Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G11860 388 / 2e-133 SSP5 SCP1-like small phosphatase 5 (.1.2.3.4) AT5G46410 192 / 1e-55 SSP4 SCP1-like small phosphatase 4 (.1.2) AT4G18140 191 / 3e-55 SSP4b SCP1-like small phosphatase 4b (.1.2.3) AT1G29770 97 / 3e-22 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) AT1G29780 94 / 7e-22 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) AT5G45700 92 / 1e-20 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) AT3G55960 65 / 3e-11 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) AT1G43600 57 / 5e-09 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) AT1G43610 56 / 1e-08 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) AT3G17550 55 / 5e-08 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G054700 [exp] 746 / 0 AT5G11860 380 / 2e-130 SCP1-like small phosphatase 5 (.1.2.3.4) Potri.011G078300 [exp] 226 / 2e-68 AT5G46410 419 / 1e-143 SCP1-like small phosphatase 4 (.1.2) Potri.001G353700 [exp] 226 / 1e-67 AT5G46410 409 / 2e-138 SCP1-like small phosphatase 4 (.1.2) Potri.004G062900 [exp] 96 / 1e-21 AT5G45700 194 / 1e-60 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Potri.011G072000 [exp] 87 / 5e-19 AT5G45700 230 / 5e-75 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Potri.016G116700 [exp] 70 / 4e-13 AT3G55960 248 / 1e-81 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Potri.006G100800 [exp] 69 / 8e-13 AT3G55960 304 / 6e-103 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Potri.008G068800 [exp] 66 / 1e-11 AT3G55960 342 / 3e-118 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Potri.010G188500 [exp] 65 / 2e-11 AT3G55960 406 / 8e-144 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015787 [exp] 518 / 0 AT5G11860 410 / 8e-143 SCP1-like small phosphatase 5 (.1.2.3.4) Lus10037019 [exp] 429 / 2e-138 AT1G67370 621 / 0.0 ASYNAPTIC 1, DNA-binding HORMA family protein (.1) Lus10037018 [exp] 231 / 1e-72 AT5G11860 108 / 1e-27 SCP1-like small phosphatase 5 (.1.2.3.4) Lus10004596 [exp] 219 / 1e-65 AT5G46410 398 / 3e-135 SCP1-like small phosphatase 4 (.1.2) Lus10025376 [exp] 211 / 1e-62 AT5G46410 343 / 2e-114 SCP1-like small phosphatase 4 (.1.2) Lus10004551 [exp] 166 / 8e-46 AT5G46410 286 / 8e-92 SCP1-like small phosphatase 4 (.1.2) Lus10007321 [exp] 93 / 8e-21 AT5G45700 206 / 3e-65 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Lus10029273 [exp] 92 / 2e-20 AT5G45700 211 / 4e-67 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Lus10028284 [exp] 64 / 4e-11 AT3G55960 383 / 2e-134 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Lus10009890 [exp] 61 / 6e-10 AT3G55960 445 / 9e-159 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0137 [poplar] [flax] HAD PF03031 [poplar] [flax] NIF NLI interacting factor-like phosphatase
Representative CDS sequence Show only first row Show all	>Potri.003G173700.1 pacid=42786958 polypeptide=Potri.003G173700.1.p locus=Potri.003G173700 ID=Potri.003G173700.1.v4.1 annot-version=v4.1 ATGCAAACTAAGAAAAGAATTTCTGGAAGAAATGCTCCAAGAGAGCCTGCAAGTCCCAGGATTTCGAGAGCTCAGAAGAAATTGTTGGAAAATTTGCAAG TTGCTGAAAAGAAAGTTTCAGAGTTAATTACATCTTCAGCCAGAAAGCAGAAATGTGGCTCTCTTCCAAAGAAAAATGAGGAGCCTATATCGGCAACAAA TTCGAATTCTAGATACAACAATGTGCATCAAAAGGCTTCCAATGCTTCTACCCAGTGTGATGTGGTGGATCCTAAGGGTTGTGATGAAGGATCTGCTCAA TGTGTGTTGCAAACTATATTTTCTCCTTCTTTTCACATATCTAAAATTGCTGGAGGAGAAATTTCTGGTGGAGTCGACTTGATAAAACTGTTTCGGACTG GAGACTCTCGGGTTGATATGCTGGATGGTCATGTTACACAAGAAACTTTTAAATCCTCTTTTGGAGAACACAATGAGAGCACATTAACTTCACTCAACAC ATGTCATAGTGACATGGAATTGGAGAAAAATATATCAGCCAAAAACTCATATGGGGATCGCTGTGGTGATCAGGTGCTCTCTACTGATGTAACTACTGTG AATTCTTATAGTATTGCAGCTTCAAATGGAGTTGGTCTTGCTTCTGATGTTTCAACTATATATCTTGCATTGAAGAACTCAAAACTGGAATGTGTTGATG AGCACGGTCAAGATTCTATGTCAACTGATGTTTGCTTGGAGGAGGATGATTATGAGGATTTTGATGACTTTGACCCTTATCTATTTATAAAGAACCTGCC AGAGCTGTCATCAGTAGTCCCCACTTTTCGGCCTATGTTGCTACCTAAACAGACTCGGAGTTGTCCTCCTACAACCCTTGTTTTGGACCTGGATGAGACT CTGGTGCACTCTGCCCTTGAACCTTGTAATGATGCGGACTTCACATTTCCTGTCAACTTCAACCTCCAGGAGCACACAGTCTTTGTCCGGTGCCGTCCTT ACCTCAGAGATTTCATGGAGAGAGTTTCTAGTCTTTTTGAGATCATAATATTTACAGCTAGTCAAAGTATCTACGCAGAACAGCTTCTAAATGTGCTTGA TCCAAAGAGGAGGATATTTCGACATCGTGTTTTCCGTGAATCCTGTGTTTTTGTCGAGGGTAACTACCTCAAGGATTTGTCAGTTCTTGGTCGTGATTTG GCCCGTGTTATTATAATTGACAACTCTCCCCAGGCATTTGGCTTCCAAGTAGACAATGGTATACCAATTGAGAGCTGGTTTGAAGATCGTTCAGATAAAG AATTGCTCTCGCTACTTCCATTTTTGGAGAGCTTGGTTGGGGTTGAAGATGTGAGGCCTCTAATTGCAAAGAAATACAATCTTCGGCAGAAAATTGCTGC AGCTGTTTACCCTCCGTTGAATTCAAATAGAGGAGATCCTTTTGAAAGGTAG
AA sequence Show only first row Show all	>Potri.003G173700.1 pacid=42786958 polypeptide=Potri.003G173700.1.p locus=Potri.003G173700 ID=Potri.003G173700.1.v4.1 annot-version=v4.1 MQTKKRISGRNAPREPASPRISRAQKKLLENLQVAEKKVSELITSSARKQKCGSLPKKNEEPISATNSNSRYNNVHQKASNASTQCDVVDPKGCDEGSAQ CVLQTIFSPSFHISKIAGGEISGGVDLIKLFRTGDSRVDMLDGHVTQETFKSSFGEHNESTLTSLNTCHSDMELEKNISAKNSYGDRCGDQVLSTDVTTV NSYSIAASNGVGLASDVSTIYLALKNSKLECVDEHGQDSMSTDVCLEEDDYEDFDDFDPYLFIKNLPELSSVVPTFRPMLLPKQTRSCPPTTLVLDLDET LVHSALEPCNDADFTFPVNFNLQEHTVFVRCRPYLRDFMERVSSLFEIIIFTASQSIYAEQLLNVLDPKRRIFRHRVFRESCVFVEGNYLKDLSVLGRDL ARVIIIDNSPQAFGFQVDNGIPIESWFEDRSDKELLSLLPFLESLVGVEDVRPLIAKKYNLRQKIAAAVYPPLNSNRGDPFER

