Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G27340 628 / 0 Galactose oxidase/kelch repeat superfamily protein (.1) AT1G30950 129 / 1e-32 UFO UNUSUAL FLORAL ORGANS, F-box family protein (.1) AT5G15710 120 / 2e-29 Galactose oxidase/kelch repeat superfamily protein (.1) AT4G33160 111 / 2e-26 F-box family protein (.1) AT5G43190 86 / 6e-18 Galactose oxidase/kelch repeat superfamily protein (.1) AT3G61590 83 / 5e-17 HWS, HS HAWAIIAN SKIRT, Galactose oxidase/kelch repeat superfamily protein (.1.2) AT1G12870 69 / 2e-12 F-box and associated interaction domains-containing protein (.1) AT5G49610 67 / 5e-12 F-box family protein (.1) AT1G15680 65 / 4e-11 F-box family protein (.1) AT4G10190 62 / 2e-10 F-box and associated interaction domains-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G057100 [exp] 837 / 0 AT1G27340 613 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.006G217500 [exp] 139 / 9e-37 AT4G33160 419 / 9e-145 F-box family protein (.1) Potri.004G112400 [exp] 129 / 1e-32 AT5G15710 753 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.017G102300 [exp] 121 / 4e-30 AT5G15710 744 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.003G074100 [exp] 120 / 8e-30 AT1G30950 528 / 0.0 UNUSUAL FLORAL ORGANS, F-box family protein (.1) Potri.001G160900 [exp] 116 / 2e-28 AT1G30950 554 / 0.0 UNUSUAL FLORAL ORGANS, F-box family protein (.1) Potri.002G118700 [exp] 111 / 6e-27 AT5G43190 352 / 7e-120 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.014G016200 [exp] 103 / 3e-24 AT5G43190 277 / 2e-90 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.014G093200 [exp] 99 / 2e-22 AT3G61590 538 / 0.0 HAWAIIAN SKIRT, Galactose oxidase/kelch repeat superfamily protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037030 [exp] 723 / 0 AT1G27340 615 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10015775 [exp] 708 / 0 AT1G27340 598 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10011354 [exp] 202 / 6e-62 AT1G27340 187 / 2e-56 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10003117 [exp] 165 / 3e-49 AT1G27340 165 / 7e-50 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10003118 [exp] 125 / 3e-34 AT1G27340 115 / 2e-31 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10031955 [exp] 124 / 8e-31 AT5G15710 719 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10007755 [exp] 123 / 1e-30 AT1G30950 514 / 0.0 UNUSUAL FLORAL ORGANS, F-box family protein (.1) Lus10018690 [exp] 123 / 1e-30 AT1G30950 514 / 0.0 UNUSUAL FLORAL ORGANS, F-box family protein (.1) Lus10035147 [exp] 122 / 5e-30 AT5G15710 721 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10010610 [exp] 93 / 1e-20 AT5G43190 327 / 2e-110 Galactose oxidase/kelch repeat superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0271 [poplar] [flax] F-box PF00646 [poplar] [flax] F-box F-box domain
Representative CDS sequence Show only first row Show all	>Potri.003G171300.1 pacid=42786063 polypeptide=Potri.003G171300.1.p locus=Potri.003G171300 ID=Potri.003G171300.1.v4.1 annot-version=v4.1 ATGGAAGAAGAGCTGGCCATGCTTAGGCAATTCATTGGTCAGCTTGTAGACCTTTTCAATCTCTACGGCTCTCCTCTCCCTCCTTTTGATTCTCTTCAAT TCCTTCACTTTCACAACCAACAACAAAACAACAACAACAACAACAACAGATGGTGCGTCCTCAATCTTGATGATGGCTCTGCAGATGATTACTGTAGCCT TGTGATGGCGGCTGGAAAATCTAGAAGGTTCAAGATGTTGGAACCTGGCAAGCCTCCAGCCTCCAAGAAACCTCGAAAGGAGCGGAATCGAGGAAAATCA CTTGGAACTACCAGTTCAAATGAGGTTATGCAACAAGAGATTTGGAAAGAATTCCCAGAAGACTTGTTTGAAGCCGTTATTGCTAGACTTCCAATTGCTA CATTTTTCCGCTTCCGCTCGGTTTGTCAAAAATGGAACTCCTTGCTTGACTCTCAAAGTTTCTCTCAGCATTGTGCCCAAGTTCCACAAGCCAACCCCTG GTTTTACACCATCACTCATGAAAATGTGAATTCTGGAGCCATTTATGACCCTTCTTTGAAGAAATGGCATCACCCAACTATAAGTTACCTGCCAACAAAG ATGATTGTCTTACCAGTTGCTTCTGCAGGGGGTCTTGTGTGCTTTCTTGACATTGGTCACAGGAACTTCTATGTCTGCAACCCTCTGACTCAATCTTTTA AAGAGCTGCCACCAAGGTCAGTGAATGTCTGGTCCCGTGTTGCTGTGGGGATGACTTTGAATGGCAGTGCAGCCAGTGGGGGCTACAAGATCTTGTGGGT GTGCTGTGATGGAGAGTATGAAGTTTACGACTCACTGAAAAATTCTTGGACCCGACCAGGAAGCATGCCCTCTTTTATAAAGCTACCCCTATCACTGAAC TTCCGGTCACAAGCAGTTTCCCTTGGAGGCACGCTTTATTTCATGCGGTCAGATCCTGAAGGGATCGTGTCCTACGATATGGTTACTGGGGTTTGGAAGC AATTTGTTATGCCAGCCCCACTCCATCTGAGTGATCCCACACTTGCAGAGTGTGGGGGGCGGATCATGCTCGTTGGCTTGCTAACAAAGAATGCAGCCAC ATGCGTGTGCATATGGGAGCTGCAGAAGATGACACTCTTGTGGAAGGAGGTTGACAGAATGCCAAACATATGGTGCTTAGATTTCTATGGAAAGCACGTT AGGATGACTTGCTTGGGCAACACAGGTTTGCTCATGCTGTCACTAAGATCAAGACAAATGAACCGACTAGTTAGTTACAATGTGGTGAGCAGGGAATGGC TCAAGGTTCCTGGTTGTTTGGTGCCACGTGGGAAAAAGCGGCAGTGGATTGCATGTGGCACTGCCTTCAATCCATGCTTGACTGCTACAACTTAG
AA sequence Show only first row Show all	>Potri.003G171300.1 pacid=42786063 polypeptide=Potri.003G171300.1.p locus=Potri.003G171300 ID=Potri.003G171300.1.v4.1 annot-version=v4.1 MEEELAMLRQFIGQLVDLFNLYGSPLPPFDSLQFLHFHNQQQNNNNNNNRWCVLNLDDGSADDYCSLVMAAGKSRRFKMLEPGKPPASKKPRKERNRGKS LGTTSSNEVMQQEIWKEFPEDLFEAVIARLPIATFFRFRSVCQKWNSLLDSQSFSQHCAQVPQANPWFYTITHENVNSGAIYDPSLKKWHHPTISYLPTK MIVLPVASAGGLVCFLDIGHRNFYVCNPLTQSFKELPPRSVNVWSRVAVGMTLNGSAASGGYKILWVCCDGEYEVYDSLKNSWTRPGSMPSFIKLPLSLN FRSQAVSLGGTLYFMRSDPEGIVSYDMVTGVWKQFVMPAPLHLSDPTLAECGGRIMLVGLLTKNAATCVCIWELQKMTLLWKEVDRMPNIWCLDFYGKHV RMTCLGNTGLLMLSLRSRQMNRLVSYNVVSREWLKVPGCLVPRGKKRQWIACGTAFNPCLTATT

