Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G74110 492 / 2e-170 CYP78A10 "cytochrome P450, family 78, subfamily A, polypeptide 10", cytochrome P450, family 78, subfamily A, polypeptide 10 (.1) AT1G13710 470 / 4e-162 CYP78A5, KLUH KLUH, "cytochrome P450, family 78, subfamily A, polypeptide 5", cytochrome P450, family 78, subfamily A, polypeptide 5 (.1) AT2G46660 460 / 5e-158 CYP78A6 "cytochrome P450, family 78, subfamily A, polypeptide 6", cytochrome P450, family 78, subfamily A, polypeptide 6 (.1) AT1G01190 456 / 2e-156 CYP78A8 "cytochrome P450, family 78, subfamily A, polypeptide 8", cytochrome P450, family 78, subfamily A, polypeptide 8 (.1) AT3G61880 456 / 4e-156 CYP78A9 cytochrome p450 78a9 (.1.2) AT5G09970 429 / 1e-145 CYP78A7 "cytochrome P450, family 78, subfamily A, polypeptide 7", cytochrome P450, family 78, subfamily A, polypeptide 7 (.1) AT5G07990 266 / 9e-83 CYP75B1, D501, TT7 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) AT2G45550 234 / 2e-70 CYP76C4 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) AT2G40890 227 / 5e-68 REF8, CYP98A3, C3H1 cytochrome P450, family 98, subfamily A, polypeptide 3 (.1) AT4G31940 227 / 7e-68 CYP82C4 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G054800 [exp] 865 / 0 AT1G74110 502 / 8e-174 "cytochrome P450, family 78, subfamily A, polypeptide 10", cytochrome P450, family 78, subfamily A, polypeptide 10 (.1) Potri.014G102700 [exp] 465 / 7e-160 AT2G46660 723 / 0.0 "cytochrome P450, family 78, subfamily A, polypeptide 6", cytochrome P450, family 78, subfamily A, polypeptide 6 (.1) Potri.005G084500 [exp] 464 / 1e-159 AT5G09970 759 / 0.0 "cytochrome P450, family 78, subfamily A, polypeptide 7", cytochrome P450, family 78, subfamily A, polypeptide 7 (.1) Potri.005G200400 [exp] 464 / 3e-159 AT5G09970 681 / 0.0 "cytochrome P450, family 78, subfamily A, polypeptide 7", cytochrome P450, family 78, subfamily A, polypeptide 7 (.1) Potri.002G060900 [exp] 461 / 2e-158 AT5G09970 703 / 0.0 "cytochrome P450, family 78, subfamily A, polypeptide 7", cytochrome P450, family 78, subfamily A, polypeptide 7 (.1) Potri.007G081200 [exp] 456 / 2e-156 AT5G09970 743 / 0.0 "cytochrome P450, family 78, subfamily A, polypeptide 7", cytochrome P450, family 78, subfamily A, polypeptide 7 (.1) Potri.003G146800 [exp] 453 / 2e-155 AT2G46660 659 / 0.0 "cytochrome P450, family 78, subfamily A, polypeptide 6", cytochrome P450, family 78, subfamily A, polypeptide 6 (.1) Potri.001G083900 [exp] 449 / 9e-154 AT2G46660 692 / 0.0 "cytochrome P450, family 78, subfamily A, polypeptide 6", cytochrome P450, family 78, subfamily A, polypeptide 6 (.1) Potri.002G175200 [exp] 449 / 2e-153 AT2G46660 694 / 0.0 "cytochrome P450, family 78, subfamily A, polypeptide 6", cytochrome P450, family 78, subfamily A, polypeptide 6 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015788 [exp] 619 / 0 AT1G13710 471 / 1e-163 KLUH, "cytochrome P450, family 78, subfamily A, polypeptide 5", cytochrome P450, family 78, subfamily A, polypeptide 5 (.1) Lus10017334 [exp] 481 / 2e-166 AT3G61880 656 / 0.0 cytochrome p450 78a9 (.1.2) Lus10005995 [exp] 454 / 1e-155 AT2G46660 708 / 0.0 "cytochrome P450, family 78, subfamily A, polypeptide 6", cytochrome P450, family 78, subfamily A, polypeptide 6 (.1) Lus10030216 [exp] 443 / 4e-151 AT2G46660 697 / 0.0 "cytochrome P450, family 78, subfamily A, polypeptide 6", cytochrome P450, family 78, subfamily A, polypeptide 6 (.1) Lus10005780 [exp] 439 / 1e-149 AT5G09970 696 / 0.0 "cytochrome P450, family 78, subfamily A, polypeptide 7", cytochrome P450, family 78, subfamily A, polypeptide 7 (.1) Lus10036627 [exp] 436 / 5e-148 AT5G09970 735 / 0.0 "cytochrome P450, family 78, subfamily A, polypeptide 7", cytochrome P450, family 78, subfamily A, polypeptide 7 (.1) Lus10035844 [exp] 430 / 5e-146 AT5G09970 729 / 0.0 "cytochrome P450, family 78, subfamily A, polypeptide 7", cytochrome P450, family 78, subfamily A, polypeptide 7 (.1) Lus10001670 [exp] 413 / 1e-139 AT2G46660 588 / 0.0 "cytochrome P450, family 78, subfamily A, polypeptide 6", cytochrome P450, family 78, subfamily A, polypeptide 6 (.1) Lus10021158 [exp] 244 / 2e-74 AT5G07990 706 / 0.0 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) Lus10021620 [exp] 244 / 4e-74 AT5G07990 657 / 0.0 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [poplar] [flax] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Potri.003G173500.1 pacid=42787075 polypeptide=Potri.003G173500.1.p locus=Potri.003G173500 ID=Potri.003G173500.1.v4.1 annot-version=v4.1 ATGAAGTCCATACCAGCAAACCTTTCTTCCATACTATTTTGCTTAGCTGTCATCACCCACCAAACTCCATGGCCTGTTGCTCTCCTTTTATTCTCGTTAT CCTCTTTCTTTGCTTTCTCTCTAAACTATTGGTTAGTCCCTGGAGGTTTTGCATGGAGAAACCATCACGACAATCAAAACCCTTCAAGATTTCGTGGTCC AATTGGGTGGCCTATAGTGGGCACTTTACCCCAAATGGGTTCACTTGCTCATCGAAAATTAGCTAGCATGGCTGCCTCATTAGGGGCAACTAAGCTTATG GCATTCAGTTTAGGCTCAACTCGTGTGATAATTAGTAGCCATCCAGACACAGCCAGGGAAATCCTATGCGGGTGCTCTTTCGCTGACCGTCCTATTAAGG AATCAGCTCGTTTGTTAATGTTTGAGCGTGCCATTGGCTTTGCTCCTTCCGGAGACTATTGGCGACACTTGCGTAGAATTGCGGCAAATTACATGTTTTC CCCGAGGAAAATCTCTGCTCTAGAGCCACTTAGGCAACGTTTAGCTAATGAAATGGTGGCAGAAGTGAGAGAGGAGATGAAGGAGAGACGGGTTGTTGTG TTAAGAGACATATTGCAGAAAGGTTCATTAAGTAATGTATTAGAGAGTGTTTTTGGTAGTGATGTCTCTATAGAGAGGGAGGAGTTAGGGTTCATGGTTA