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JGI Phytozome v13

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Symbol

Arabidopsis homologues

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Locus ID	BLAST score/e-value	Alias	TAIR10 short description
AT1G62940	323 / 1e-106	ACOS5	acyl-CoA synthetase 5 (.1)
AT3G21240	141 / 2e-37	AT4CL2, 4CL2	4-coumarate:CoA ligase 2 (.1)
AT1G20510	135 / 1e-35	OPCL1	OPC-8:0 CoA ligase1 (.1.2)
AT1G51680	134 / 6e-35	AT4CL1, 4CL.1, 4CL1	ARABIDOPSIS THALIANA 4-COUMARATE:COA LIGASE 1, 4-coumarate:CoA ligase 1 (.1.2.3)
AT1G20480	130 / 2e-33		AMP-dependent synthetase and ligase family protein (.1)
AT3G21230	125 / 1e-31	4CL5	4-coumarate:CoA ligase 5 (.1)
AT5G63380	121 / 3e-30		AMP-dependent synthetase and ligase family protein (.1)
AT1G65060	120 / 7e-30	4CL3	4-coumarate:CoA ligase 3 (.1.2)
AT4G05160	119 / 1e-29		AMP-dependent synthetase and ligase family protein (.1)
AT4G19010	119 / 1e-29		AMP-dependent synthetase and ligase family protein (.1)

Paralogs

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Gene ID	BLAST score/e-value	At best hit	BLAST score/e-value	TAIR10 short description
Potri.001G055700 [exp]	421 / 2e-144	AT1G62940	786 / 0.0	acyl-CoA synthetase 5 (.1)
Potri.006G169700 [exp]	145 / 5e-39	AT3G21240	802 / 0.0	4-coumarate:CoA ligase 2 (.1)
Potri.002G012800 [exp]	140 / 7e-37	AT1G20510	769 / 0.0	OPC-8:0 CoA ligase1 (.1.2)
Potri.005G248500 [exp]	139 / 7e-37	AT1G20510	795 / 0.0	OPC-8:0 CoA ligase1 (.1.2)
Potri.018G094200 [exp]	139 / 2e-36	AT3G21240	807 / 0.0	4-coumarate:CoA ligase 2 (.1)
Potri.019G049500 [exp]	131 / 8e-34	AT1G65060	781 / 0.0	4-coumarate:CoA ligase 3 (.1.2)
Potri.003G188500 [exp]	129 / 3e-33	AT3G21240	741 / 0.0	4-coumarate:CoA ligase 2 (.1)
Potri.001G036900 [exp]	125 / 8e-32	AT3G21240	768 / 0.0	4-coumarate:CoA ligase 2 (.1)
Potri.008G031500 [exp]	124 / 4e-31	AT1G20510	466 / 3e-159	OPC-8:0 CoA ligase1 (.1.2)

Flax homologues

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Locus ID	BLAST score/e-value	At best hit	BLAST score/e-value	TAIR10 short description
Lus10025842 [exp]	331 / 2e-109	AT1G62940	793 / 0.0	acyl-CoA synthetase 5 (.1)
Lus10038259 [exp]	325 / 3e-107	AT1G62940	769 / 0.0	acyl-CoA synthetase 5 (.1)
Lus10026143 [exp]	146 / 3e-39	AT1G51680	838 / 0.0	ARABIDOPSIS THALIANA 4-COUMARATE:COA LIGASE 1, 4-coumarate:CoA ligase 1 (.1.2.3)
Lus10012280 [exp]	147 / 8e-39	AT1G20510	825 / 0.0	OPC-8:0 CoA ligase1 (.1.2)
Lus10015998 [exp]	143 / 6e-38	AT1G20510	833 / 0.0	OPC-8:0 CoA ligase1 (.1.2)
Lus10008677 [exp]	126 / 4e-32	AT1G51680	834 / 0.0	ARABIDOPSIS THALIANA 4-COUMARATE:COA LIGASE 1, 4-coumarate:CoA ligase 1 (.1.2.3)
Lus10005390 [exp]	124 / 3e-31	AT1G51680	827 / 0.0	ARABIDOPSIS THALIANA 4-COUMARATE:COA LIGASE 1, 4-coumarate:CoA ligase 1 (.1.2.3)
Lus10021431 [exp]	123 / 6e-31	AT4G05160	803 / 0.0	AMP-dependent synthetase and ligase family protein (.1)
Lus10038667 [exp]	122 / 1e-30	AT1G20510	449 / 1e-152	OPC-8:0 CoA ligase1 (.1.2)
Lus10015999 [exp]	122 / 2e-30	AT1G20510	692 / 0.0	OPC-8:0 CoA ligase1 (.1.2)

