Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G04280 77 / 1e-16 ARR22 response regulator 22 (.1.2.3) AT5G26594 72 / 5e-15 ARR24 response regulator 24 (.1) AT2G19390 73 / 2e-13 unknown protein AT4G29790 72 / 2e-13 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G172701 [exp] 428 / 3e-150 AT4G29790 53 / 1e-07 unknown protein Potri.003G172866 [exp] 348 / 9e-116 AT3G04280 85 / 2e-19 response regulator 22 (.1.2.3) Potri.003G177400 [exp] 270 / 6e-89 AT3G04280 99 / 9e-26 response regulator 22 (.1.2.3) Potri.003G177300 [exp] 253 / 1e-82 AT3G04280 96 / 8e-25 response regulator 22 (.1.2.3) Potri.001G050800 [exp] 213 / 2e-67 AT5G26594 77 / 4e-18 response regulator 24 (.1) Potri.001G051000 [exp] 172 / 5e-50 AT5G26594 82 / 7e-19 response regulator 24 (.1) Potri.003G172750 [exp] 160 / 1e-48 AT3G04280 80 / 1e-20 response regulator 22 (.1.2.3) Potri.001G050900 [exp] 146 / 4e-40 AT3G04280 83 / 4e-19 response regulator 22 (.1.2.3) Potri.001G055650 [exp] 106 / 3e-25 AT4G29790 57 / 2e-08 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004775 [exp] 79 / 2e-17 AT5G26594 98 / 2e-27 response regulator 24 (.1) Lus10005407 [exp] 65 / 2e-12 AT5G26594 135 / 2e-41 response regulator 24 (.1) Lus10028021 [exp] 59 / 2e-10 AT5G26594 99 / 3e-27 response regulator 24 (.1) Lus10031600 [exp] 50 / 3e-06 AT2G47430 624 / 0.0 CYTOKININ-INDEPENDENT 1, Signal transduction histidine kinase (.1) Lus10033746 [exp] 47 / 3e-05 AT2G47430 615 / 0.0 CYTOKININ-INDEPENDENT 1, Signal transduction histidine kinase (.1) Lus10028992 [exp] 44 / 0.0003 AT2G01830 1337 / 0.0 WOODEN LEG 1, WOODEN LEG, CYTOKININ RESPONSE 1, ARABIDOPSIS HISTIDINE KINASE 4, CHASE domain containing histidine kinase protein (.1.2.3) Lus10003686 [exp] 43 / 0.0005 AT2G01830 1330 / 0.0 WOODEN LEG 1, WOODEN LEG, CYTOKININ RESPONSE 1, ARABIDOPSIS HISTIDINE KINASE 4, CHASE domain containing histidine kinase protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0304 [poplar] [flax] CheY PF00072 [poplar] [flax] Response_reg Response regulator receiver domain
Representative CDS sequence Show only first row Show all	>Potri.003G172800.2 pacid=42786933 polypeptide=Potri.003G172800.2.p locus=Potri.003G172800 ID=Potri.003G172800.2.v4.1 annot-version=v4.1 ATGGCTGTGGAAGATAACACTCAAATTGAGCTTGAAAGTAAGATGCTATTTTCAGAATTGGATCATTTCATTGCAAAATCACAAGAAAAGAGTGATCGCT GCTCCAAAGAAATCATTGCTGCCAAGTCCTTCAAGATAGAAATTGAAGCATCAGTTATCACAAGAAACAATCTTGATCAACAAGTAAGGGCCAAGATTGA