Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G53150 312 / 3e-95 DNAJ heat shock N-terminal domain-containing protein (.1) AT2G25560 294 / 4e-89 DNAJ heat shock N-terminal domain-containing protein (.1) AT5G35753 271 / 4e-81 Domain of unknown function (DUF3444) (.1) AT2G05230 258 / 2e-75 DNAJ heat shock N-terminal domain-containing protein (.1) AT2G05250 258 / 2e-75 DNAJ heat shock N-terminal domain-containing protein (.1) AT5G37380 219 / 1e-63 Chaperone DnaJ-domain superfamily protein (.1.2.3.4.5) AT5G50115 213 / 1e-60 unknown protein AT4G19570 200 / 1e-55 Chaperone DnaJ-domain superfamily protein (.1) AT5G37750 179 / 3e-51 Chaperone DnaJ-domain superfamily protein (.1) AT5G37440 177 / 3e-50 Chaperone DnaJ-domain superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G057200 [exp] 1160 / 0 AT5G53150 318 / 1e-97 DNAJ heat shock N-terminal domain-containing protein (.1) Potri.012G001100 [exp] 664 / 0 AT5G53150 570 / 0.0 DNAJ heat shock N-terminal domain-containing protein (.1) Potri.015G097500 [exp] 641 / 0 AT5G53150 487 / 4e-162 DNAJ heat shock N-terminal domain-containing protein (.1) Potri.015G020200 [exp] 632 / 0 AT5G53150 574 / 0.0 DNAJ heat shock N-terminal domain-containing protein (.1) Potri.012G098800 [exp] 409 / 1e-131 AT5G53150 282 / 5e-84 DNAJ heat shock N-terminal domain-containing protein (.1) Potri.002G221000 [exp] 320 / 2e-98 AT2G05230 696 / 0.0 DNAJ heat shock N-terminal domain-containing protein (.1) Potri.014G165600 [exp] 308 / 5e-94 AT2G05230 730 / 0.0 DNAJ heat shock N-terminal domain-containing protein (.1) Potri.003G097800 [exp] 183 / 4e-49 AT2G35540 235 / 4e-69 DNAJ heat shock N-terminal domain-containing protein (.1) Potri.010G018800 [exp] 181 / 3e-47 AT5G18750 446 / 3e-142 DNAJ heat shock N-terminal domain-containing protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028842 [exp] 709 / 0 AT5G53150 498 / 3e-167 DNAJ heat shock N-terminal domain-containing protein (.1) Lus10008983 [exp] 700 / 0 AT5G53150 509 / 3e-172 DNAJ heat shock N-terminal domain-containing protein (.1) Lus10038816 [exp] 346 / 7e-109 AT5G53150 540 / 0.0 DNAJ heat shock N-terminal domain-containing protein (.1) Lus10014927 [exp] 331 / 4e-103 AT5G53150 535 / 0.0 DNAJ heat shock N-terminal domain-containing protein (.1) Lus10012334 [exp] 288 / 8e-86 AT5G35753 414 / 3e-134 Domain of unknown function (DUF3444) (.1) Lus10006380 [exp] 286 / 4e-85 AT5G35753 420 / 2e-136 Domain of unknown function (DUF3444) (.1) Lus10001171 [exp] 211 / 5e-61 AT2G05250 308 / 2e-98 DNAJ heat shock N-terminal domain-containing protein (.1) Lus10001744 [exp] 211 / 2e-60 AT2G05250 322 / 5e-103 DNAJ heat shock N-terminal domain-containing protein (.1) Lus10027316 [exp] 181 / 6e-49 AT2G35540 383 / 1e-126 DNAJ heat shock N-terminal domain-containing protein (.1) Lus10039019 [exp] 181 / 6e-49 AT2G35540 380 / 7e-126 DNAJ heat shock N-terminal domain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0392 [poplar] [flax] Chaperone-J PF00226 [poplar] [flax] DnaJ DnaJ domain CL0392 [poplar] [flax] PF11926 [poplar] [flax] DUF3444 Domain of unknown function (DUF3444)
Representative CDS sequence Show only first row Show all	>Potri.003G171200.1 pacid=42785857 polypeptide=Potri.003G171200.1.p locus=Potri.003G171200 ID=Potri.003G171200.1.v4.1 annot-version=v4.1 ATGGAATGCAACAAAGATGAGGCCACCAGGGCCAAAGAGATTGCTGAGAAGAAGTTCTCGGCGAAAGACATTGCGGGGGCAAAGAAATTTGCTCTGAAGG CCCAGAACTTGTATCCTGGACTTGAAGGGATTCCTCAGATGATGGCTACACTTGATGTGTATGTTGCTGCTGGGAACAAAATAAATGGGGAAGCAGATTG GTATGGGATACTTGGTGCAGATCCACAAGCAGATGATGAGGCGGTGCGGAAACATTATAGGAAGCTGGCTCTTATGCTTCATCCTGATAAAAACAAGTCT GTTGGAGCGGATGGTGCATTTAAGTTTATTTCCGAGGCATGGAGTTTATTGTCTGATAAAACCAAGAGGATGGCATATGACCAGAGAAGAAATGGGAAAG TATTTCAAAAGAGTTCATCTTCTTTTGGGAGTTCATCAGCAAAACCAGGGTCCAATGGGTTTTTCAATTTCACCAAATCGAGTGTGAAGACGAACAAAAG TACTTCTCGAACTGGCCATTCTTCAACTCCTGCTTCATCTTACAAGACGAAACCCAATACCTTTTGGACTGTCTGTCATGGATGCAAGATGCAATACGAG TATCTCAGAGTCTATCTTAATCATAAGCTACTATGTCCTAATTGCCATGAGCCATTTTTAGCCGTTGAAATGCCACCCCCTCCTTTGCATGCTTCTAGGT CTGCTGCACCATCGAGTTCTTTTAAGCAGCAGCAGAACTCAAACCATCAAGCTGCTACTAGCAGAAACACATCTCATTCTGGAAGGAGTAATGTTGCCTC TTCAAATTTGGGAGCAGGGGGATCCAGTGGTCCTGATTCAAATAACCAGGGAAACTTTCAGTGGGGCGCTTTCTCTAGAGCTGGTGGTGCTACAACTGCC GCTCAAGCTGTAAGTGTGGTCCAGCGGGCATATGAAAAAGTGAAGAGAGAGCGCGAGGAAGTACAGGCAGCTACAAAAAGAGAGGAGGCCATGAAGAGAA AGAATCGTGCTGCTTCAAAAAAGATGTCTAGTGCATCTTCTAATGTACATTCTAATGCTGCTAAGAGAAGAAGAGGCATGGAAGATGTTGGCCATGGAAA CAACGGAAGTCCATTTACCACGGGATTTGGAGGAGCTGGCAGTGGCACAGCTAATATATCTGGATTTAGGCAGGGAAGTTCTGAAAATAGGGTGAATGGA ATCACTAAGCCCTACGGCATGAGGGATGTCTCCAAGTTTGAAACTCAAACCGTACTAATGGAGAAGGCAAAGACAGACATTCGCAAGAATATAAATGAAT GGAAGTCCGCTACAGTAGTTAAATCTGCCCCCGGAAAGGGGGTGGAGAATGAGAAAGCAATTGATCAGGGGAAAAATTCTTTGTCAAACCCTGATGACAT AACTGACCAGAACAAGTCTGTGGATATGGAAAATGGAGTCAATGACATCAAAATTTCTCCCATCACTTCTGGCATGAAGACAGAAGCTGAAACTTTGGAA ACGATGTCAATAAATGTCCCAGATTCTGATTTTCACGATTTTGACAAAGATCGAACTGAAAGATGTTTTGGGGAAAACCAGGTATGGGCTGCATATGATG ATGATGATGGGATGCCCCGATATTATGCTATGATCCAAAGTGTAATTTCTTTGAATCCGTTCAAAATGCGGATCAGTTGGCTTAATTCTAAAACTAATAG