Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G33205 553 / 0 Serinc-domain containing serine and sphingolipid biosynthesis protein (.1) AT3G24460 378 / 7e-129 Serinc-domain containing serine and sphingolipid biosynthesis protein (.1) AT4G13345 374 / 8e-128 MEE55 maternal effect embryo arrest 55, Serinc-domain containing serine and sphingolipid biosynthesis protein (.1.2) AT3G06170 167 / 2e-47 Serinc-domain containing serine and sphingolipid biosynthesis protein (.1) AT1G16180 142 / 4e-38 Serinc-domain containing serine and sphingolipid biosynthesis protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G076000 [exp] 385 / 8e-132 AT3G24460 622 / 0.0 Serinc-domain containing serine and sphingolipid biosynthesis protein (.1) Potri.008G201900 [exp] 175 / 2e-50 AT3G06170 605 / 0.0 Serinc-domain containing serine and sphingolipid biosynthesis protein (.1) Potri.003G186500 [exp] 142 / 6e-38 AT1G16180 587 / 0.0 Serinc-domain containing serine and sphingolipid biosynthesis protein (.1.2) Potri.001G038100 [exp] 137 / 3e-36 AT1G16180 584 / 0.0 Serinc-domain containing serine and sphingolipid biosynthesis protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011768 [exp] 540 / 0 AT2G33205 457 / 2e-160 Serinc-domain containing serine and sphingolipid biosynthesis protein (.1) Lus10023690 [exp] 506 / 5e-179 AT2G33205 438 / 3e-152 Serinc-domain containing serine and sphingolipid biosynthesis protein (.1) Lus10033091 [exp] 338 / 2e-113 AT3G24460 562 / 0.0 Serinc-domain containing serine and sphingolipid biosynthesis protein (.1) Lus10017728 [exp] 331 / 6e-110 AT3G24460 575 / 0.0 Serinc-domain containing serine and sphingolipid biosynthesis protein (.1) Lus10034023 [exp] 170 / 3e-48 AT3G06170 648 / 0.0 Serinc-domain containing serine and sphingolipid biosynthesis protein (.1) Lus10004430 [exp] 169 / 1e-47 AT3G06170 625 / 0.0 Serinc-domain containing serine and sphingolipid biosynthesis protein (.1) Lus10008709 [exp] 136 / 1e-35 AT1G16180 670 / 0.0 Serinc-domain containing serine and sphingolipid biosynthesis protein (.1.2) Lus10026111 [exp] 135 / 3e-35 AT1G16180 667 / 0.0 Serinc-domain containing serine and sphingolipid biosynthesis protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03348 [poplar] [flax] Serinc Serine incorporator (Serinc)
Representative CDS sequence Show only first row Show all	>Potri.003G174200.2 pacid=42786845 polypeptide=Potri.003G174200.2.p locus=Potri.003G174200 ID=Potri.003G174200.2.v4.1 annot-version=v4.1 ATGGACCAGGATGCTAGACCAGCTGAAGCTGGGGCAGTGGATATAAGACCAAGCAATTCCGGGGTTCCACAGGGGGAAGTGAATAGTCGATTAGAGCAAA AGAGGATTGATTATTCAAGAGAAAAGAAAAAGACCCTGCAGGCTCGTTATATATACGGCATCATCTTCTTGATCATAAATCTTAAAGCTTGGTTTTTTCG CGATTACGGGCAAAGGGTTCTATCTCATTTCTATAATATAAAAGCTTGTGGAATTGACGGACAAGATTGCTGTCATACATTGGGCGTTCTTCGTGTGAGT TTAGGATGCTTCATATTTTTCTCTGTTATGTTTTTCACCACTATAAAAACAAGAAAATTATATGAAGCTCGCAGTAGCTGGCATTCAGGATGGTGGGCAG TGAAGCTTGTTCTATTGATTGTATCAATGGCAGTACCATTCTTCCTCCATTCAAAATACATTCAAATATATGGAGAATTTGCTAGAGTTGGTGCTGGAAT TTTTCTTGTTCTTCAACTTGTAAGCGTAATTGAGTTCATCACCTGGTGGAATAATTACTGGATGCCTGATGAACAAAAGAAGCAAAGTTGCTCCCTTGGA TTGTTCATGTCAACAATTTTCTATCTTGCTTCTGTTTGTGGAATTGTGGTGATGTACGCTTTCTATGGACGGAAAGTTGAATGTTCGCTAAACATATTCT TCATTACATGGACTGCCATTCTTCTTATAGTGATGATGGCTATGTCCTTACACTCAAAGGTCAATAGAGGCCTTTTGTCTTCTGGGATTATGGCTTCATA CCTTGTCTTCCTCTGTTGGTCTGCCATAAGAAGTGAACCCGCCAGTGACTATTGCAACAAACAAAAAGCAAATGGAAATAGTGACTGGACCACCATACTT AGTTTCCTGTTCGCAATTGGTGCCATTGTTATGGCCACATTTTCCACAGGAATTGATTCACAATCATTTCAGTTCCGCAATGATAATGTTCAAGAGGATG ATGGTATCCCTTATGACTATGGGTTTTTCCACCTTGTATTTGCTTTCGGGGCCATGTACTTCGGAATGTTATTCATCAGTTGGAACCTGAACAACTCAGC AAGAAAGTGGAGCATTGATGTTGGCTGGGCAAGTACATGGGTGAAAATCGTGAATGAGTGGTTTGCAGCAACAATATACTTATGGAAGTTGATTTCCCCA ACTGTAAGACAGACCAAAGTCATGGATCATGAAGATTCAGTTAGACAGACAGTTGTTAATGTAGCCTTGCCGTGA
AA sequence Show only first row Show all	>Potri.003G174200.2 pacid=42786845 polypeptide=Potri.003G174200.2.p locus=Potri.003G174200 ID=Potri.003G174200.2.v4.1 annot-version=v4.1 MDQDARPAEAGAVDIRPSNSGVPQGEVNSRLEQKRIDYSREKKKTLQARYIYGIIFLIINLKAWFFRDYGQRVLSHFYNIKACGIDGQDCCHTLGVLRVS LGCFIFFSVMFFTTIKTRKLYEARSSWHSGWWAVKLVLLIVSMAVPFFLHSKYIQIYGEFARVGAGIFLVLQLVSVIEFITWWNNYWMPDEQKKQSCSLG LFMSTIFYLASVCGIVVMYAFYGRKVECSLNIFFITWTAILLIVMMAMSLHSKVNRGLLSSGIMASYLVFLCWSAIRSEPASDYCNKQKANGNSDWTTIL SFLFAIGAIVMATFSTGIDSQSFQFRNDNVQEDDGIPYDYGFFHLVFAFGAMYFGMLFISWNLNNSARKWSIDVGWASTWVKIVNEWFAATIYLWKLISP TVRQTKVMDHEDSVRQTVVNVALP

