Plant FIBer expression Database

Potri.003G173000 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G67350 149 / 2e-48 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G055400
[exp]
187 / 1e-63 AT1G67350 152 / 8e-50 unknown protein
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10015785
[exp]
157 / 1e-51 AT1G67350 146 / 2e-47 unknown protein
Lus10037020
[exp]
157 / 1e-50 AT1G67350 145 / 7e-46 unknown protein
PFAM info
Representative CDS sequence
>Potri.003G173000.1 pacid=42786740 polypeptide=Potri.003G173000.1.p locus=Potri.003G173000 ID=Potri.003G173000.1.v4.1 annot-version=v4.1
ATGGGGTTTATCATGGAATTTGCTGAGAATTTGATTCTGAGGTTAATGGAGGATCCAAAGGAGAGGGACCGGAAGTTCAGGGAGCGTGTATATGCAGTTA
AGGATCGATGCCAAAAGACCAAGGAAATGTGGAGCTATCCTCTTCGCCCTTATGGGTTTTGGACATTTGAGCGCCACAATGCGCAGCTTGCTTGGGATGC
TAAGATTAGCCAGGTACCTGGTCGGAGGGACCCCTATGATGACCTCCTTCAAGATAGTTATGGCTTCCCCAAGTGA
AA sequence
>Potri.003G173000.1 pacid=42786740 polypeptide=Potri.003G173000.1.p locus=Potri.003G173000 ID=Potri.003G173000.1.v4.1 annot-version=v4.1
MGFIMEFAENLILRLMEDPKERDRKFRERVYAVKDRCQKTKEMWSYPLRPYGFWTFERHNAQLAWDAKISQVPGRRDPYDDLLQDSYGFPK

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G67350 unknown protein Potri.003G173000
[exp]
0 1
AT4G34700 CIB22, AtCIB22 B22 subunit of eukaryotic mito... Potri.009G124600
[exp]
1.73 0.9203
AT1G76200 unknown protein Potri.005G248600
[exp]
2.82 0.8907
AT5G20090 Uncharacterised protein family... Potri.012G095133
[exp]
3.31 0.8863
AT1G61150 LisH and RanBPM domains contai... Potri.011G046200
[exp]
3.46 0.8850
AT5G09900 RPN5A, MSA, EMB... REGULATORY PARTICLE NON-ATPASE... Potri.005G087100
[exp]
3.87 0.8831
AT1G14450 NADH dehydrogenase (ubiquinone... Potri.004G229900
[exp]
4.47 0.9188
AT1G47420 SDH5 succinate dehydrogenase 5 (.1) Potri.014G032400
[exp]
5.19 0.9053
AT4G29480 Mitochondrial ATP synthase sub... Potri.006G231900
[exp]
6.16 0.8401
AT5G47570 unknown protein Potri.001G122200
[exp]
6.32 0.9040
AT4G30010 unknown protein Potri.018G142500
[exp]
7.34 0.8930

Potri.003G173000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.