Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G26310 139 / 1e-40 MADS CAL1, AGL10, CAL CAULIFLOWER, AGAMOUS-like 10, K-box region and MADS-box transcription factor family protein (.1) AT5G65070 137 / 1e-40 MADS FCL4, MAF4, AGL69 MADS AFFECTING FLOWERING 4, AGAMOUS-like 69, K-box region and MADS-box transcription factor family protein (.1.2.3) AT1G69120 135 / 2e-39 MADS AGL7, AP1 APETALA1, AGAMOUS-like 7, K-box region and MADS-box transcription factor family protein (.1) AT5G65050 132 / 3e-39 MADS MAF2, AGL31 MADS AFFECTING FLOWERING 2, AGAMOUS-like 31 (.1.2.3) AT5G10140 132 / 7e-39 MADS FLF, AGL25, FLC FLOWERING LOCUS F, FLOWERING LOCUS C, AGAMOUS-like 25, K-box region and MADS-box transcription factor family protein (.1.2.3.4) AT5G60910 133 / 9e-39 MADS FUL, AGL8 FRUITFULL, AGAMOUS-like 8 (.1.2) AT2G03710 129 / 1e-37 MADS AGL3, SEP4 SEPALLATA 4, AGAMOUS-like 3, K-box region and MADS-box transcription factor family protein (.1.2.3) AT1G77080 129 / 2e-37 MADS FLM, AGL27, MAF1 MADS AFFECTING FLOWERING 1, FLOWERING LOCUS M, AGAMOUS-like 27, K-box region and MADS-box transcription factor family protein (.2.3.4.5) AT1G24260 130 / 3e-37 MADS AGL9, SEP3 SEPALLATA3, AGAMOUS-like 9, K-box region and MADS-box transcription factor family protein (.1.2.3) AT5G65060 128 / 3e-37 MADS FCL3, MAF3, AGL70 MADS AFFECTING FLOWERING 3, AGAMOUS-like 70, K-box region and MADS-box transcription factor family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G170000 [exp] 402 / 3e-145 AT5G65070 136 / 2e-40 MADS AFFECTING FLOWERING 4, AGAMOUS-like 69, K-box region and MADS-box transcription factor family protein (.1.2.3) Potri.001G058200 [exp] 206 / 1e-67 AT2G03710 156 / 3e-48 SEPALLATA 4, AGAMOUS-like 3, K-box region and MADS-box transcription factor family protein (.1.2.3) Potri.003G169850 [exp] 200 / 4e-65 AT2G45650 143 / 5e-42 AGAMOUS-like 6 (.1) Potri.003G170200 [exp] 195 / 1e-63 AT5G65050 134 / 8e-40 MADS AFFECTING FLOWERING 2, AGAMOUS-like 31 (.1.2.3) Potri.012G062300 [exp] 139 / 8e-41 AT5G60910 288 / 5e-99 FRUITFULL, AGAMOUS-like 8 (.1.2) Potri.004G115400 [exp] 137 / 3e-40 AT5G60910 230 / 7e-76 FRUITFULL, AGAMOUS-like 8 (.1.2) Potri.008G098500 [exp] 135 / 9e-40 AT1G69120 336 / 9e-118 APETALA1, AGAMOUS-like 7, K-box region and MADS-box transcription factor family protein (.1) Potri.010G154100 [exp] 134 / 6e-39 AT1G69120 324 / 7e-113 APETALA1, AGAMOUS-like 7, K-box region and MADS-box transcription factor family protein (.1) Potri.001G328600 [exp] 132 / 8e-39 AT5G60910 136 / 1e-39 FRUITFULL, AGAMOUS-like 8 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017871 [exp] 135 / 4e-40 AT1G69120 264 / 2e-90 APETALA1, AGAMOUS-like 7, K-box region and MADS-box transcription factor family protein (.1) Lus10007983 [exp] 137 / 5e-40 AT5G60910 298 / 3e-102 FRUITFULL, AGAMOUS-like 8 (.1.2) Lus10021140 [exp] 137 / 6e-40 AT5G60910 291 / 1e-99 FRUITFULL, AGAMOUS-like 8 (.1.2) Lus10004637 [exp] 130 / 9e-38 AT1G69120 318 / 2e-111 APETALA1, AGAMOUS-like 7, K-box region and MADS-box transcription factor family protein (.1) Lus10034662 [exp] 130 / 1e-37 AT5G60910 284 / 3e-97 FRUITFULL, AGAMOUS-like 8 (.1.2) Lus10026679 [exp] 130 / 1e-37 AT1G69120 338 / 1e-118 APETALA1, AGAMOUS-like 7, K-box region and MADS-box transcription factor family protein (.1) Lus10034663 [exp] 128 / 3e-36 AT5G15800 267 / 4e-90 SEPALLATA1, AGAMOUS-like 2, K-box region and MADS-box transcription factor family protein (.1.2) Lus10005080 [exp] 125 / 3e-35 AT3G02310 372 / 1e-131 SEPALLATA 2, AGAMOUS-like 4, K-box region and MADS-box transcription factor family protein (.1) Lus10015017 [exp] 122 / 4e-35 AT2G45650 174 / 1e-54 AGAMOUS-like 6 (.1) Lus10034370 [exp] 122 / 2e-34 AT1G69120 224 / 1e-73 APETALA1, AGAMOUS-like 7, K-box region and MADS-box transcription factor family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00319 [poplar] [flax] SRF-TF SRF-type transcription factor (DNA-binding and dimerisation domain) PF01486 [poplar] [flax] K-box K-box region
Representative CDS sequence Show only first row Show all	>Potri.003G169700.2 pacid=42784612 polypeptide=Potri.003G169700.2.p locus=Potri.003G169700 ID=Potri.003G169700.2.v4.1 annot-version=v4.1 ATGGGGAGAAAGAAAGTGGAGCTAAAGCGAATCGAAAAGAAGATCTGTCGACAAATCACTTTCTCGAAGAGGCGAAATGGACTGATCAAGAAAGCACGCG ACCTCTCTCTTCTCTGTGACGTCCAAGTCGCTCTCCTCGTCTTCTCCAGCAGTGGCAAGCTGTATGAATTCTCTAGCGCCGGCAGTTTGGCCAAAATCCT GAAACGTCATGGGAGTTATTTCGAAGAGAAAACTGCATTGTCTAATGGTGCTAATGATGCGGAGCTATATCATGGTAAATATGAAAAAAAAATCAAGTCG TTTGCAGAGCTGTTGCAAACAGTACAAAGTATCCACAGGCAAGTTGGGAATTCAAACTTCGAGGAGCTGACCTTAAGCGACCTAGAACAAACGGAGATGC AACTTGATGCTGCACTGAGACGTACGAGAGCTAGAAAGACGGAACTGATGTTGGAAACAATTAATGCCCTCAATGACAAGGAAAAGACACTAAGGGAGGA AAATCAACGTCTACAGACGCAGGTTGTAGCCATGAACAATGACAATGAGACTAATGGCATGATGTCTGGATCTTTTGAACCACTATTTGGTTTGCTTAAA CAGTAG
AA sequence Show only first row Show all	>Potri.003G169700.2 pacid=42784612 polypeptide=Potri.003G169700.2.p locus=Potri.003G169700 ID=Potri.003G169700.2.v4.1 annot-version=v4.1 MGRKKVELKRIEKKICRQITFSKRRNGLIKKARDLSLLCDVQVALLVFSSSGKLYEFSSAGSLAKILKRHGSYFEEKTALSNGANDAELYHGKYEKKIKS FAELLQTVQSIHRQVGNSNFEELTLSDLEQTEMQLDAALRRTRARKTELMLETINALNDKEKTLREENQRLQTQVVAMNNDNETNGMMSGSFEPLFGLLK Q

