Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G11780 468 / 2e-166 oxidoreductase, 2OG-Fe(II) oxygenase family protein (.1) AT3G14160 64 / 5e-11 2-oxoglutarate-dependent dioxygenase family protein (.1) AT5G01780 61 / 5e-10 2-oxoglutarate-dependent dioxygenase family protein (.1.2) AT3G14140 48 / 7e-06 2-oxoglutarate-dependent dioxygenase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G132300 [exp] 55 / 4e-08 AT5G01780 307 / 1e-101 2-oxoglutarate-dependent dioxygenase family protein (.1.2) Potri.003G070100 [exp] 49 / 4e-06 AT3G14160 348 / 2e-115 2-oxoglutarate-dependent dioxygenase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015782 [exp] 523 / 0 AT1G11780 473 / 8e-169 oxidoreductase, 2OG-Fe(II) oxygenase family protein (.1) Lus10037023 [exp] 522 / 0 AT1G11780 472 / 3e-168 oxidoreductase, 2OG-Fe(II) oxygenase family protein (.1) Lus10025260 [exp] 56 / 2e-08 AT3G14160 308 / 8e-102 2-oxoglutarate-dependent dioxygenase family protein (.1) Lus10009087 [exp] 53 / 2e-08 AT5G01780 176 / 1e-54 2-oxoglutarate-dependent dioxygenase family protein (.1.2) Lus10033471 [exp] 52 / 3e-07 AT3G14160 305 / 2e-100 2-oxoglutarate-dependent dioxygenase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0029 [poplar] [flax] Cupin PF13532 [poplar] [flax] 2OG-FeII_Oxy_2 2OG-Fe(II) oxygenase superfamily
Representative CDS sequence Show only first row Show all	>Potri.003G171900.1 pacid=42785661 polypeptide=Potri.003G171900.1.p locus=Potri.003G171900 ID=Potri.003G171900.1.v4.1 annot-version=v4.1 ATGTACGGCTCCGATAAAGCCGTTACCGACGACACAGATCGAACGGAATTCAGAAAAACAGAGAAGAAGTACAAACTTTACTACGATCAAAATTCTAAAA GGAAAAAGCAACCAAAACAAGTCGACTTATCAGAGGTTTTAGATTTCAAGTCATTTTTGGATTCTTATCATCAAAACGGTGAACTTCCTCCTGAAATTGT GGTTGTTGATTGCCGTTTTGATCGGCCCGTCTTCGGCTTGGAAAGTCGGCCTGGTTTTTATTTCATTCCGGGGGCATTGAGTGTTGATGAACAATGCCGA TGGATAAGGGAGAGCTTAATGAGTTTCCCTCAGCCTCCTAATAGAACGAATCACAATGCAATCTATGGGCCTATAAGTGACCTGTTTATTGCTGCGAAAG AGAGGAAAGTGTTGGTTGAGGATGAAAATATGCCTGCTAGTTCGGACTCTGCGTCAAATGGTTGTGTTGGCAATGGAGATACTCGTAGATGGAGTTTTTG CGAGGAAGATAGTGTTCTGTTAAGAGGGAAGTCTTGTAAGCCTGTTTCAGCTTCCGTCTTATTGCGGAAGTTGCGGTGGAGTACCCTTGGACTGCAATTT GATTGGTCTAAGCGTAACTACAATGTATCTCTTCCACATAACAAGATCCCTGATGGACTCTGTCAGTTGGCTAAAAAATTGGCCGCTCCTGCAATGCCCG TGGGAGAAGAATTCCACCCAGAAGCTGCAATAGTAAACTATTTTGCATCAGGAGATACACTTGGGGGCCACTTGGATGACATGGAAGCTGACTGGAGTAA ACCTATTGTAAGCATGAGTTTGGGTTGCAAGGCTATTTTCCTTTTGGGAGGAAAATCTAGAGAAGATCCACCTTTAGCAATGTTTCTCCGAAGTGGTGAT GTGGTTCTCATGGCTGGAGAAGCACGAGAATGCTTTCATGGTGTGCCTCGGATCTTCACTGACAAAGAAAATGCTGAAATCACAGCCCTTGAATTGCATT TCTGTGATGAGAATGATATCTTAGAATACATCAGAACCTCGAGAATCAACATTAACATCAGACAAGTGTTTTGA
AA sequence Show only first row Show all	>Potri.003G171900.1 pacid=42785661 polypeptide=Potri.003G171900.1.p locus=Potri.003G171900 ID=Potri.003G171900.1.v4.1 annot-version=v4.1 MYGSDKAVTDDTDRTEFRKTEKKYKLYYDQNSKRKKQPKQVDLSEVLDFKSFLDSYHQNGELPPEIVVVDCRFDRPVFGLESRPGFYFIPGALSVDEQCR WIRESLMSFPQPPNRTNHNAIYGPISDLFIAAKERKVLVEDENMPASSDSASNGCVGNGDTRRWSFCEEDSVLLRGKSCKPVSASVLLRKLRWSTLGLQF DWSKRNYNVSLPHNKIPDGLCQLAKKLAAPAMPVGEEFHPEAAIVNYFASGDTLGGHLDDMEADWSKPIVSMSLGCKAIFLLGGKSREDPPLAMFLRSGD VVLMAGEARECFHGVPRIFTDKENAEITALELHFCDENDILEYIRTSRININIRQVF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G11780			oxidoreductase, 2OG-Fe(II) oxy...		Potri.003G171900 [exp]	0	1
AT3G21280		UBP7	ubiquitin-specific protease 7 ...		Potri.003G033700 [exp]	2.44	0.7848	UBP6.1
AT1G44960			SNARE associated Golgi protein...		Potri.001G070800 [exp]	9.79	0.7655
AT2G03820			nonsense-mediated mRNA decay N...		Potri.004G121500 [exp]	14.59	0.7191
AT5G55070			Dihydrolipoamide succinyltrans...		Potri.011G089200 [exp]	15.39	0.8070
AT2G03820			nonsense-mediated mRNA decay N...		Potri.004G085700 [exp]	18.02	0.7215
AT5G14250		CSN3, FUS11, CO...	FUSCA 11, COP9 SIGNALOSOME SUB...		Potri.001G334200 [exp]	29.12	0.7513
AT2G35100		ARAD1	ARABINAN DEFICIENT 1, Exostosi...		Potri.012G124600 [exp]	34.29	0.7526
AT2G14110			Haloacid dehalogenase-like hyd...		Potri.017G043700 [exp]	81.21	0.7199
AT2G17420		NTR2, ATNTRA, N...	NADPH-DEPENDENT THIOREDOXIN RE...		Potri.001G456800 [exp]	90.11	0.7426
AT4G09720		AtRABG3a	RAB GTPase homolog G3A (.1.2.3...		Potri.002G062400 [exp]	95.62	0.7246	Pt-RAB7.2

Compare expression of checked genes

Potri.003G171900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.