TAAAGCAAGGCAATGGCTGAATCAGAAGATAGATGAATTCAAGACAAAAGAAGGTAGTCATGAGGATATAGGGCTGATTGCTGCATCGCCGATTTCAAGC AACTCCAAGCAGAATTTCTTTCAGTGCTTGCCTTCTGATCCGGAAGCAATGGCTGCCGACCACCGTAAGTCTAGTCTTCAAGGAGGCACTGAGCAACTGA TGAGTACTGCTCTTGGCATTTCGGAGGATACATTGCCTGGTTCTTGGAATCCCTTACCTGAGGAAATTGAGCGGGTCAAGGCTTCTGTACGTGAAGGCTT GGACAAGGCCAGGGAACGTTCATTCGTTTATAAAGAAGCCTTGTCCGATTTGGATAAGTTTTTGTCAAAAAGTTTACCATCAAAGACAACTGATATTGAT GAATCAAAGAAAGAAGACAATGGGAATGCATTTAGTCATTCTGGGGAACAAGCTATGGCTGACGAAGATTACACTCAACTTGATCCAGAAATCCATAATC TAGTTAAGAAACTAGATGAGTGCATTGCAAAGATTGATCAAAAGAGGCAGGTTTTAGAGAATGCAATTGAGTCAGAAATCGAAGCACTCAAGAAAGATCA AAATGAAACCAGGGAACTAAGGTTGAATCTTCTTCACGAATCTGGTGCTACGAGCAGCAACATTGAAGCTGGAAGCCGGAAGATTGCTAATGTGAAGCAA TGGCTGAATCAGAAGGCACTGATCAGTGGTGACACTAGTGGAGACCATGATCAGGGCAATAATTACTCTGTGCTTATTGTTCATGATGATCGTGATGCTC GAGACATCATTTGGAGATACGTGATGGTAGTTGGGACAGAGAAGCACTTTACATTGGAATTTCAAGAGGCGAGGAATGGGAAAGAAGCTGTTTATCTTCA TCTTGCTGGGGCTTCTTTTGATCTCATTATTATGGACGATCAAATGCCCATCATGACTGGAATACAGGCAACACAGCTGTTACGTAAGATGGGTGTTAAG AGTCAGATTATAGGTTTCGCTTCTGAGTCTGTCCAACAAGCTTTTATCGACGCTGGCGCCGACGAATGCCTTCAAATGCCACTGGATACCGAATAG
AA sequence Show only first row Show all	>Potri.003G172800.2 pacid=42786933 polypeptide=Potri.003G172800.2.p locus=Potri.003G172800 ID=Potri.003G172800.2.v4.1 annot-version=v4.1 MAVEDNTQIELESKMLFSELDHFIAKSQEKSDRCSKEIIAAKSFKIEIEASVITRNNLDQQVRAKIDKARQWLNQKIDEFKTKEGSHEDIGLIAASPISS NSKQNFFQCLPSDPEAMAADHRKSSLQGGTEQLMSTALGISEDTLPGSWNPLPEEIERVKASVREGLDKARERSFVYKEALSDLDKFLSKSLPSKTTDID ESKKEDNGNAFSHSGEQAMADEDYTQLDPEIHNLVKKLDECIAKIDQKRQVLENAIESEIEALKKDQNETRELRLNLLHESGATSSNIEAGSRKIANVKQ WLNQKALISGDTSGDHDQGNNYSVLIVHDDRDARDIIWRYVMVVGTEKHFTLEFQEARNGKEAVYLHLAGASFDLIIMDDQMPIMTGIQATQLLRKMGVK SQIIGFASESVQQAFIDAGADECLQMPLDTE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G04280		ARR22	response regulator 22 (.1.2.3)		Potri.003G172800 [exp]	0	1
					Potri.005G031948 [exp]	9.79	0.9126
AT5G05800			unknown protein		Potri.010G045701 [exp]	16.97	0.9126
AT3G57440			unknown protein		Potri.006G050900 [exp]	19.07	0.8869
					Potri.002G132850 [exp]	20.39	0.9074
					Potri.004G075950 [exp]	25.69	0.8984
					Potri.019G014330 [exp]	29.10	0.9006
AT1G67950			RNA-binding (RRM/RBD/RNP motif...		Potri.010G103600 [exp]	36.00	0.8864
					Potri.003G073450 [exp]	37.46	0.8680
					Potri.008G069050 [exp]	38.67	0.8861
AT3G23770			O-Glycosyl hydrolases family 1...		Potri.001G321900 [exp]	40.24	0.8824	A6.1

Compare expression of checked genes

Potri.003G172800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.