Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G33170 1350 / 0 Leucine-rich repeat receptor-like protein kinase family protein (.1) AT5G63930 1299 / 0 Leucine-rich repeat protein kinase family protein (.1) AT1G17230 1015 / 0 Leucine-rich receptor-like protein kinase family protein (.1) AT5G48940 649 / 0 Leucine-rich repeat transmembrane protein kinase family protein (.1) AT3G24240 625 / 0 Leucine-rich repeat receptor-like protein kinase family protein (.1) AT4G20140 612 / 0 GSO1 GASSHO1, Leucine-rich repeat transmembrane protein kinase (.1) AT1G34110 600 / 0 Leucine-rich receptor-like protein kinase family protein (.1) AT5G44700 597 / 0 GSO2, EDA23 GASSHO 2, EMBRYO SAC DEVELOPMENT ARREST 23, Leucine-rich repeat transmembrane protein kinase (.1) AT1G73080 595 / 0 ATPEPR1, PEPR1 PEP1 receptor 1 (.1) AT5G56040 593 / 0 Leucine-rich receptor-like protein kinase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G053400 [exp] 1865 / 0 AT2G33170 1311 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1) Potri.019G025500 [exp] 1360 / 0 AT5G63930 1320 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.013G051300 [exp] 1358 / 0 AT5G63930 1281 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.011G139700 [exp] 1022 / 0 AT1G17230 1363 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Potri.003G175700 [exp] 623 / 0 AT3G24240 1374 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1) Potri.008G009300 [exp] 621 / 0 AT1G73080 1064 / 0.0 PEP1 receptor 1 (.1) Potri.001G052500 [exp] 620 / 0 AT3G24240 1367 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1) Potri.003G156200 [exp] 618 / 0 AT4G20140 1394 / 0.0 GASSHO1, Leucine-rich repeat transmembrane protein kinase (.1) Potri.001G075000 [exp] 605 / 0 AT4G20140 1371 / 0.0 GASSHO1, Leucine-rich repeat transmembrane protein kinase (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023681 [exp] 1256 / 0 AT2G33170 1152 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1) Lus10011761 [exp] 933 / 0 AT5G63930 913 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10011756 [exp] 609 / 0 AT3G24240 1455 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1) Lus10000509 [exp] 607 / 0 AT1G34110 1464 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Lus10028612 [exp] 600 / 0 AT5G48940 1051 / 0.0 Leucine-rich repeat transmembrane protein kinase family protein (.1) Lus10018911 [exp] 592 / 0 AT3G24240 1033 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1) Lus10023677 [exp] 589 / 0 AT5G48940 1361 / 0.0 Leucine-rich repeat transmembrane protein kinase family protein (.1) Lus10032954 [exp] 586 / 0 AT5G56040 1399 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1.2) Lus10036251 [exp] 582 / 0 AT4G20140 1495 / 0.0 GASSHO1, Leucine-rich repeat transmembrane protein kinase (.1) Lus10039030 [exp] 578 / 0 AT1G73080 1095 / 0.0 PEP1 receptor 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Potri.003G174900.2 pacid=42786813 polypeptide=Potri.003G174900.2.p locus=Potri.003G174900 ID=Potri.003G174900.2.v4.1 annot-version=v4.1 ATGTCAGCATATTTCAGATCAAGTGGAGTATTTGAATTGGGGCTTGCTGGAATTTTGCTTGTTACCTTCCTATTGATATTTACCACAGAGGGGTTGAATT CTGATGGGCATCACCTCCTAGAGCTGAAGAATGCCCTCCATGACGAGTTCAATCATCTGCAGAATTGGAAGTCCACTGATCAGACACCATGCAGCTGGAC TGGCGTGAGTTGCACTTTAGACTATGAGCCTTTGGTCTGGTCTCTTGATTTGAACTCAATGAATCTTTCTGGGACACTGAGCCCCGGTATTGGTGGTTTG GTCAACCTTAGATATTTTGATCTTTCTCACAATGAAATCACCGGAGATATACCTAAAGCGATTGGAAATTGTTCCCTGTTGCAATACTTTTATTTGAATA