Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G24050 167 / 6e-51 GATA GATA1 GATA transcription factor 1 (.1) AT4G32890 130 / 3e-36 GATA GATA9 GATA transcription factor 9 (.1) AT3G60530 126 / 2e-35 GATA GATA4 GATA transcription factor 4 (.1) AT5G66320 129 / 3e-35 GATA GATA5 GATA transcription factor 5 (.1.2) AT5G25830 128 / 5e-35 GATA GATA12 GATA transcription factor 12 (.1) AT4G34680 125 / 1e-34 GATA GATA3 GATA transcription factor 3 (.1.2) AT3G51080 125 / 3e-34 GATA GATA6 GATA transcription factor 6 (.1) AT2G45050 124 / 4e-34 GATA GATA2 GATA transcription factor 2 (.1) AT3G54810 123 / 3e-33 GATA GATA8, BME3, BME3-ZF GATA TRANSCRIPTION FACTOR 8, BLUE MICROPYLAR END 3-ZINC FINGER, BLUE MICROPYLAR END 3, Plant-specific GATA-type zinc finger transcription factor family protein (.1.2) AT1G08010 121 / 7e-33 GATA GATA11 GATA transcription factor 11 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G053500 [exp] 375 / 1e-132 AT3G24050 171 / 4e-52 GATA transcription factor 1 (.1) Potri.002G142800 [exp] 132 / 1e-37 AT3G60530 189 / 1e-59 GATA transcription factor 4 (.1) Potri.001G188500 [exp] 133 / 3e-37 AT4G32890 201 / 7e-63 GATA transcription factor 9 (.1) Potri.005G117600 [exp] 130 / 4e-36 AT5G66320 236 / 2e-75 GATA transcription factor 5 (.1.2) Potri.007G016600 [exp] 130 / 1e-35 AT3G51080 179 / 2e-53 GATA transcription factor 6 (.1) Potri.009G123400 [exp] 129 / 2e-35 AT5G66320 179 / 8e-54 GATA transcription factor 5 (.1.2) Potri.004G161500 [exp] 129 / 2e-35 AT5G66320 178 / 2e-53 GATA transcription factor 5 (.1.2) Potri.014G058600 [exp] 125 / 6e-35 AT3G60530 189 / 7e-60 GATA transcription factor 4 (.1) Potri.018G044900 [exp] 128 / 9e-35 AT5G25830 247 / 2e-79 GATA transcription factor 12 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011762 [exp] 228 / 1e-74 AT3G24050 174 / 1e-53 GATA transcription factor 1 (.1) Lus10023684 [exp] 216 / 5e-71 AT3G24050 168 / 3e-52 GATA transcription factor 1 (.1) Lus10031096 [exp] 126 / 7e-37 AT5G66320 137 / 1e-40 GATA transcription factor 5 (.1.2) Lus10028178 [exp] 130 / 2e-36 AT2G45050 204 / 3e-65 GATA transcription factor 2 (.1) Lus10041810 [exp] 123 / 2e-34 AT5G66320 177 / 1e-54 GATA transcription factor 5 (.1.2) Lus10011430 [exp] 124 / 1e-33 AT4G32890 237 / 9e-77 GATA transcription factor 9 (.1) Lus10037572 [exp] 124 / 1e-33 AT4G32890 236 / 2e-76 GATA transcription factor 9 (.1) Lus10038273 [exp] 124 / 1e-33 AT4G32890 219 / 1e-69 GATA transcription factor 9 (.1) Lus10037398 [exp] 123 / 1e-33 AT1G08010 169 / 1e-50 GATA transcription factor 11 (.1.2) Lus10025829 [exp] 123 / 3e-33 AT4G32890 221 / 2e-70 GATA transcription factor 9 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0167 [poplar] [flax] Zn_Beta_Ribbon PF00320 [poplar] [flax] GATA GATA zinc finger