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G65070	MADS	FCL4, MAF4, AGL...	MADS AFFECTING FLOWERING 4, AG...		Potri.003G169700 [exp]	0	1
AT2G45650	MADS	AGL6	AGAMOUS-like 6 (.1)		Potri.003G169850 [exp]	1.73	0.8524
AT5G65070	MADS	FCL4, MAF4, AGL...	MADS AFFECTING FLOWERING 4, AG...		Potri.003G170000 [exp]	2.00	0.7920
AT5G65050	MADS	MAF2, AGL31	MADS AFFECTING FLOWERING 2, AG...		Potri.003G170200 [exp]	3.00	0.8189
ATCG01000		ATCG01000.1, YC...	Ycf1 protein (.1)		Potri.002G008176 [exp]	34.49	0.7563
ATCG00120		ATCG00120.1, AT...	ATP synthase subunit alpha (.1...		Potri.013G138000 [exp]	36.24	0.7568
ATCG00710		ATCG00710.1, PS...	photosystem II reaction center...		Potri.011G113742 [exp]	39.42	0.7645
AT4G34430		ATSWI3D, CHB3	SWITCH/SUCROSE NONFERMENTING 3...		Potri.004G153300 [exp]	56.14	0.6252	(),of,part,SWI3.3,CHB902
AT5G45110		ATNPR3, NPR3	NPR1-like protein 3 (.1)		Potri.005G206100 [exp]	63.08	0.7467
ATCG01000		ATCG01000.1, YC...	Ycf1 protein (.1)		Potri.011G073900 [exp]	64.65	0.7402
ATCG00130		ATCG00130.1, AT...	ATPase, F0 complex, subunit B/...		Potri.013G137900 [exp]	68.46	0.7524

Compare expression of checked genes

Potri.003G169700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.