Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-TOM20.2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G27080 208 / 1e-68 TOM20-3 translocase of outer membrane 20 kDa subunit 3 (.1) AT1G27390 207 / 3e-68 TOM20-2 translocase outer membrane 20-2 (.1) AT5G40930 176 / 3e-56 TOM20-4 translocase of outer membrane 20-4 (.1) AT3G27070 163 / 5e-51 TOM20-1 translocase outer membrane 20-1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G054900 [exp] 337 / 2e-119 AT1G27390 230 / 4e-77 translocase outer membrane 20-2 (.1) Potri.001G330200 [exp] 227 / 4e-76 AT1G27390 215 / 3e-71 translocase outer membrane 20-2 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012532 [exp] 228 / 4e-70 AT3G01910 616 / 0.0 sulfite oxidase (.1.2.3) Lus10035211 [exp] 209 / 2e-68 AT3G27080 210 / 1e-68 translocase of outer membrane 20 kDa subunit 3 (.1) Lus10032045 [exp] 208 / 3e-68 AT3G27080 211 / 2e-69 translocase of outer membrane 20 kDa subunit 3 (.1) Lus10011363 [exp] 174 / 4e-55 AT3G27080 180 / 1e-57 translocase of outer membrane 20 kDa subunit 3 (.1) Lus10006419 [exp] 174 / 5e-55 AT3G27080 180 / 1e-57 translocase of outer membrane 20 kDa subunit 3 (.1) Lus10041558 [exp] 78 / 5e-18 AT3G27080 83 / 5e-20 translocase of outer membrane 20 kDa subunit 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF06552 [poplar] [flax] TOM20_plant Plant specific mitochondrial import receptor subunit TOM20
Representative CDS sequence Show only first row Show all	>Potri.003G173400.2 pacid=42786292 polypeptide=Potri.003G173400.2.p locus=Potri.003G173400 ID=Potri.003G173400.2.v4.1 annot-version=v4.1 ATGGAGTTCTCTCAAGATGACTTTGATCGTCTATTAAGGTTCGAGCACACTCGAAAATCCGCCGAAGCTACCTACGCTAAAGACCCTCTTGATGCCGACA ACTTGACTAAGTGGGGCGAGGCATTGCTCGAACTATCACAATTTCAAACCGTGGCAGAGGCAAAGAAGATGATAAATGAGGCTATTTCGAAGTTGGAAGA GGCAATGATGTTAAATCCAACAGCCAATGCCATGTGGTCAATAGGAAATGCCAACACTTCTTATGCATTTCTGACTCCCGATCTTTCTGAGGCAAAAAAT TATTTTGACAAGGCAGCTGATTACTTCCAACAAGCGGTTGATGAGGACTCGACCAACGAGCTTTACCACAAGTCTTTGGAAGTTTGTGCTAAGGCTCCAG AATTGCATATGGAGATCCATAAGCATTCAAGCAGTCAACAGACCATGGGTGGTGAATCTTCTCCTTCTTCAAATGCAAAGGGCTCCAAGAAGAAGGCAAA CAGTGATCTGAAGTATGATATATTTGGATGGATTATCCTTGCAGTTGGAATCGTTGCATGGATGGGGATTGCAAAATCCCATGTTCCTCCTCCTCCAATA TAA
AA sequence Show only first row Show all	>Potri.003G173400.2 pacid=42786292 polypeptide=Potri.003G173400.2.p locus=Potri.003G173400 ID=Potri.003G173400.2.v4.1 annot-version=v4.1 MEFSQDDFDRLLRFEHTRKSAEATYAKDPLDADNLTKWGEALLELSQFQTVAEAKKMINEAISKLEEAMMLNPTANAMWSIGNANTSYAFLTPDLSEAKN YFDKAADYFQQAVDEDSTNELYHKSLEVCAKAPELHMEIHKHSSSQQTMGGESSPSSNAKGSKKKANSDLKYDIFGWIILAVGIVAWMGIAKSHVPPPPI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G27080		TOM20-3	translocase of outer membrane ...		Potri.003G173400 [exp]	0	1	Pt-TOM20.2
AT3G12390			Nascent polypeptide-associated...		Potri.001G034400 [exp]	2.44	0.9624
AT5G25757			RNA polymerase I-associated fa...		Potri.018G038500 [exp]	4.24	0.9405
AT5G60390			GTP binding Elongation factor ...		Potri.008G042700 [exp]	5.47	0.9540	Pt-ADR12.2
AT3G62870			Ribosomal protein L7Ae/L30e/S1...		Potri.017G101000 [exp]	5.74	0.9569	Pt-RPL7.7
AT2G34480			Ribosomal protein L18ae/LX fam...		Potri.002G057600 [exp]	5.83	0.9574	RPL18.7
AT3G52590		HAP4, ERD16, UB...	HAPLESS 4, EARLY-RESPONSIVE TO...		Potri.016G077000 [exp]	7.93	0.9493	UBQ1.1
AT2G20420			ATP citrate lyase (ACL) family...		Potri.002G259600 [exp]	9.74	0.9396
AT1G43170		RPL3A, ARP1, EM...	embryo defective 2207, ribosom...		Potri.005G194500 [exp]	10.58	0.9547	ARP1.1
AT5G28060			Ribosomal protein S24e family ...		Potri.008G152500 [exp]	11.74	0.9534
AT1G62440		LRX2	leucine-rich repeat/extensin 2...		Potri.006G081200 [exp]	14.14	0.9229

Compare expression of checked genes

Potri.003G173400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.