Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G24010 281 / 3e-96 ATING1 ARABIDOPSIS THALIANA INHIBITOR OF GROWTH 1, RING/FYVE/PHD zinc finger superfamily protein (.1) AT1G54390 90 / 3e-21 ING2 INHIBITOR OF GROWTH 2, PHD finger protein-related (.1.2.3.4.5.6)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G058800 [exp] 91 / 1e-21 AT1G54390 372 / 4e-131 INHIBITOR OF GROWTH 2, PHD finger protein-related (.1.2.3.4.5.6) Potri.019G033800 [exp] 90 / 4e-21 AT1G54390 374 / 9e-132 INHIBITOR OF GROWTH 2, PHD finger protein-related (.1.2.3.4.5.6)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043140 [exp] 280 / 1e-95 AT3G24010 273 / 5e-93 ARABIDOPSIS THALIANA INHIBITOR OF GROWTH 1, RING/FYVE/PHD zinc finger superfamily protein (.1) Lus10032609 [exp] 239 / 3e-74 AT1G04610 248 / 7e-75 YUCCA 3 (.1) Lus10033830 [exp] 91 / 2e-21 AT1G54390 374 / 9e-132 INHIBITOR OF GROWTH 2, PHD finger protein-related (.1.2.3.4.5.6) Lus10018974 [exp] 59 / 4e-10 AT1G54390 328 / 2e-112 INHIBITOR OF GROWTH 2, PHD finger protein-related (.1.2.3.4.5.6)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF12998 [poplar] [flax] ING Inhibitor of growth proteins N-terminal histone-binding
Representative CDS sequence Show only first row Show all	>Potri.003G174000.1 pacid=42786868 polypeptide=Potri.003G174000.1.p locus=Potri.003G174000 ID=Potri.003G174000.1.v4.1 annot-version=v4.1 ATGTCCTCCTTCGTCGATGAATTTCAAGCCAATCTGGAAGCGCTTCCCAATATTCTGCAAAAGAAGTACTCATTGTTGCGTGATCTGGACAAAAGTTTGC AGGAGATTCAACGCCAAAATGAACAACGATGCGAACAAGAAATAGAGGACATTAAGCGAGGAGTTAAGGCTGGAAACATTACACCAAATACTTCACTTAT CAGATTCTCAGATGAGGCACTTGATGAGCAAAAGCATAGCATCAGGATTGCGGATGAAAAGATGGCATTGGCTGTCCAAGCATATGATTTGGTAGATGCA CACATTCAACAACTTGATCAATTTCTGAAGTTATGTGACGAAGACAATCGGCGTGAAAGAGATACTGCTGCTGCTGCTCCGGCATTGCTTGCTTCAAGTC TTGATGGCGGTACAAAGTCTGGAAGGGGTAGTGAGAGTGGTAGAGGAGGGCGTAAAAAAACACGCCTTGTTGCTGCAGAAGAAGCAACAGAGACAGAGGT GGCAGTGGCTACAACATTTGCAAATACTACTGGTATGCAACTAGATTTGCCAGTGGATCCGAATGAACCGACTTACTGTTTCTGCAATCAAGTTAGCTAT GGGGACATGATTGCATGCGACAACCCCGATTGCAAGATAGAATGGTTCCATTTTGGTTGTGTTGGGTTGAAAGAAAAAGTAAAAGGAAAATGGTATTGCT CTGATTGTGCCCCTTTGAAAAATCGTCGCAGAGGTAGATAA
AA sequence Show only first row Show all	>Potri.003G174000.1 pacid=42786868 polypeptide=Potri.003G174000.1.p locus=Potri.003G174000 ID=Potri.003G174000.1.v4.1 annot-version=v4.1 MSSFVDEFQANLEALPNILQKKYSLLRDLDKSLQEIQRQNEQRCEQEIEDIKRGVKAGNITPNTSLIRFSDEALDEQKHSIRIADEKMALAVQAYDLVDA HIQQLDQFLKLCDEDNRRERDTAAAAPALLASSLDGGTKSGRGSESGRGGRKKTRLVAAEEATETEVAVATTFANTTGMQLDLPVDPNEPTYCFCNQVSY GDMIACDNPDCKIEWFHFGCVGLKEKVKGKWYCSDCAPLKNRRRGR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G24010		ATING1	ARABIDOPSIS THALIANA INHIBITOR...		Potri.003G174000 [exp]	0	1
AT2G40110			Yippee family putative zinc-bi...		Potri.010G190000 [exp]	1.41	0.8758
AT5G66050			Wound-responsive family protei...		Potri.005G105900 [exp]	2.00	0.8474
AT5G23670		ATLCB2, LCB2	long chain base2 (.1.2)		Potri.012G104500 [exp]	2.23	0.8132	LJLCB2.2
AT2G28370			Uncharacterised protein family...		Potri.009G014600 [exp]	3.46	0.8610
AT4G00170			Plant VAMP (vesicle-associated...		Potri.002G144800 [exp]	5.19	0.7850
AT1G64355			unknown protein		Potri.001G093001 [exp]	6.16	0.7546
AT2G02760		ATUBC2	ubiquitin-conjugating enzyme 2...		Potri.019G039200 [exp]	6.92	0.8100	Pt-UBC1.2,HUPB903
AT1G32410			Vacuolar protein sorting 55 (V...		Potri.003G087500 [exp]	7.93	0.8004
AT1G51200			A20/AN1-like zinc finger famil...		Potri.006G056500 [exp]	8.48	0.8521
AT5G63220			unknown protein		Potri.010G217400 [exp]	10.24	0.6821

Compare expression of checked genes

Potri.003G174000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.