PFAM info

Clan ID	Clan name	Pfam ID	Pfam name	Pfam description
CL0378 [poplar] [flax]	ANL	PF00501 [poplar] [flax]	AMP-binding	AMP-binding enzyme

Representative CDS sequence

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>Potri.003G172651.1 pacid=42784761 polypeptide=Potri.003G172651.1.p locus=Potri.003G172651 ID=Potri.003G172651.1.v4.1 annot-version=v4.1

ATGGAAACTCCCATCCCATGCTCAGCAGAAGAGGAACATATTTTCCGAAGCCAGCATCCAGCAGTCCCGGTGCCGGACATCACACTCAATGATTTTGTAC

TCCAAGATGCTGAATTGTATGCTGACAAGGTAGCATTTGTGGAGGCTGTGACAGGAAAGACATACATATGCAGAGGGTCTAGGGTACCTATAATTGTACT

GAGTGAGATGTGCATTAGCACTGCCATGAATTGGAATGAACTGCTTGATGCAGCTGACCGCTCTGGCGATATACTTGCTTGTGAGGAAGTCCACCAGAGT

GATCTATGTGCACTTCCATTCTCATCAGGCACCACCGGGATGTCAAAGGGTGTGATGTTAACCCATCGGAATCTGGTGGCTAATTTGTGCTCCAGTCTCT

TTAGTGAAGACCCAGAAATGGTGGGTCATGTTGCCACACTGGGCCTAATTCCATTCTTTCACATATATGGTATCACTGGAATATGTTGTGCCACCCTAAG

GAACAAGGGGAAAGTAGTGGTGATGGGGAGGACATTTCTAAATGCGTTGATCACACAGGAGGTCAGTTTTGCACCAATTGTGCCACCAATTGGCTTACAA

GCTCAAACTGCAGCAGCTCCACTTGCCCCAGAGCTGCTCGCTGCCTTTGAAAACAAGTTCCCTGGCGTCCAAGTCCAAGAGGCATATGGACTGACAGAGC

ACAGCTGCATCACACTCACTCATGGGGATCCTAGTAAAGGCCATGGCATTGCAAAGAAAAACTCAGTAGGATTCCTCCTTCCCCATTTGGAAATCAAGCT

CATCGATCCTGAAACTGGTCGTAAGGAGGAGACGGGCAGGAGCATTGACACTGATGGATGGCTGCGCACTGGTGACATTGGGTTCTTAGACAATGATGGA

GATATCTTTATAGTGGATCGTATGAAAGAACTAATCAAGTACAAGGGCTTTCAAGTAAGATCAAACAGCTTGACTTTTCTCTTTTGGACATACTGTTACG

CAAGAATCATAAAGCAATGCCCACCATGGGGAAATAATGCGAGGGCTTCTTTTAATATACCAAAACCACCTTCAGGGAAATAA

AA sequence

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>Potri.003G172651.1 pacid=42784761 polypeptide=Potri.003G172651.1.p locus=Potri.003G172651 ID=Potri.003G172651.1.v4.1 annot-version=v4.1

METPIPCSAEEEHIFRSQHPAVPVPDITLNDFVLQDAELYADKVAFVEAVTGKTYICRGSRVPIIVLSEMCISTAMNWNELLDAADRSGDILACEEVHQS

DLCALPFSSGTTGMSKGVMLTHRNLVANLCSSLFSEDPEMVGHVATLGLIPFFHIYGITGICCATLRNKGKVVVMGRTFLNALITQEVSFAPIVPPIGLQ

AQTAAAPLAPELLAAFENKFPGVQVQEAYGLTEHSCITLTHGDPSKGHGIAKKNSVGFLLPHLEIKLIDPETGRKEETGRSIDTDGWLRTGDIGFLDNDG

DIFIVDRMKELIKYKGFQVRSNSLTFLFWTYCYARIIKQCPPWGNNARASFNIPKPPSGK

DESeq2's median of ratios [POPLAR]

Coexpressed genes

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Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G62940		ACOS5	acyl-CoA synthetase 5 (.1)		Potri.003G172651 [exp]	0	1

Potri.003G172651 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.

Plant FIBer expression Database

Potri.003G172651 [POPLAR]

DESeq2's median of ratios [POPLAR]

Coexpressed genes

Potri.003G172651 coexpression network