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G27340			Galactose oxidase/kelch repeat...		Potri.003G171300 [exp]	0	1
AT5G12840	CCAAT	NF-YA1, ATHAP2A...	"nuclear factor Y, subunit A1"...		Potri.001G257600 [exp]	1.73	0.8811
AT4G18160		KCO6, ATTPK3, A...	Ca2+ activated outward rectify...		Potri.005G203000 [exp]	3.46	0.8894
AT1G78290		SRK2C, SNRK2-8,...	SNF1-RELATED PROTEIN KINASE 2C...		Potri.005G162500 [exp]	8.60	0.8864
AT3G23560		ALF5	ABERRANT LATERAL ROOT FORMATIO...		Potri.011G117300 [exp]	15.81	0.8563	Pt-HLS3.1
AT4G13830		J20	DNAJ-like 20 (.1.2)		Potri.017G058400 [exp]	20.24	0.7947	Pt-DNAJ.1
AT1G22380		ATUGT85A3	UDP-glucosyl transferase 85A3 ...		Potri.016G105300 [exp]	24.81	0.8499
AT2G45130		ATSPX3	ARABIDOPSIS THALIANA SPX DOMAI...		Potri.014G061400 [exp]	33.09	0.8161
AT1G55280			Lipase/lipooxygenase, PLAT/LH2...		Potri.003G218100 [exp]	33.31	0.8758
AT1G65770		AMR1	ascorbic acid mannose pathway ...		Potri.005G105400 [exp]	38.00	0.8434
AT2G45630			D-isomer specific 2-hydroxyaci...		Potri.002G151200 [exp]	44.11	0.8625

Compare expression of checked genes

Potri.003G171300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.