AAGAAGGATTTGACTTGATTGCAGAATTTAATTTGGATGACTATTTTCCACTAAGGTTTTTGGACTTTCATGGAGTGAAGAGAAGGTGTTGTCAGTTGGC TGGCAAGGTTAATAGTGTTGTGGGTCAAATTGTGAAGGAAAGAAAAGGAGCTGGAGACTCAAGGAGTGGAAGTGACTTTCTTAGTGCTTTGCTATCCTTG CCTGAGGAAGACCAGTTGAATGAATCAGATATGGTGGCTCTTTTATGGGAGATGATATTCCGAGGAACAGACACAGTTGCTTTGCTTCTCGAGTGGATAA TGGCTCGGATGGTGGTGCACCCAGAAATCCAAGCAAAGGCCCAGGAGGAGCTTGACACGTGCATTGGCGGCCACAGGGAGGTGCAAGATTCGGATATCCC TAATCTCCCCTACCTCCGAGCAATAGTCAAAGAAGTCCTGAGATTGCACCCACCTGGCCCACTACTCTCGTGGGCCCGCCTAGCCATCCATGATGTGCAC GTGGACAAGACGTTCATCCCTGCCGGCACAACAGTGATGGTTAACATGTGGGCCATAACACATGACCCTTCCATTTGGAGGGATCCATGGTCCTTCAATC CTGACCGGTTCATTGAAGAGGATGTGCTGATTATGGGCTCAGATCTAAGGCTCGCACCATTTGGAGCAGGGCGCAGGGTGTGTCCAGGCAAGGCACTTGG GCTAGCCACGGTGCACCTATGGCTCGCACGGCTTTTACACGAGTACAGATGGTTACCCGCAAAACCCGTGGATCTTTCTGAGTGTTTAAGGCTCTCTCTC GAAATGAAAAGGCCACTGGAATGTCATGTGGTTCAACGACGGAGCAAAGTCACGCAATGA
AA sequence Show only first row Show all	>Potri.003G173500.1 pacid=42787075 polypeptide=Potri.003G173500.1.p locus=Potri.003G173500 ID=Potri.003G173500.1.v4.1 annot-version=v4.1 MKSIPANLSSILFCLAVITHQTPWPVALLLFSLSSFFAFSLNYWLVPGGFAWRNHHDNQNPSRFRGPIGWPIVGTLPQMGSLAHRKLASMAASLGATKLM AFSLGSTRVIISSHPDTAREILCGCSFADRPIKESARLLMFERAIGFAPSGDYWRHLRRIAANYMFSPRKISALEPLRQRLANEMVAEVREEMKERRVVV LRDILQKGSLSNVLESVFGSDVSIEREELGFMVKEGFDLIAEFNLDDYFPLRFLDFHGVKRRCCQLAGKVNSVVGQIVKERKGAGDSRSGSDFLSALLSL PEEDQLNESDMVALLWEMIFRGTDTVALLLEWIMARMVVHPEIQAKAQEELDTCIGGHREVQDSDIPNLPYLRAIVKEVLRLHPPGPLLSWARLAIHDVH VDKTFIPAGTTVMVNMWAITHDPSIWRDPWSFNPDRFIEEDVLIMGSDLRLAPFGAGRRVCPGKALGLATVHLWLARLLHEYRWLPAKPVDLSECLRLSL EMKRPLECHVVQRRSKVTQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G74110		CYP78A10	"cytochrome P450, family 78, s...		Potri.003G173500 [exp]	0	1
AT2G35930		PUB23	plant U-box 23 (.1)		Potri.001G216100 [exp]	1.73	0.9575
AT1G80830		ATNRAMP1, PMIT1...	natural resistance-associated ...		Potri.002G080500 [exp]	4.47	0.9567
AT1G06840			Leucine-rich repeat protein ki...		Potri.016G140101 [exp]	7.21	0.9415
AT3G18180			Glycosyltransferase family 61 ...		Potri.015G042200 [exp]	11.22	0.9462
AT1G65870			Disease resistance-responsive ...		Potri.016G060700 [exp]	12.04	0.9329
AT2G30210		LAC3	laccase 3 (.1)		Potri.013G152700 [exp]	13.26	0.9262
AT2G01170		BAT1	bidirectional amino acid trans...		Potri.002G078300 [exp]	13.41	0.9268
AT2G38510			MATE efflux family protein (.1...		Potri.016G134800 [exp]	15.87	0.9290
AT2G38300	GARP		myb-like HTH transcriptional r...		Potri.009G075100 [exp]	17.66	0.9304
AT5G20050			Protein kinase superfamily pro...		Potri.018G070800 [exp]	21.49	0.9239

Compare expression of checked genes

Potri.003G173500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.