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G33205			Serinc-domain containing serin...		Potri.003G174200 [exp]	0	1
AT1G19440		KCS4	3-ketoacyl-CoA synthase 4 (.1)		Potri.009G116700 [exp]	8.30	0.8486
AT1G16670			Protein kinase superfamily pro...		Potri.010G221400 [exp]	8.83	0.7465
AT2G36080	B3	ABS2, NGAL1	AP2/B3-like transcriptional fa...		Potri.006G208100 [exp]	10.39	0.7893
AT4G35220			Cyclase family protein (.1)		Potri.009G097300 [exp]	11.22	0.7050
					Potri.005G043600 [exp]	11.44	0.6778
AT1G68410			Protein phosphatase 2C family ...		Potri.008G123600 [exp]	13.34	0.8002
AT2G46920		POL	poltergeist, Protein phosphata...		Potri.002G185000 [exp]	17.88	0.7260	POL.2
AT3G53820	C2H2ZnF		C2H2 and C2HC zinc fingers sup...		Potri.006G089301 [exp]	23.55	0.7453
AT5G03680	Trihelix	PTL	PETAL LOSS, Duplicated homeodo...		Potri.010G235000 [exp]	24.16	0.7795
AT1G10120	bHLH	bHLH074, CIB4	basic helix-loop-helix (bHLH) ...		Potri.005G146500 [exp]	25.33	0.7541

Compare expression of checked genes

Potri.003G174200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.