Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G04280 63 / 5e-12 ARR22 response regulator 22 (.1.2.3) AT5G26594 62 / 2e-11 ARR24 response regulator 24 (.1) AT2G01830 47 / 2e-05 CRE1, AHK4, WOL1, WOL, ATCRE1 WOODEN LEG 1, WOODEN LEG, CYTOKININ RESPONSE 1, ARABIDOPSIS HISTIDINE KINASE 4, CHASE domain containing histidine kinase protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G172932 [exp] 523 / 0 AT5G26594 71 / 6e-15 response regulator 24 (.1) Potri.001G055500 [exp] 276 / 1e-90 AT5G26594 80 / 6e-18 response regulator 24 (.1) Potri.003G177400 [exp] 91 / 3e-21 AT3G04280 99 / 9e-26 response regulator 22 (.1.2.3) Potri.019G024900 [exp] 89 / 3e-21 AT5G26594 121 / 2e-36 response regulator 24 (.1) Potri.019G025000 [exp] 84 / 1e-19 AT5G26594 117 / 2e-34 response regulator 24 (.1) Potri.003G177300 [exp] 83 / 3e-18 AT3G04280 96 / 8e-25 response regulator 22 (.1.2.3) Potri.001G050900 [exp] 81 / 5e-17 AT3G04280 83 / 4e-19 response regulator 22 (.1.2.3) Potri.001G050800 [exp] 78 / 1e-16 AT5G26594 77 / 4e-18 response regulator 24 (.1) Potri.002G253000 [exp] 76 / 2e-16 AT5G26594 171 / 5e-56 response regulator 24 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004775 [exp] 77 / 5e-17 AT5G26594 98 / 2e-27 response regulator 24 (.1) Lus10005407 [exp] 53 / 2e-08 AT5G26594 135 / 2e-41 response regulator 24 (.1) Lus10028021 [exp] 44 / 2e-05 AT5G26594 99 / 3e-27 response regulator 24 (.1) Lus10028992 [exp] 43 / 0.0003 AT2G01830 1337 / 0.0 WOODEN LEG 1, WOODEN LEG, CYTOKININ RESPONSE 1, ARABIDOPSIS HISTIDINE KINASE 4, CHASE domain containing histidine kinase protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0304 [poplar] [flax] CheY PF00072 [poplar] [flax] Response_reg Response regulator receiver domain
Representative CDS sequence Show only first row Show all	>Potri.003G172200.1 pacid=42787514 polypeptide=Potri.003G172200.1.p locus=Potri.003G172200 ID=Potri.003G172200.1.v4.1 annot-version=v4.1 ATGGATGACATAGATCACACTCTAATTGATCTTGAAATCACTGACCTACTTGAACAACTGAGTCTTTGTCTTGAAAAGATCGGTCGAAGGATCGATGAAT CTCCCGAGGCACGCAGTGAAGTGATCCGGGTAATGAGGGAAGCAGCCAGCACAACCTACCAACAAACTTCAACCCATATGTCAATGGCCGAGGAAAACGC TCGAGTTTATCATAAGCTCGAGAAGACCGTTGCAGAACTGAATGGTTACATTTCTGAAAATGATCGAAAGATGATTGCATCTGCCAATGTGTTCGTAGAA GGAATCGAAGAACTGAAGAAAAACCGAGAAGCATCCACAATTCTATTCAATGAGTTAATGATCAATATGAGGGACATTGGTCAAGAAAGAAACCTTCTTG AAGCACGCAAAAAGATTGCTGATGTGAATCGATGGCTGAAAGAAAGGGCCGTTGTTATTGATGAAACCATGAAAGAGGAACATAGTGGAACTGGATTTGA TCAATCTGCTGCTCCTGGAAGGGAGCAAGATGTGCTTGGTTTGGGAAATGGAAGTGAAGAAGACACAGAGGGAAGCCGAAAAGGGAACAAACCGGGGCAT GAAGAAGTCAAGAGCATTCCGCAGGGTTCAAGTTCACCCGCTAGCGACAAGTTCTCTGTGCTTCTTGTGGAATATGACACTTGTGATCGCCTATTCAACA AGACACAGATAATCGATTTTGGAAAGGAATATAATATTGGGATGGAAGTTAAAGTGGCCAAAAGTGGACAAAAAGCTATTCATCTTCATAGTCAAGGGGC TTCTTTTGACCTCATTTTTATGGATATGGATATGCCTGCTCATGTAACGAGTGGGTATGAGGCAACAACACAGCTGCGAAGCTTATCTGGCGTGCAGAGT AACATTGTTGGCCTCACCTATACGCCAGAGTCTGAGCCAATAAATGAGTTCATTCGAGCAGGCCACCTAGATGGCTGTATTGGAAAGCCACTGACTGATG AAAAGATTGACTCTCTCATTCCTATTCCAAAAGGCAGTAACTGA
AA sequence Show only first row Show all	>Potri.003G172200.1 pacid=42787514 polypeptide=Potri.003G172200.1.p locus=Potri.003G172200 ID=Potri.003G172200.1.v4.1 annot-version=v4.1 MDDIDHTLIDLEITDLLEQLSLCLEKIGRRIDESPEARSEVIRVMREAASTTYQQTSTHMSMAEENARVYHKLEKTVAELNGYISENDRKMIASANVFVE GIEELKKNREASTILFNELMINMRDIGQERNLLEARKKIADVNRWLKERAVVIDETMKEEHSGTGFDQSAAPGREQDVLGLGNGSEEDTEGSRKGNKPGH EEVKSIPQGSSSPASDKFSVLLVEYDTCDRLFNKTQIIDFGKEYNIGMEVKVAKSGQKAIHLHSQGASFDLIFMDMDMPAHVTSGYEATTQLRSLSGVQS NIVGLTYTPESEPINEFIRAGHLDGCIGKPLTDEKIDSLIPIPKGSN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G04280		ARR22	response regulator 22 (.1.2.3)		Potri.003G172200 [exp]	0	1
AT5G16970		AT-AER	alkenal reductase (.1)		Potri.007G143250 [exp]	2.00	0.9182
AT1G64660		ATMGL	methionine gamma-lyase (.1)		Potri.003G146600 [exp]	2.82	0.9312
					Potri.007G088800 [exp]	8.12	0.9172
AT1G13680			PLC-like phosphodiesterases su...		Potri.004G117500 [exp]	9.38	0.9172
AT2G01275			RING/FYVE/PHD zinc finger supe...		Potri.004G093500 [exp]	16.24	0.8995
AT5G26594		ARR24	response regulator 24 (.1)		Potri.003G172932 [exp]	17.66	0.8762
AT5G66160		JR700, ATRMR1	ARABIDOPSIS THALIANA RECEPTOR ...		Potri.005G111100 [exp]	18.24	0.8885
AT1G67370		ASY1, ATASY1	ASYNAPTIC 1, DNA-binding HORMA...		Potri.001G055201 [exp]	18.33	0.8797
AT2G13570	CCAAT	NF-YB7	"nuclear factor Y, subunit B7"...		Potri.007G103901 [exp]	21.21	0.8858
AT1G53035			unknown protein		Potri.001G399900 [exp]	21.90	0.8752

Compare expression of checked genes

Potri.003G172200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.