TGAACTGGGCCTACTAAATTGGGTTGGTTCTGGCTTCTCAAAAACTTGTGGCGATTTCAGAGTGGGCAGATATGAGATATATAACTCACTCAATTCCTTT TCACACAAGGTAAGGTGGATAAAAGGAACAGGTGGGGTGATTCGTGTATATCCGAGGAAAGGGGATGTTTGGGCTCTCTATAGGAATTGGTCCCCTGAAT GGAACGAGCTGACAGCAGATGAGGTGATACACAAGTATGACATGGTGGAAGTACTTGAAGACTATAGTGAAGAACTAGGTGTAACTGTTACTCCCTTGGT AAAAGTTGCTGGTTTCAAGACTGTGTTTCACCAGCATTTGGACCCCAAGGAAGTCAGGAGGATCCCAAGGGAAGAGATGTTTCGATTTTCACACCATGTT CCCTCATACTTGCTTATGGGTCAAGAAGGTCCCAATGCTCCGAAAGGTTGCAGAGAGCTGGACCCAGCAGCTACTCCATCAGAACTTCTTCAGGTTGTGG TAGATGTCAAGGAAGAAGAGATTGTGGAGAATGGGGGAAATAAAACGGAGAGCAAAGAAAGTAATGAAGGAAAGAGCCAGTCACCTGTAACTTCATGA
AA sequence Show only first row Show all	>Potri.003G171200.1 pacid=42785857 polypeptide=Potri.003G171200.1.p locus=Potri.003G171200 ID=Potri.003G171200.1.v4.1 annot-version=v4.1 MECNKDEATRAKEIAEKKFSAKDIAGAKKFALKAQNLYPGLEGIPQMMATLDVYVAAGNKINGEADWYGILGADPQADDEAVRKHYRKLALMLHPDKNKS VGADGAFKFISEAWSLLSDKTKRMAYDQRRNGKVFQKSSSSFGSSSAKPGSNGFFNFTKSSVKTNKSTSRTGHSSTPASSYKTKPNTFWTVCHGCKMQYE YLRVYLNHKLLCPNCHEPFLAVEMPPPPLHASRSAAPSSSFKQQQNSNHQAATSRNTSHSGRSNVASSNLGAGGSSGPDSNNQGNFQWGAFSRAGGATTA AQAVSVVQRAYEKVKREREEVQAATKREEAMKRKNRAASKKMSSASSNVHSNAAKRRRGMEDVGHGNNGSPFTTGFGGAGSGTANISGFRQGSSENRVNG ITKPYGMRDVSKFETQTVLMEKAKTDIRKNINEWKSATVVKSAPGKGVENEKAIDQGKNSLSNPDDITDQNKSVDMENGVNDIKISPITSGMKTEAETLE TMSINVPDSDFHDFDKDRTERCFGENQVWAAYDDDDGMPRYYAMIQSVISLNPFKMRISWLNSKTNSELGLLNWVGSGFSKTCGDFRVGRYEIYNSLNSF SHKVRWIKGTGGVIRVYPRKGDVWALYRNWSPEWNELTADEVIHKYDMVEVLEDYSEELGVTVTPLVKVAGFKTVFHQHLDPKEVRRIPREEMFRFSHHV PSYLLMGQEGPNAPKGCRELDPAATPSELLQVVVDVKEEEIVENGGNKTESKESNEGKSQSPVTS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G53150			DNAJ heat shock N-terminal dom...		Potri.003G171200 [exp]	0	1
AT5G16680			RING/FYVE/PHD zinc finger supe...		Potri.019G041900 [exp]	1.00	0.9243
AT5G66820			unknown protein		Potri.007G041300 [exp]	3.46	0.8615
AT1G13940			Plant protein of unknown funct...		Potri.010G162000 [exp]	3.74	0.8601
AT3G22430			unknown protein		Potri.008G152900 [exp]	3.74	0.9037
AT4G29940	HD	PRHA	pathogenesis related homeodoma...		Potri.006G075500 [exp]	4.58	0.8648
AT5G37830		OXP1	oxoprolinase 1 (.1)		Potri.004G091000 [exp]	9.38	0.8173
AT4G03030			Galactose oxidase/kelch repeat...		Potri.005G221300 [exp]	10.39	0.8629
AT2G24960			unknown protein		Potri.006G265900 [exp]	14.28	0.8432
AT4G09980		EMB1691	EMBRYO DEFECTIVE 1691, Methylt...		Potri.015G147200 [exp]	15.49	0.8624
AT4G15820			unknown protein		Potri.008G222000 [exp]	16.49	0.8578

Compare expression of checked genes

Potri.003G171200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.