Plant FIBer expression Database

Potri.003G172932 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G26594 72 / 5e-15 ARR24 response regulator 24 (.1)
AT3G04280 71 / 7e-15 ARR22 response regulator 22 (.1.2.3)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.003G172200
[exp]
523 / 0 AT3G04280 63 / 6e-12 response regulator 22 (.1.2.3)
Potri.001G055500
[exp]
275 / 4e-90 AT5G26594 80 / 6e-18 response regulator 24 (.1)
Potri.003G177300
[exp]
96 / 7e-23 AT3G04280 96 / 8e-25 response regulator 22 (.1.2.3)
Potri.019G024900
[exp]
90 / 1e-21 AT5G26594 121 / 2e-36 response regulator 24 (.1)
Potri.001G050900
[exp]
94 / 2e-21 AT3G04280 83 / 4e-19 response regulator 22 (.1.2.3)
Potri.003G177400
[exp]
92 / 2e-21 AT3G04280 99 / 9e-26 response regulator 22 (.1.2.3)
Potri.019G025000
[exp]
85 / 7e-20 AT5G26594 117 / 2e-34 response regulator 24 (.1)
Potri.009G108000
[exp]
82 / 1e-18 AT5G26594 163 / 5e-53 response regulator 24 (.1)
Potri.002G253000
[exp]
80 / 5e-18 AT5G26594 171 / 5e-56 response regulator 24 (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10004775
[exp]
75 / 2e-16 AT5G26594 98 / 2e-27 response regulator 24 (.1)
Lus10005407
[exp]
58 / 5e-10 AT5G26594 135 / 2e-41 response regulator 24 (.1)
Lus10028021
[exp]
45 / 9e-06 AT5G26594 99 / 3e-27 response regulator 24 (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0304 CheY PF00072 Response_reg Response regulator receiver domain
Representative CDS sequence
>Potri.003G172932.1 pacid=42787525 polypeptide=Potri.003G172932.1.p locus=Potri.003G172932 ID=Potri.003G172932.1.v4.1 annot-version=v4.1
ATGGCCACATATCACACTCTCATTGAACATGAAATCTCTCACATACTTGAACAGCTGAGTTTTTGTCTTGGAAACTTCAGTCAAAGGATGAATGAATCTC
CCAAGGCTCGCAGAGAAGTAATCCAAATAATAAGGGAAGGAGCTAGAAAAACCTCCCAAGAAAGTTCAACCCATATGTTAATGGCTGACGAAACCTCTCA
AGTTTGTTATAACCTTGAGAGTACCGTTGCAGAACTGAATGATTACATTACTGAAACTGGTCGAAAGATGATTGCATCTGCCAATGTGTTCACGGAAGGC
ATCGAAGAACTGAAGAAAAACCGAGAAGAATCCTTAAAGTTATTCAGTGATTTAGTGATCAATATGAGGGGCATTGGTCGTGGAATAAGCCTTCTTGAAG
CACGCAAAAAGATTGCTTATGTGAATCGATGGCTGAAAGAAAGGACCGTTGTTATTGATGAAACCATGAAAGAGGAACATAGTGCAACTGGATTTGATCA
AACTACTGCTCCTGGAAGGGAGCAAGATGTGCTTGGTTTGGGGAATGGTAGTGAAGAAGACGCAGAGGGAAGCCGAAAAGAGAAGAAACCGGGGCATGAA
GAGGTCAAGAGCAGCTCACAGGGTTCAAGTTCAACCGCTAGCGACAAGTTCTCTGTGCTTCTTGTGGAATATGAATCTTCTGATCGCTTATTCAACAACA
CGCAGATAATCGAGTTTGGAAGGGAATATAATCTTGGGATGGAAGTTAAAGTGGCCAAAAGTGGAGAAAAAGCTATTTATCTTCATAGTCAAGGGGCTTC
TTTTGACCTCATTCTTATGGATATGGATATGCCTGCTCATGTAACGAGTGGATATGAGGCAACAACACAGCTGCGAAGCTTATTTGGTGTGGAGAGTAAC
ATTGTTGGTCTCACCTATACGTCAGAGTCTGAGGAAATAAATGAGTTCATTCGAGCAGGCCACCTAAATGGCTGTATTGAAAAGCCACTGACTGATGAAA
AGATTGACTCTCTCATTCCTATTCCGGAAGGCAATAACTTACCCACAGCAGGAAGACAAAGGACTGCTCTATCCATGAGCTTTATGATTTGA
AA sequence
>Potri.003G172932.1 pacid=42787525 polypeptide=Potri.003G172932.1.p locus=Potri.003G172932 ID=Potri.003G172932.1.v4.1 annot-version=v4.1
MATYHTLIEHEISHILEQLSFCLGNFSQRMNESPKARREVIQIIREGARKTSQESSTHMLMADETSQVCYNLESTVAELNDYITETGRKMIASANVFTEG
IEELKKNREESLKLFSDLVINMRGIGRGISLLEARKKIAYVNRWLKERTVVIDETMKEEHSATGFDQTTAPGREQDVLGLGNGSEEDAEGSRKEKKPGHE
EVKSSSQGSSSTASDKFSVLLVEYESSDRLFNNTQIIEFGREYNLGMEVKVAKSGEKAIYLHSQGASFDLILMDMDMPAHVTSGYEATTQLRSLFGVESN
IVGLTYTSESEEINEFIRAGHLNGCIEKPLTDEKIDSLIPIPEGNNLPTAGRQRTALSMSFMI

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G26594 ARR24 response regulator 24 (.1) Potri.003G172932
[exp]
0 1
Potri.007G088800
[exp]
3.46 0.9309
AT4G01240 S-adenosyl-L-methionine-depend... Potri.004G116900
[exp]
4.69 0.9275
AT5G16970 AT-AER alkenal reductase (.1) Potri.007G143250
[exp]
7.14 0.8902
AT1G64660 ATMGL methionine gamma-lyase (.1) Potri.003G146600
[exp]
8.48 0.9208
AT4G27730 ATOPT6 ARABIDOPSIS THALIANA OLIGOPEPT... Potri.012G019500
[exp]
8.94 0.9244
AT5G08560 transducin family protein / WD... Potri.010G254300
[exp]
10.53 0.8591
AT1G17200 Uncharacterised protein family... Potri.011G140200
[exp]
11.18 0.9224
AT3G57450 unknown protein Potri.012G032500
[exp]
12.12 0.9120
AT5G05820 Nucleotide-sugar transporter f... Potri.009G040800
[exp]
16.43 0.9051
AT1G13680 PLC-like phosphodiesterases su... Potri.004G117500
[exp]
16.73 0.9050

Potri.003G172932 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.