Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G29790 53 / 2e-07 unknown protein AT2G19390 50 / 1e-06 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G172800 [exp] 431 / 9e-152 AT3G04280 76 / 2e-16 response regulator 22 (.1.2.3) Potri.003G172866 [exp] 189 / 3e-56 AT3G04280 85 / 2e-19 response regulator 22 (.1.2.3) Potri.003G177400 [exp] 106 / 3e-27 AT3G04280 99 / 9e-26 response regulator 22 (.1.2.3) Potri.001G050800 [exp] 103 / 2e-26 AT5G26594 77 / 4e-18 response regulator 24 (.1) Potri.003G177300 [exp] 94 / 7e-23 AT3G04280 96 / 8e-25 response regulator 22 (.1.2.3) Potri.001G055650 [exp] 66 / 4e-12 AT4G29790 57 / 2e-08 unknown protein Potri.006G146700 [exp] 57 / 1e-09 AT4G29790 203 / 2e-60 unknown protein Potri.006G146600 [exp] 57 / 5e-09 AT2G19390 1068 / 0.0 unknown protein Potri.001G050900 [exp] 54 / 4e-08 AT3G04280 83 / 4e-19 response regulator 22 (.1.2.3)
Flax homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.003G172701.1 pacid=42787256 polypeptide=Potri.003G172701.1.p locus=Potri.003G172701 ID=Potri.003G172701.1.v4.1 annot-version=v4.1 ATGGCTGGCAAAGATAACACTCAAATTGAACTTAAAAGTAAGATGCTATTTTTAGAATTGGATCATTTCATTGCAAAATCACAAGAAAAGAGTGATCGCA GCTCCAAAGAAATCACTGCTGCCAAGTTCTTCAAGATAGAAGTTGAAGCATCAGTTATTGCAAGAAACAATCTTGGTCAAGAAGTAAGTGTCAAGATTGA TAAGGCAAGGCAGTGGCTGAATCAGAAGATGGATGAATTCAAGATAGAAGAAGATAGTCATGAGAATAAAGGGCTCATTGTTTCAATGCTGATTTCAAGC AACTCCAAGCTGAATTTCTTTCAGTGCTTGCCTTCTGATCAAGAAGCAATGGCCGCTGACCACCATAAGTCTAGTCTTCGAGGAGGCAATAAGCAACTGA TGAATGCTGCTCTCGGCATTTCAGAGGATACATTGCCTGGTCCTTGGAATCCCTTACCTGAGGAAATTGAGCGAGTCAAGGCTGCTGTATGTGAATGCTT GGACAAGGCCAGAGTCACGAAGAGATTAATTCGTTCATCAATGGCTGACGAAGATAACGCTCAAATTGATCCAGAAACTCAGAATCTTGTTAAGAAACTA GATGAGTACATTGCGAAGTTTGATCAAAAGAGGCAGGTTTTACAGAACGCAATTGAGTCAGAAACCGAAGCACTCAAGAAAGATCAAAATGAAACCAGGG AACTAAGGTTGAGTCTTGTTCACGAATCTGGTACTGCTACGAGCAGCAACATTGAAGCTGGAAGCCGGAAGATTGCTAATGTGAAGCAATGGCTGAATCA GAAGGCACTGATCAGTGGTGACACTAGTGGAGATCATGATCAGGGGCATGTGTATTTGCTCTTAAATAATAATTGTTTACGTTGA
AA sequence Show only first row Show all	>Potri.003G172701.1 pacid=42787256 polypeptide=Potri.003G172701.1.p locus=Potri.003G172701 ID=Potri.003G172701.1.v4.1 annot-version=v4.1 MAGKDNTQIELKSKMLFLELDHFIAKSQEKSDRSSKEITAAKFFKIEVEASVIARNNLGQEVSVKIDKARQWLNQKMDEFKIEEDSHENKGLIVSMLISS NSKLNFFQCLPSDQEAMAADHHKSSLRGGNKQLMNAALGISEDTLPGPWNPLPEEIERVKAAVCECLDKARVTKRLIRSSMADEDNAQIDPETQNLVKKL DEYIAKFDQKRQVLQNAIESETEALKKDQNETRELRLSLVHESGTATSSNIEAGSRKIANVKQWLNQKALISGDTSGDHDQGHVYLLLNNNCLR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G29790			unknown protein		Potri.003G172701 [exp]	0	1
AT3G60510			ATP-dependent caseinolytic (Cl...		Potri.001G156900 [exp]	13.00	0.9366
AT5G13930		ATCHS, TT4, CHS	TRANSPARENT TESTA 4, CHALCONE ...		Potri.012G138800 [exp]	18.22	0.9364	CHSL2
AT5G06720		ATPA2	peroxidase 2 (.1)		Potri.003G214800 [exp]	22.38	0.9347	Pt-PRX1.16
AT3G25830		ATTPS-CIN	"terpene synthase-like sequenc...		Potri.019G022338 [exp]	25.84	0.9337
AT3G11680			Aluminium activated malate tra...		Potri.016G070100 [exp]	29.91	0.9334
AT4G16740		ATTPS03	terpene synthase 03 (.1.2)		Potri.019G023000 [exp]	31.55	0.9327
AT4G24340			Phosphorylase superfamily prot...		Potri.019G050200 [exp]	35.00	0.9326
AT3G57650		LPAT2	lysophosphatidyl acyltransfera...		Potri.009G054500 [exp]	37.84	0.9322
AT3G14880			unknown protein		Potri.001G390100 [exp]	38.15	0.8678
AT4G35160			O-methyltransferase family pro...		Potri.019G093100 [exp]	40.02	0.9321

Compare expression of checked genes

Potri.003G172701 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.