62 AT2G45650 209 / 2e-67 AGAMOUS-like 6 (.1) Potri.004G115400 [exp] 180 / 2e-56 AT5G60910 230 / 7e-76 FRUITFULL, AGAMOUS-like 8 (.1.2) Potri.012G062300 [exp] 177 / 4e-55 AT5G60910 288 / 5e-99 FRUITFULL, AGAMOUS-like 8 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003124 [exp] 410 / 1e-146 AT1G24260 355 / 6e-125 SEPALLATA3, AGAMOUS-like 9, K-box region and MADS-box transcription factor family protein (.1.2.3) Lus10015765 [exp] 384 / 2e-136 AT1G24260 347 / 5e-122 SEPALLATA3, AGAMOUS-like 9, K-box region and MADS-box transcription factor family protein (.1.2.3) Lus10037040 [exp] 360 / 6e-127 AT1G24260 350 / 7e-123 SEPALLATA3, AGAMOUS-like 9, K-box region and MADS-box transcription factor family protein (.1.2.3) Lus10003125 [exp] 313 / 2e-109 AT1G24260 290 / 9e-101 SEPALLATA3, AGAMOUS-like 9, K-box region and MADS-box transcription factor family protein (.1.2.3) Lus10005080 [exp] 299 / 5e-103 AT3G02310 372 / 1e-131 SEPALLATA 2, AGAMOUS-like 4, K-box region and MADS-box transcription factor family protein (.1) Lus10034371 [exp] 294 / 1e-100 AT3G02310 364 / 3e-128 SEPALLATA 2, AGAMOUS-like 4, K-box region and MADS-box transcription factor family protein (.1) Lus10011350 [exp] 291 / 1e-100 AT1G24260 234 / 3e-78 SEPALLATA3, AGAMOUS-like 9, K-box region and MADS-box transcription factor family protein (.1.2.3) Lus10034663 [exp] 259 / 3e-87 AT5G15800 267 / 4e-90 SEPALLATA1, AGAMOUS-like 2, K-box region and MADS-box transcription factor family protein (.1.2) Lus10004638 [exp] 227 / 8e-75 AT3G02310 246 / 2e-82 SEPALLATA 2, AGAMOUS-like 4, K-box region and MADS-box transcription factor family protein (.1) Lus10026678 [exp] 216 / 1e-70 AT5G15800 225 / 3e-74 SEPALLATA1, AGAMOUS-like 2, K-box region and MADS-box transcription factor family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00319 [poplar] [flax] SRF-TF SRF-type transcription factor (DNA-binding and dimerisation domain) PF01486 [poplar] [flax] K-box K-box region
Representative CDS sequence Show only first row Show all	>Potri.003G169600.1 pacid=42786023 polypeptide=Potri.003G169600.1.p locus=Potri.003G169600 ID=Potri.003G169600.1.v4.1 annot-version=v4.1 ATGGGGAGAGGTAGGGTTGAGTTGAAGAGAATTGAGAACAAGATCAACAGGCAAGTAACATTTGCAAAGAGAAGGAATGGACTTTTGAAGAAAGCCTATG AGCTTTCCGTTCTTTGTGATGCAGAGATTGCTCTCATCATCTTCTCCAATAGAGGAAAGCTGTACGAGTTTTGCAGTAGTTCAAGCATGCTCAAAACTCT TGAGAGGTACCAGAAGTGCAACTATGGAGCACCAGAGCCAAATGTGTCAGCAAGGGAGGCCTTGGAACTGAGTAGCCAGCAGGAATATCTGAAGCTTAAA GCACGCTACGAAGCTCTGCAAAGAACCCAGAGGAATCTTTTGGGAGAAGACCTTGGCCCTCTGAGCAGCAAAGAGCTTGAATCACTTGAAAGACAGCTTG ATATGTCACTGAAGCAGATCAGATCAACAAGGACCCAGTACATGCTGGATCAGCTCAATGATCTACAGCATAAGGAACACATGTTGACTGCAGCTAATAA GTCTCTGAGAGAAAGGTTGATGGAAGGCTACGAAGTAAATTCACTCCAGTTGAATCTAAGTGCAGAAGATGTGGGTTTTTCTCGACAACAAGCTCAACCC CAAGGTTATGGATTCTTTCATCCTTTGGAGTGCGAACCTACTTTACAAATTGGGTATCAGCCTGACAGTGCTATAACAGTGGTCACTTCTGGCCCAAGTA TGACTGCTTACATGCCAGGTTGGTTACCATGA
AA sequence Show only first row Show all	>Potri.003G169600.1 pacid=42786023 polypeptide=Potri.003G169600.1.p locus=Potri.003G169600 ID=Potri.003G169600.1.v4.1 annot-version=v4.1 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEIALIIFSNRGKLYEFCSSSSMLKTLERYQKCNYGAPEPNVSAREALELSSQQEYLKLK ARYEALQRTQRNLLGEDLGPLSSKELESLERQLDMSLKQIRSTRTQYMLDQLNDLQHKEHMLTAANKSLRERLMEGYEVNSLQLNLSAEDVGFSRQQAQP QGYGFFHPLECEPTLQIGYQPDSAITVVTSGPSMTAYMPGWLP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G24260	MADS	AGL9, SEP3	SEPALLATA3, AGAMOUS-like 9, K-...		Potri.003G169600 [exp]	0	1
AT5G25620		YUC6	YUCCA6, Flavin-binding monooxy...		Potri.007G028200 [exp]	9.11	0.9051	FML8
AT4G11650		ATOSM34	osmotin 34 (.1)		Potri.018G096070 [exp]	14.07	0.9038
AT4G11650		ATOSM34	osmotin 34 (.1)		Potri.018G096063 [exp]	27.71	0.8891
AT1G78950		ATLUP3	Terpenoid cyclases family prot...		Potri.019G079150 [exp]	50.89	0.8328
AT5G05800			unknown protein		Potri.011G125150 [exp]	61.16	0.8414
AT1G32780			GroES-like zinc-binding dehydr...		Potri.011G152800 [exp]	64.04	0.8615
					Potri.014G007300 [exp]	81.64	0.8440
AT5G34883			Protein of unknown function (D...		Potri.017G039175 [exp]	90.06	0.8063
					Potri.003G116550 [exp]	93.89	0.8311
AT5G50690		ATHSD7	hydroxysteroid dehydrogenase 7...		Potri.016G048800 [exp]	101.82	0.7972

Compare expression of checked genes

Potri.003G169600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.