Representative CDS sequence Show only first row Show all	>Potri.003G174800.2 pacid=42787282 polypeptide=Potri.003G174800.2.p locus=Potri.003G174800 ID=Potri.003G174800.2.v4.1 annot-version=v4.1 ATGGAGTCTCTAGACACGGCTGCTGGTTTCATGGTTGATGACCTTTTGGACTTCTGTTCTGATATAGGCGAGGGAGATGATGACGAAGAACACCAGAACA ACAACAAAAAACCCAGAAAGGGACTTCCTTCCCTTAACCCTAATGCCCTTGCCTCGGCTTCTTTCAACGTTTTGGAACATACTTTGTTACCTGAATTTGC AGAGGAAGAACTGGAATGGTTATCAAATAAAGATGCTTTCCCAGCAGTGGAAACCTGCTTCGGCATTCTCTCCGAGGAGCCAGGCAGCATTCCCAAGCAC CACAGCCCAGTCTCCGTTCTTGAAAACAGTACCACTAGCAGCACTAGCATCAGTGGGAATAGCAGTAATAGTAGCATTATTATGAGTTACTGTAGCCTTC GCGTGCCTGTCAAGGCTCGCAGCAAGCGTCGCCACAGGCGCCCTCGAGAAATCCGAGAGCAAGAGCGCTGGTGGAGTCGGGAAAATTCTACAAGGAGAAA ACCAGCTGTGTCAGTAGCAAAAATGGGGAGAAAATGTCAGCATTGTGGTGTTGAAAAGACCCCGCAATGGCGGGCAGGTCCAGATGGGCCTAAAACGTTG TGTAATGCTTGCGGGGTGCGATACAAGTCTGGTAGGTTGGTGCCTGAGTATCGGCCTGCGAATAGTCCGACATTCTCCAGCAAATTGCACTCGAATTCAC ATCGGAAGGTTGTGGAGATGAGGAAGCAGAAGCAGATGATGGGGTCACTTGTTGTGAAGCCAATGGATAAAGGGTAG
AA sequence Show only first row Show all	>Potri.003G174800.2 pacid=42787282 polypeptide=Potri.003G174800.2.p locus=Potri.003G174800 ID=Potri.003G174800.2.v4.1 annot-version=v4.1 MESLDTAAGFMVDDLLDFCSDIGEGDDDEEHQNNNKKPRKGLPSLNPNALASASFNVLEHTLLPEFAEEELEWLSNKDAFPAVETCFGILSEEPGSIPKH HSPVSVLENSTTSSTSISGNSSNSSIIMSYCSLRVPVKARSKRRHRRPREIREQERWWSRENSTRRKPAVSVAKMGRKCQHCGVEKTPQWRAGPDGPKTL CNACGVRYKSGRLVPEYRPANSPTFSSKLHSNSHRKVVEMRKQKQMMGSLVVKPMDKG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G24050	GATA	GATA1	GATA transcription factor 1 (....		Potri.003G174800 [exp]	0	1
AT2G19480		NFA2, NFA02, NA...	NUCLEOSOME/CHROMATIN ASSEMBLY ...		Potri.003G021400 [exp]	10.48	0.8837	NFA903
AT5G22870			Late embryogenesis abundant (L...		Potri.009G003800 [exp]	15.81	0.8831
AT3G61172		LCR8	low-molecular-weight cysteine-...		Potri.016G061600 [exp]	16.88	0.8820
AT4G05220			Late embryogenesis abundant (L...		Potri.011G027400 [exp]	21.21	0.8744
AT1G54860			Glycoprotein membrane precurso...		Potri.005G034300 [exp]	24.73	0.8756
AT1G23530			unknown protein		Potri.010G041600 [exp]	33.67	0.8742
AT3G20570		AtENODL9	early nodulin-like protein 9 (...		Potri.001G419200 [exp]	36.18	0.8737
AT4G35160			O-methyltransferase family pro...		Potri.013G121800 [exp]	36.19	0.8711
AT5G11590	AP2_ERF	DREB3, TINY2	TINY2, Integrase-type DNA-bind...		Potri.018G043900 [exp]	38.76	0.7737
					Potri.001G388801 [exp]	38.83	0.8032

Compare expression of checked genes

Potri.003G174800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.