Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G04280 84 / 3e-19 ARR22 response regulator 22 (.1.2.3) AT5G26594 79 / 2e-17 ARR24 response regulator 24 (.1) AT4G29790 57 / 4e-08 unknown protein AT2G19390 55 / 1e-07 unknown protein AT2G17820 44 / 0.0004 AHK1, ATHK1 histidine kinase 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G172800 [exp] 349 / 3e-116 AT3G04280 76 / 2e-16 response regulator 22 (.1.2.3) Potri.003G177400 [exp] 270 / 7e-88 AT3G04280 99 / 9e-26 response regulator 22 (.1.2.3) Potri.003G177300 [exp] 239 / 4e-76 AT3G04280 96 / 8e-25 response regulator 22 (.1.2.3) Potri.001G050800 [exp] 201 / 1e-61 AT5G26594 77 / 4e-18 response regulator 24 (.1) Potri.003G172701 [exp] 187 / 2e-55 AT4G29790 53 / 1e-07 unknown protein Potri.003G172750 [exp] 164 / 4e-49 AT3G04280 80 / 1e-20 response regulator 22 (.1.2.3) Potri.001G051000 [exp] 163 / 8e-46 AT5G26594 82 / 7e-19 response regulator 24 (.1) Potri.001G050900 [exp] 135 / 1e-35 AT3G04280 83 / 4e-19 response regulator 22 (.1.2.3) Potri.001G055650 [exp] 107 / 2e-25 AT4G29790 57 / 2e-08 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004775 [exp] 85 / 1e-19 AT5G26594 98 / 2e-27 response regulator 24 (.1) Lus10005407 [exp] 64 / 7e-12 AT5G26594 135 / 2e-41 response regulator 24 (.1) Lus10028021 [exp] 60 / 1e-10 AT5G26594 99 / 3e-27 response regulator 24 (.1) Lus10031600 [exp] 48 / 2e-05 AT2G47430 624 / 0.0 CYTOKININ-INDEPENDENT 1, Signal transduction histidine kinase (.1) Lus10033746 [exp] 45 / 0.0002 AT2G47430 615 / 0.0 CYTOKININ-INDEPENDENT 1, Signal transduction histidine kinase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0304 [poplar] [flax] CheY PF00072 [poplar] [flax] Response_reg Response regulator receiver domain
Representative CDS sequence Show only first row Show all	>Potri.003G172866.1 pacid=42786995 polypeptide=Potri.003G172866.1.p locus=Potri.003G172866 ID=Potri.003G172866.1.v4.1 annot-version=v4.1 ATGGATGAAGTCACGACAGAAGAAGATAGTCAAGAGAAAAAAGGGCTCATTGTTTCAATGCCGATTTCAAGCGATTCCAATCTAACAAGAAGCAGCTCTC GAGTAGCCAGTGGAGAAGCGCTGAATTTCTTTCTGTGCTTGCCTTCTGATCCTGAAGCAATGGCTGCAGACCACCATATGTCTTGTCTTCTAGGATGCTT TGAGCAACTGATGAATACTGTTCTTGGCGTGTCTGCTGAAATTGAGAGAATCAAGGCTGGTGTAAGTGCAGGCTTGGAAAAGGCCAGGGAAAGTTCATTC GTTTTTAAAGAGGCCTTATCCGAATTGGATGAGTTTTCCCCAAATAGTTTACCATCAAAGACAACTGATATTGATGAATCCAACAAAGAAGACGACAATA GGAATGCATCTGATCATTCTGGAGAACAAGGAAAGGAACACGCTTTGCCTAGTAAGAAGCAAGATGGGGGAGATGCAGAAGAAGACAATAGGAATGCATC TGATCATCCTGGGGAACGAGGAAATGAACACGCTTTGCCTAGTAAGAAGCAAGATGGCGGAGATGCAGAAGAAGACAATAGGAATGCATCTGATCATTCC