Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G67325 374 / 2e-130 Ran BP2/NZF zinc finger-like superfamily protein (.1.2) AT2G17975 49 / 2e-06 zinc finger (Ran-binding) family protein (.1) AT1G50300 45 / 6e-05 TAF15 TBP-associated factor 15 (.1) AT1G55040 43 / 0.0004 zinc finger (Ran-binding) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G056000 [exp] 478 / 4e-171 AT1G67325 340 / 5e-118 Ran BP2/NZF zinc finger-like superfamily protein (.1.2) Potri.005G115100 [exp] 49 / 3e-06 AT2G17975 328 / 4e-113 zinc finger (Ran-binding) family protein (.1) Potri.012G046500 [exp] 44 / 0.0001 AT1G48570 338 / 3e-110 zinc finger (Ran-binding) family protein (.1) Potri.015G038200 [exp] 44 / 0.0001 AT1G48570 335 / 4e-111 zinc finger (Ran-binding) family protein (.1) Potri.008G085400 [exp] 43 / 0.0002 AT1G50300 339 / 6e-115 TBP-associated factor 15 (.1) Potri.010G170700 [exp] 42 / 0.0004 AT1G50300 320 / 2e-107 TBP-associated factor 15 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011357 [exp] 410 / 3e-141 AT1G67325 366 / 1e-124 Ran BP2/NZF zinc finger-like superfamily protein (.1.2) Lus10006412 [exp] 397 / 7e-139 AT1G67325 374 / 1e-130 Ran BP2/NZF zinc finger-like superfamily protein (.1.2) Lus10037029 [exp] 336 / 7e-115 AT1G67325 276 / 2e-92 Ran BP2/NZF zinc finger-like superfamily protein (.1.2) Lus10015776 [exp] 221 / 1e-70 AT1G67325 192 / 8e-61 Ran BP2/NZF zinc finger-like superfamily protein (.1.2) Lus10019433 [exp] 44 / 0.0001 AT2G26695 198 / 2e-65 Ran BP2/NZF zinc finger-like superfamily protein (.1) Lus10015180 [exp] 44 / 0.0002 AT1G55040 614 / 0.0 zinc finger (Ran-binding) family protein (.1) Lus10043289 [exp] 42 / 0.0003 AT2G26695 198 / 8e-66 Ran BP2/NZF zinc finger-like superfamily protein (.1) Lus10012902 [exp] 42 / 0.0005 AT1G50300 388 / 4e-134 TBP-associated factor 15 (.1) Lus10030555 [exp] 42 / 0.0006 AT1G50300 393 / 8e-135 TBP-associated factor 15 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0167 [poplar] [flax] Zn_Beta_Ribbon PF00641 [poplar] [flax] zf-RanBP Zn-finger in Ran binding protein and others
Representative CDS sequence Show only first row Show all	>Potri.003G172500.6 pacid=42785527 polypeptide=Potri.003G172500.6.p locus=Potri.003G172500 ID=Potri.003G172500.6.v4.1 annot-version=v4.1 ATGTCTCAGGTGGATAGCAGAAATTCATCAGCAGCGAAGCGTGCAAGAACTGACGGTAGTCGCAGGGAGGATGACTGGACTTGTCCAAGCTGCGGCAATG TCAACTTTTCATTCAGGACAACTTGTAATATGCGCAATTGTACCCAACCCAGGCCAGCTGATCATAATTCGAAATCTGCTGCCAAGCCCCTGCAAGCACC ACAGGGTTACTCATCAGCTCCATATTTAGGTTCTGGTGCACCTTCTTCAATGTATATGGGTATGCCACCATATGGGCCCTCCCTCTTCAATGGATCCTCT ATTCCTCCATATGACGTTCCGTTCACTGGGGGCTCAGCTTATCATTACAACTATGGCAGCCGCCTTTCTGGTGGCAGTCCATATAGACCGTTGCATATGT CAGGACCACCTCCATACTCTGGTGGATCTATGATGGGAAATGCTGGGATGTACGCGATGCCCCCCCTAATGGACCGGTATGGATTGGGTATGCCAATTGG CCCTGCAGCTATGGGGCCAAGGCCAGGTTTTTTCCCAGACGATAAATCTCAGAAGGGTTCAGATGCGACGCGTGATAATGACTGGGCATGCCCAAAATGT GGGAACGTTAACTTCTCTTTTAGAACTTTTTGCAACATGAGAAAGTGCAATACACCAAAGCCAGGATCTCAGGCTGCTAAGTCTGACAAAAATTCCAAAC AAAAAATGCCGGAGGGAAGCTGGAAGTGTGAAAAATGCAACAATATAAACTACCCATTCCGGACTAAGTGCAATAGACAAAATTGTGGGGCTGAGAAACC TTCTGAGTCGACGAAATCCCCTTCTCCAGAACCAGATGAGGTTGAACAGGTTTGTCATGTGATTCATCTTGATTGTATTTCCATTTCTTGTATGGAACTT TTATTTTCATTAATCACATATGTACTCTTCACAAATTCAATGACTACTAGTGAGAAGGATGTTTGGCTGACCCGTCTCCCTTCTTTCTCCCTGCTCTCCT TCTCATCTGTTATCTTCTTGAAATGCACTTCACTAATTGTCAATTATCTCTCTCATGGCAACCATTGA
AA sequence Show only first row Show all	>Potri.003G172500.6 pacid=42785527 polypeptide=Potri.003G172500.6.p locus=Potri.003G172500 ID=Potri.003G172500.6.v4.1 annot-version=v4.1 MSQVDSRNSSAAKRARTDGSRREDDWTCPSCGNVNFSFRTTCNMRNCTQPRPADHNSKSAAKPLQAPQGYSSAPYLGSGAPSSMYMGMPPYGPSLFNGSS IPPYDVPFTGGSAYHYNYGSRLSGGSPYRPLHMSGPPPYSGGSMMGNAGMYAMPPLMDRYGLGMPIGPAAMGPRPGFFPDDKSQKGSDATRDNDWACPKC GNVNFSFRTFCNMRKCNTPKPGSQAAKSDKNSKQKMPEGSWKCEKCNNINYPFRTKCNRQNCGAEKPSESTKSPSPEPDEVEQVCHVIHLDCISISCMEL LFSLITYVLFTNSMTTSEKDVWLTRLPSFSLLSFSSVIFLKCTSLIVNYLSHGNH

