Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G67340 484 / 1e-171 HCP-like superfamily protein with MYND-type zinc finger (.1) AT5G50450 389 / 1e-134 HCP-like superfamily protein with MYND-type zinc finger (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G056800 [exp] 690 / 0 AT1G67340 499 / 2e-177 HCP-like superfamily protein with MYND-type zinc finger (.1) Potri.015G096200 [exp] 448 / 1e-157 AT1G67340 438 / 3e-154 HCP-like superfamily protein with MYND-type zinc finger (.1) Potri.012G097600 [exp] 447 / 2e-157 AT1G67340 436 / 2e-153 HCP-like superfamily protein with MYND-type zinc finger (.1) Potri.013G008800 [exp] 60 / 5e-10 AT1G74875 110 / 2e-29 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006418 [exp] 531 / 0 AT1G67340 492 / 1e-174 HCP-like superfamily protein with MYND-type zinc finger (.1) Lus10015784 [exp] 512 / 0 AT1G67340 474 / 5e-168 HCP-like superfamily protein with MYND-type zinc finger (.1) Lus10037021 [exp] 362 / 6e-124 AT1G67340 291 / 8e-97 HCP-like superfamily protein with MYND-type zinc finger (.1) Lus10011362 [exp] 304 / 1e-101 AT1G67340 352 / 5e-121 HCP-like superfamily protein with MYND-type zinc finger (.1) Lus10038709 [exp] 45 / 4e-05 AT1G67623 90 / 3e-21 F-box family protein (.1) Lus10037978 [exp] 44 / 0.0001 AT1G67623 82 / 3e-18 F-box family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0175 [poplar] [flax] TRASH PF01753 [poplar] [flax] zf-MYND MYND finger CL0020 [poplar] [flax] TPR PF08238 [poplar] [flax] Sel1 Sel1 repeat
Representative CDS sequence Show only first row Show all	>Potri.003G171400.1 pacid=42785184 polypeptide=Potri.003G171400.1.p locus=Potri.003G171400 ID=Potri.003G171400.1.v4.1 annot-version=v4.1 ATGAGAACACGGAGAGGGCTTTCTTATCCTAGAGGAGCAGCAGTAAACGCTTGTGATACAGCAGCAGGGAAGAGGACGGCAACAACAAGTTATAAGAGAG AAAGACCTGATTTCGCCGCCGGAGATTACCTGGTTTGCCGGAAAAAGAATCGATTAATCTCAACTCAAAAAACCGGAGAGACCGACTTGTTTGATTCTTT ACCCGATGATCTTGTCATTTCTATCCTCTGCAAACTTAGCTCTTCTGCTTCTTGCCCCTCCGATTTCATCAACGTTTTACTTACGTGCAAGAGACTAAAT GGGTTGGGCCTTCATTCTCTAGTACTATCCAAAGCTTCGCCGAAAACATTTGCAGTCAAAGCCAAAAATTGGTCTGATTCTGCTCACCGTTTCCTCAAAC TCTTCGCCGACGCTGGAAATGTTGAAGCTTGTTACACTCTTGGCATGATTCGGTTTTACTGTTTACAAAACCGAGGGAGTGGAGCTTCTCTGATGGCCAA GGCAGCGATTAGCTCATACGCGCCTGCACTTTATTCCCTTGCTGTTATACAATTCAATGGAAGCGGTGGCTCTAAAAGCGACAAAGACCTTCGTGCCGGC GTTGCGCTGTGTGCACGCGCTGCCTTTCTTGGCCACATCGACGCCCTACGCGAGCTAGGACACTGCCTGCAAGACGGTTATGGTGTCCGGCAAAACGTAA CAGAAGGACGGCGTTTCCTCGTCCAAGCAAACGCGCGTGAACTTGCGGCTGTTTTATCGAAACATAATTCTGGGTTCCCAACACGCACTTGGTTCTCGTG GAACCCACACGCGCATCCTAACCATCGACACCCTACTGGGAATGGACCTAGCGGGTGCCCTTTATTGAGTGACTTTGGGTGTAATGTTCCAGCTCCTGAG AGTCATCCGGCCAGTCGTTTTATGACGGAATGGTTTGCTATTCGGGGCGGGTCTTCGGGTTCTGGTCTCCGCTTGTGCTCTCATACTGGTTGTGGGCGTT CCGAGACGAGAAAGCATGAGTTTAGACGGTGTTCTGTTTGTGGAGCTGTTAATTATTGTTCACGCGCCTGTCAAGCACTTGACTGGAAGCTCAGGCATAA AGAGGGGTGCGCCCCTGTTGAGCGGTGGGTCGATGAGGATGGTGAGGGTGGTGCAGACGGGGATGACGGTGGCGTGGATGGTGACGACGACGATGTCATG ATTGAGAGCTAA
AA sequence Show only first row Show all	>Potri.003G171400.1 pacid=42785184 polypeptide=Potri.003G171400.1.p locus=Potri.003G171400 ID=Potri.003G171400.1.v4.1 annot-version=v4.1 MRTRRGLSYPRGAAVNACDTAAGKRTATTSYKRERPDFAAGDYLVCRKKNRLISTQKTGETDLFDSLPDDLVISILCKLSSSASCPSDFINVLLTCKRLN GLGLHSLVLSKASPKTFAVKAKNWSDSAHRFLKLFADAGNVEACYTLGMIRFYCLQNRGSGASLMAKAAISSYAPALYSLAVIQFNGSGGSKSDKDLRAG VALCARAAFLGHIDALRELGHCLQDGYGVRQNVTEGRRFLVQANARELAAVLSKHNSGFPTRTWFSWNPHAHPNHRHPTGNGPSGCPLLSDFGCNVPAPE SHPASRFMTEWFAIRGGSSGSGLRLCSHTGCGRSETRKHEFRRCSVCGAVNYCSRACQALDWKLRHKEGCAPVERWVDEDGEGGADGDDGGVDGDDDDVM IES

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G67340			HCP-like superfamily protein w...		Potri.003G171400 [exp]	0	1
AT1G17840		AtABCG11, WBC11...	DESPERADO, CUTICULAR DEFECT AN...		Potri.017G051300 [exp]	4.24	0.7387
AT1G74960		ATKAS2, KAS2, F...	ARABIDOPSIS BETA-KETOACYL-ACP ...		Potri.006G138000 [exp]	18.97	0.6623	Pt-KAS2.2
AT2G26490			Transducin/WD40 repeat-like su...		Potri.002G130400 [exp]	25.49	0.6803
AT4G21390		B120	S-locus lectin protein kinase ...		Potri.001G441801 [exp]	34.42	0.6561
AT5G23960		ATTPS21	terpene synthase 21 (.1.2)		Potri.019G016500 [exp]	36.41	0.6396
					Potri.008G224328 [exp]	39.03	0.6792
AT1G71910			unknown protein		Potri.013G114000 [exp]	39.11	0.6678
AT2G41430		LSR1, CID1, ERD...	CTC-Interacting Domain 1, dehy...		Potri.003G202500 [exp]	58.01	0.6420
					Potri.005G149601 [exp]	63.07	0.5971
AT5G25280			serine-rich protein-related (....		Potri.006G258600 [exp]	63.08	0.6466

Compare expression of checked genes

Potri.003G171400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.