GGAGAACAAGGAAAGGAACACGCTTTGCCTAGTAAGAAGCAAGATGACGGAGAAGCAGAAGAAGACAATAGGAAGGCATCTGATCATCCTGGGGAACAAG GAAATGAACACGCTTTGCCTAGTAAGAAGCAAGAAGGTGGAGATGCAGAAGAAGACAATAGGAATGCACTTGATCACTCTGCGAAACAAGGAAAGGAACA AGCTTTGCTTAGCAAGAAGCAAGATGGTGGAGATGCAGAAGAAATCACGAAGCCATTAATTCCTTCATCAATGGCTGACGAAGATAACACTCAAATTGAC CAAGAAATTCAGAATCTTGTTAAGAAACTCGATGTGTGCATTGCAAAGTTTGATCAAAAGAGGCAGGTTTTACAGAAAGCAATTGAGTCAGAAACCGAAG CACTCAAGAAAGATCAAAGGGAAACCAGGGAACTAAGGTTGAATCTTCTTCACGAATCTGGTGCTACGAGCAGCAACATTGAAGCTGGAAGCCGGAAGAT TGCTAATGTGAAGCAATGGCTGAATCAGAAGGCACTGATCAGTAGTGACACTAGTGGAGAACATGATCAGGGCAATAATTACTCTGTGCTTGTTGTTGAT GATGATCGTGATGCTCGAGACACCATTCAGAGATACACGATGCCAGTAGGGACAGAAAAGCATCGTGCAATGGAATTTCAAGAGGCGAAGAATGGGAAAG AAGCTGTTTATCTTCATCTTGCTGGGGCTTCTTTTGATCTCATTATTATGGACGATCAAATGCCCATCATGACTGGAATTCAGGCAACACAGCTGTTACG TAAGATGGGTGTTAAGAGTCAGATTGTAGGTGTCACTTCTGAGTCTGACCAACAAGCTTTCATCGACGCTGGCCTCAACACCTGCATTCGAAAGCCACGG AGTCTTGCATAG
AA sequence Show only first row Show all	>Potri.003G172866.1 pacid=42786995 polypeptide=Potri.003G172866.1.p locus=Potri.003G172866 ID=Potri.003G172866.1.v4.1 annot-version=v4.1 MDEVTTEEDSQEKKGLIVSMPISSDSNLTRSSSRVASGEALNFFLCLPSDPEAMAADHHMSCLLGCFEQLMNTVLGVSAEIERIKAGVSAGLEKARESSF VFKEALSELDEFSPNSLPSKTTDIDESNKEDDNRNASDHSGEQGKEHALPSKKQDGGDAEEDNRNASDHPGERGNEHALPSKKQDGGDAEEDNRNASDHS GEQGKEHALPSKKQDDGEAEEDNRKASDHPGEQGNEHALPSKKQEGGDAEEDNRNALDHSAKQGKEQALLSKKQDGGDAEEITKPLIPSSMADEDNTQID QEIQNLVKKLDVCIAKFDQKRQVLQKAIESETEALKKDQRETRELRLNLLHESGATSSNIEAGSRKIANVKQWLNQKALISSDTSGEHDQGNNYSVLVVD DDRDARDTIQRYTMPVGTEKHRAMEFQEAKNGKEAVYLHLAGASFDLIIMDDQMPIMTGIQATQLLRKMGVKSQIVGVTSESDQQAFIDAGLNTCIRKPR SLA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G04280		ARR22	response regulator 22 (.1.2.3)		Potri.003G172866 [exp]	0	1
AT1G11925			Stigma-specific Stig1 family p...		Potri.011G008932 [exp]	3.74	0.8082
					Potri.017G127501 [exp]	4.89	0.9385
AT5G09620			Octicosapeptide/Phox/Bem1p fam...		Potri.002G108800 [exp]	6.32	0.9385
					Potri.003G194950 [exp]	6.92	0.9385
AT3G63520		ATNCED1, ATCCD1...	carotenoid cleavage dioxygenas...		Potri.018G043500 [exp]	8.94	0.8901
AT4G34880			Amidase family protein (.1)		Potri.004G169400 [exp]	9.00	0.8735
AT1G07390		AtRLP1	receptor like protein 1 (.1.2....		Potri.001G064900 [exp]	10.00	0.8676
AT4G27300			S-locus lectin protein kinase ...		Potri.010G018050 [exp]	10.95	0.8322
AT3G59850			Pectin lyase-like superfamily ...		Potri.007G144400 [exp]	11.00	0.8433
AT2G32660		AtRLP22	receptor like protein 22 (.1)		Potri.001G437800 [exp]	11.95	0.8279

Compare expression of checked genes

Potri.003G172866 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.