Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G23990 1016 / 0 HSP60-3B, HSP60 HEAT SHOCK PROTEIN 60-3B, heat shock protein 60 (.1) AT2G33210 992 / 0 HSP60-2 heat shock protein 60-2 (.1.2) AT3G13860 804 / 0 HSP60-3A heat shock protein 60-3A (.1) AT5G56500 513 / 4e-177 Cpn60beta3 chaperonin-60beta3, TCP-1/cpn60 chaperonin family protein (.1.2) AT3G13470 498 / 7e-171 Cpn60beta2 chaperonin-60beta2, TCP-1/cpn60 chaperonin family protein (.1) AT1G55490 493 / 5e-169 Cpn60beta1, LEN1, CPN60B LESION INITIATION 1, chaperonin-60beta1, chaperonin 60 beta (.1.2) AT2G28000 468 / 3e-159 Cpn60alpha1, SLP, CH-CPN60A, CPN60A SCHLEPPERLESS, chaperonin-60alpha1, CHLOROPLAST CHAPERONIN 60ALPHA, chaperonin-60alpha (.1) AT1G26230 464 / 2e-157 Cpn60beta4 chaperonin-60beta4, TCP-1/cpn60 chaperonin family protein (.1.2) AT5G18820 380 / 2e-125 Cpn60alpha2, EMB3007 embryo defective 3007, chaperonin-60alpha2, TCP-1/cpn60 chaperonin family protein (.1) AT5G20890 73 / 2e-13 TCP-1/cpn60 chaperonin family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G054400 [exp] 1106 / 0 AT3G23990 1018 / 0.0 HEAT SHOCK PROTEIN 60-3B, heat shock protein 60 (.1) Potri.002G252900 [exp] 1006 / 0 AT3G23990 995 / 0.0 HEAT SHOCK PROTEIN 60-3B, heat shock protein 60 (.1) Potri.003G039475 [exp] 778 / 0 AT3G13860 810 / 0.0 heat shock protein 60-3A (.1) Potri.001G002500 [exp] 501 / 3e-172 AT3G13470 1030 / 0.0 chaperonin-60beta2, TCP-1/cpn60 chaperonin family protein (.1) Potri.003G222400 [exp] 501 / 5e-172 AT3G13470 1033 / 0.0 chaperonin-60beta2, TCP-1/cpn60 chaperonin family protein (.1) Potri.009G009300 [exp] 496 / 2e-170 AT2G28000 919 / 0.0 SCHLEPPERLESS, chaperonin-60alpha1, CHLOROPLAST CHAPERONIN 60ALPHA, chaperonin-60alpha (.1) Potri.004G213400 [exp] 493 / 3e-169 AT2G28000 964 / 0.0 SCHLEPPERLESS, chaperonin-60alpha1, CHLOROPLAST CHAPERONIN 60ALPHA, chaperonin-60alpha (.1) Potri.010G135100 [exp] 449 / 4e-152 AT1G26230 813 / 0.0 chaperonin-60beta4, TCP-1/cpn60 chaperonin family protein (.1.2) Potri.015G122800 [exp] 412 / 8e-138 AT5G18820 821 / 0.0 embryo defective 3007, chaperonin-60alpha2, TCP-1/cpn60 chaperonin family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011770 [exp] 1028 / 0 AT3G23990 994 / 0.0 HEAT SHOCK PROTEIN 60-3B, heat shock protein 60 (.1) Lus10011898 [exp] 1010 / 0 AT3G23990 987 / 0.0 HEAT SHOCK PROTEIN 60-3B, heat shock protein 60 (.1) Lus10022832 [exp] 1000 / 0 AT3G23990 980 / 0.0 HEAT SHOCK PROTEIN 60-3B, heat shock protein 60 (.1) Lus10011902 [exp] 983 / 0 AT3G23990 964 / 0.0 HEAT SHOCK PROTEIN 60-3B, heat shock protein 60 (.1) Lus10003791 [exp] 772 / 0 AT3G13860 867 / 0.0 heat shock protein 60-3A (.1) Lus10013404 [exp] 496 / 5e-170 AT3G13470 1037 / 0.0 chaperonin-60beta2, TCP-1/cpn60 chaperonin family protein (.1) Lus10010321 [exp] 495 / 3e-169 AT3G13470 1041 / 0.0 chaperonin-60beta2, TCP-1/cpn60 chaperonin family protein (.1) Lus10037386 [exp] 457 / 3e-155 AT2G28000 960 / 0.0 SCHLEPPERLESS, chaperonin-60alpha1, CHLOROPLAST CHAPERONIN 60ALPHA, chaperonin-60alpha (.1) Lus10030917 [exp] 437 / 8e-147 AT1G26230 863 / 0.0 chaperonin-60beta4, TCP-1/cpn60 chaperonin family protein (.1.2) Lus10041329 [exp] 409 / 7e-137 AT2G28000 845 / 0.0 SCHLEPPERLESS, chaperonin-60alpha1, CHLOROPLAST CHAPERONIN 60ALPHA, chaperonin-60alpha (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00118 [poplar] [flax] Cpn60_TCP1 TCP-1/cpn60 chaperonin family
Representative CDS sequence Show only first row Show all	>Potri.003G173900.1 pacid=42787327 polypeptide=Potri.003G173900.1.p locus=Potri.003G173900 ID=Potri.003G173900.1.v4.1 annot-version=v4.1 ATGCACCGCTTCACTTCTAGCCTCGCTTCCAAGGCTCGGATTGCTAGGAGCACCACCAAACAAATTGGAAGTAGGTTGAGTTGGAGCAGAAACTATGCTG CCAAAGACATAAGATTCGGTGTGGAGGCTCGTGCTGTGATGCTTAAGGGTGTTGAAGAGCTAGCTGATGCTGTCAAAGTCACCATGGGCCCTAAGGGTCG CAATGTGGTTATTGAACAAAGCTTTGGTGCCCCCAAAGTGACTAAGGATGGTGTGACTGTTGCAAAGAGCATTGAGTTCAAGGATAAAGTCAAGAATGTT GGTGCTAGCCTCGTGAAGCAGGTTGCAAATGCCACAAATGATGCTGCAGGCGATGGGACCACTTGTGCTACGGTCCTCACTCGAGCAATATTTGCTGAAG GGTGCAAGTCAGTTGCAGCAGGAATGAATGCAATGGACCTAAGACGTGGTATCAGCATGGCTGTGGAATCAGTTGTTACCAATTTGAAAAGCAGAACAAG AATGATCAGCACATCCGAAGAAATTGCACAAGTTGGTACAATATCAGCAAATGGGGAAAGAGAAATTGGTGAGTTGATTGCGAAGGCCATGGAGAAGGTT GGGAAAGAGGGAGTTATAACAATTCAAGATGGGAAAACATTATCTAATGAGTTGGAAGTTGTTGAGGGATTGAAGCTTGACAGGGGCTATATATCCCCTT ATTTCATCACGGACCAGAAAACCCAAAAATGTGAATTGGATGACCCTCTCATTCTGATCCATGACAAGAAAGTCTCAAATTTGCATGCTGTGGTGAAAGT ACTAGAGTTGGCTTTAAAGAGACAAAGGCCCTTGCTGATTGTTGCTGAAGATGTGGAGAGTGAGGCACTGGCAACACTTATTTTAAATAAGCTTCGTGCT GGAATCAAGGTCTGTGCCATTAAGGCCCCTGGTTTTGGAGAGAACAGGAAGGCTACATTGCAGGATCTTGCTGTCCTCACAGGAGCCGAAGTTATAACCG AAGAGCTTGGCCTCAATCTTGAAAAGGTGGATTTGGATATGCTTGGCAGTTGCAAAAAGGTTACAGTATCAAAGGATGACACTGTTATTCTTGATGGTGC TGGTGACAAGAAGTCCATTGAAGAAAGATGTGAACAGATCCGATCTGCAGTAGAGTCAAGTACTTCTGACTATGACAAAGAGAAGTTGCATGAAAGACTG