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G67325			Ran BP2/NZF zinc finger-like s...		Potri.003G172500 [exp]	0	1
AT1G68810	bHLH	bHLH030	basic helix-loop-helix (bHLH) ...		Potri.019G089000 [exp]	3.16	0.8775
AT5G10810		ATER	ARABIDOPSIS THALIANA ENHANCER ...		Potri.018G017300 [exp]	8.94	0.8595
AT5G42190		SKP1B, ASK2	Arabidopsis SKP-like 2, E3 ubi...		Potri.004G175900 [exp]	10.95	0.8372	Pt-SKP1.5
AT1G06730			pfkB-like carbohydrate kinase ...		Potri.002G042700 [exp]	12.48	0.8595
AT4G14430		PEC12, IBR10, E...	DELTA\(3\), DELTA\(2\)-ENOYL C...		Potri.010G073700 [exp]	12.72	0.8581
AT5G41070		DRB5	dsRNA-binding protein 5 (.1)		Potri.013G032400 [exp]	14.49	0.8414
AT4G01900		PII, P11, GLB1	GLNB1 homolog (.1)		Potri.002G191300 [exp]	16.61	0.7780	Pt-GLB1.1
AT3G06580		GAL1, GALK	GALACTOSE KINASE 1, Mevalonate...		Potri.010G148100 [exp]	18.65	0.8159	Pt-GAL1.3
AT5G12240			unknown protein		Potri.009G069000 [exp]	20.07	0.8374
AT2G34470		PSKF109, UREG	urease accessory protein G (.1...		Potri.002G243500 [exp]	21.49	0.8373	Pt-EU3.2

Compare expression of checked genes

Potri.003G172500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.