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G11860		SSP5	SCP1-like small phosphatase 5 ...		Potri.003G173700 [exp]	0	1
AT2G17410	ARID		ARID/BRIGHT DNA-binding domain...		Potri.001G456500 [exp]	1.00	0.8708
AT1G19980			cytomatrix protein-related (.1...		Potri.002G022200 [exp]	2.00	0.7886
AT5G51140			Pseudouridine synthase family ...		Potri.015G101300 [exp]	3.46	0.8351
AT4G37210			Tetratricopeptide repeat (TPR)...		Potri.007G034200 [exp]	3.46	0.7479
AT1G55150			DEA(D/H)-box RNA helicase fami...		Potri.003G038300 [exp]	5.74	0.7929
AT5G47750		PK5, D6PKL2	D6 protein kinase like 2 (.1)		Potri.006G003800 [exp]	6.48	0.7708	Pt-CCSPK1.2
AT5G04130		GYRB2	DNA GYRASE B2 (.1.2)		Potri.006G039400 [exp]	10.09	0.7736
AT3G13330		PA200	proteasome activating protein ...		Potri.001G470600 [exp]	10.39	0.7321
AT2G37340		RSZ33, ATRSZ33,...	arginine/serine-rich zinc knuc...		Potri.016G081700 [exp]	11.61	0.7518
AT1G09290			unknown protein		Potri.010G099500 [exp]	12.96	0.7160

Compare expression of checked genes

Potri.003G173700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.