GCAAAGCTTTCTGGTGGTGTTGCTGTGCTGAAGATTGGAGGAGCTAGTGAAGCTGAAGTTGGTGAGAAGAAAGATAGAGTTACAGATGCCCTAAATGCCA CAAAGGCTGCTGTGGAAGAGGGTATTGTGCCAGGAGGTGGTGCTGCACTTCTTTATGCATCAAAAGAGTTGGATAAGCTGCAAACTGCCAACTTTGACCA GAAGATCGGTGTTCAAATTATTCAGAACGCCCTGAAGACCCCTGTGCATACAATTGCTACTAATGCGGGAGTCGAGGGAGCTGTTGTTGTTGGTAAGCTA TTGGAGCAGGACAACCCTGATCTAGGGTACGACGCTGCCAAAGATGAATATGTTGATATGGTGAAAGCTGGCATTATTGACCCGCTGAAAGTAATTAGAA CTGCTTTGGTCGATGCTGCCAGTGTCTCCTCGTTGATGACAACAACTGAGGCTGTTATAACTGAGCTTCCAAAGGATGAAAATGATGCTCCGGCAATGGG TCCAGGCATGGGCATGGATTACTGA
AA sequence Show only first row Show all	>Potri.003G173900.1 pacid=42787327 polypeptide=Potri.003G173900.1.p locus=Potri.003G173900 ID=Potri.003G173900.1.v4.1 annot-version=v4.1 MHRFTSSLASKARIARSTTKQIGSRLSWSRNYAAKDIRFGVEARAVMLKGVEELADAVKVTMGPKGRNVVIEQSFGAPKVTKDGVTVAKSIEFKDKVKNV GASLVKQVANATNDAAGDGTTCATVLTRAIFAEGCKSVAAGMNAMDLRRGISMAVESVVTNLKSRTRMISTSEEIAQVGTISANGEREIGELIAKAMEKV GKEGVITIQDGKTLSNELEVVEGLKLDRGYISPYFITDQKTQKCELDDPLILIHDKKVSNLHAVVKVLELALKRQRPLLIVAEDVESEALATLILNKLRA GIKVCAIKAPGFGENRKATLQDLAVLTGAEVITEELGLNLEKVDLDMLGSCKKVTVSKDDTVILDGAGDKKSIEERCEQIRSAVESSTSDYDKEKLHERL AKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKAAVEEGIVPGGGAALLYASKELDKLQTANFDQKIGVQIIQNALKTPVHTIATNAGVEGAVVVGKL LEQDNPDLGYDAAKDEYVDMVKAGIIDPLKVIRTALVDAASVSSLMTTTEAVITELPKDENDAPAMGPGMGMDY

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G23990		HSP60-3B, HSP60	HEAT SHOCK PROTEIN 60-3B, heat...		Potri.003G173900 [exp]	0	1
AT2G19385			zinc ion binding (.1)		Potri.006G146200 [exp]	1.00	0.8938
AT4G21150		HAP6	HAPLESS 6, ribophorin II (RPN2...		Potri.005G226100 [exp]	1.41	0.8631
					Potri.001G400401 [exp]	3.46	0.8428
AT5G56000		Hsp81.4, AtHsp9...	HEAT SHOCK PROTEIN 90.4, HEAT ...		Potri.001G466000 [exp]	4.89	0.8249
AT4G10040		CYTC-2	cytochrome c-2 (.1)		Potri.013G101601 [exp]	6.48	0.8233
AT3G07140			GPI transamidase component Gpi...		Potri.014G190600 [exp]	6.48	0.7635
AT5G03160		ATP58IPK	homolog of mamallian P58IPK (....		Potri.016G088600 [exp]	10.58	0.8197
AT4G24190		AtHsp90-7, HSP9...	SHEPHERD, HEAT SHOCK PROTEIN 9...		Potri.005G241100 [exp]	11.83	0.7911
AT4G16660			heat shock protein 70 (Hsp 70)...		Potri.006G022100 [exp]	12.96	0.7841
AT2G47580		U1A	spliceosomal protein U1A (.1)		Potri.002G203600 [exp]	13.96	0.7728

Compare expression of checked genes

Potri.003G173900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.