ACAATCAGTTGAGTGGGGAAATTCCTGCTGAACTGGGTAGATTGTCTTTTCTTGAACGTTTGAATATATGCAACAACCAGATATCTGGTTCACTTCCAGA GGAGTTTGGCAGATTGTCTTCATTGGTTGAGTTTGTGGCTTATACCAACAAGCTGACTGGCCCGTTGCCTCGTTCCATAAGGAATCTTAAGAATTTGAAA ACAATCCGTGCAGGGCAGAATCAAATTTCTGGTAGTATTCCTGCTGAAATAAGTGGTTGTCAAAGCTTGAAATTGCTTGGTCTTGCCCAAAATAAAATTG GAGGGGAGCTGCCAAAGGAGCTTGCGATGCTAGGGAACTTAACTGAATTGATTTTATGGGAGAACCAGATCTCGGGGTTAATACCAAAAGAGCTTGGGAA CTGTACAAACCTTGAGACACTTGCTCTTTATGCAAATGCCCTTGCTGGACCAATACCAATGGAAATTGGGAACCTGAAGTTTCTGAAAAAGCTGTACCTC TATCGGAATGGATTGAATGGAACTATTCCAAGAGAAATTGGAAATCTTTCAATGGCAACAGAAATCGACTTCTCAGAGAATTTTTTGACTGGCAAGATCC CAACTGAGTTCAGTAAGATAAAGGGTCTACGACTTTTGTACCTCTTCCAGAACCAACTTACTGGTGTCATACCAAATGAGCTTAGTATCTTGAGGAACCT GACTAAGCTTGACCTCTCAATTAATCACCTCACTGGTCCTATTCCTTTTGGGTTTCAATATTTGACTGAAATGCTTCAGTTACAGCTTTTTAACAACTCT CTGAGTGGTGGCATTCCTCAGCGGCTTGGACTTTATAGCCAACTCTGGGTGGTTGATTTTTCAGATAATGATCTGACTGGAAGAATACCTCCTCATCTTT GCCGTCATTCTAATCTGATTTTGCTGAATCTGGATTCTAACAGGCTATATGGAAATATCCCGACTGGGGTCCTGAACTGCCAAACATTGGTACAACTTCG TCTTGTTGGAAATAAGTTTACAGGTGGCTTTCCTTCAGAGTTGTGCAAATTGGTGAACCTTTCTGCTATTGAACTGAACCAGAATATGTTTACTGGTCCA CTTCCACCAGAGATGGGGAACTGCCGAAGGTTGCAAAGACTTCATATTGCAAACAATTACTTTACTTCAGAGTTGCCAAAGGAATTAGGTAATCTGTCTC AACTTGTGACTTTTAATGCATCATCAAATTTGCTCACCGGAAAGATTCCACCTGAAGTTGTTAACTGCAAGATGCTTCAACGACTCGATCTCAGCCACAA CAGTTTTTCTGATGCTTTACCAGATGAGCTTGGAACTCTTCTTCAATTGGAGCTTCTTAGGCTTTCAGAAAATAAATTCTCTGGAAATATACCCTTGGCA TTAGGAAATCTCTCCCATTTGACTGAATTGCAGATGGGTGGCAACTCATTTTCTGGTCGAATTCCTCCCTCATTGGGCTTGCTTTCAAGCTTGCAGATTG GAATGAATCTCAGTTATAATAGTCTTACTGGCAGCATACCACCAGAGCTTGGCAATCTTAATTTACTGGAATTTCTCCTGCTCAATAACAATCATTTGAC CGGTGAGATTCCCAAAACATTTGAAAATCTGTCGAGTTTACTGGGATGCAACTTCTCATACAATGAGCTCACTGGGTCTTTGCCTTCCGGATCACTATTT CAGAACATGGCCATCAGCAGCTTTATTGGAAACAAAGGGCTTTGTGGTGGGCCTCTTGGCTACTGCAGTGGAGATACATCTTCTGGTTCTGTTCCACAGA AAAATATGGATGCTCCTCGAGGTAGGATCATCACAATTGTTGCAGCCGTTGTTGGTGGTGTTTCTCTCATTCTGATTATAGTGATACTATATTTCATGAG ACATCCCACTGCGACAGCCTCTTCGGTACATGATAAGGAGAATCCATCTCCAGAATCAAATATCTACTTCCCTCTAAAGGACGGAATCACCTTCCAAGAT CTGGTTCAGGCCACCAACAATTTTCATGACAGTTATGTTGTTGGAAGGGGAGCTTGCGGAACAGTTTATAAGGCAGTTATGCGTTCTGGGAAAACCATTG CTGTGAAAAAGCTTGCTTCTGATAGGGAGGGGAGTAGCATTGAGAACAGTTTTCAGGCTGAGATTCTGACTCTCGGAAAGATTAGGCACCGAAATATTGT GAAACTTTATGGCTTCTGCTATCACGAAGGTTCCAATCTGCTTCTTTATGAGTACTTGGCTAGGGGGAGCTTGGGTGAACTGCTTCATGGGCCCTCTTGT AGCTTGGAATGGTCAACTCGATTCATGGTTGCTCTTGGAGCTGCTGAAGGTCTTGCTTATTTACATCATGACTGCAAACCAATTATTATTCACCGTGACA TAAAGTCAAATAATATTCTACTAGATGATAACTTTGAAGCCCATGTTGGTGATTTTGGTTTGGCAAAAGTGATTGACATGCCCCAGTCCAAATCCATGTC AGCAGTCGCAGGATCATATGGGTATATTGCACCTGAATATGCGTACACAATGAAAGTTACTGAAAAATGTGACATCTATAGCTATGGAGTTGTTCTATTG GAGTTGCTAACTGGAAAAACTCCTGTACAGCCACTAGATCAAGGAGGTGATCTTGTCACATGGGCGAGACATTATGTTCGGGACCATTCATTGACATCCG GGATACTAGATGATCGATTGGACCTTGAAGACCAAAGCACTGTTGCTCACATGATTAGTGCATTGAAAATTGCTCTACTTTGCACGAGTATGTCACCTTT TGATCGGCCATCGATGCGGGAAGTTGTGTTGATGCTTATTGAGTCTAACGAGAGAGAAGGTAATTTGACTCTGTCTTCGACTTATGATTTTCCGTGGAAA GATGATATTTCACGAAAATAG
AA sequence Show only first row Show all	>Potri.003G174900.2 pacid=42786813 polypeptide=Potri.003G174900.2.p locus=Potri.003G174900 ID=Potri.003G174900.2.v4.1 annot-version=v4.1 MSAYFRSSGVFELGLAGILLVTFLLIFTTEGLNSDGHHLLELKNALHDEFNHLQNWKSTDQTPCSWTGVSCTLDYEPLVWSLDLNSMNLSGTLSPGIGGL VNLRYFDLSHNEITGDIPKAIGNCSLLQYFYLNNNQLSGEIPAELGRLSFLERLNICNNQISGSLPEEFGRLSSLVEFVAYTNKLTGPLPRSIRNLKNLK TIRAGQNQISGSIPAEISGCQSLKLLGLAQNKIGGELPKELAMLGNLTELILWENQISGLIPKELGNCTNLETLALYANALAGPIPMEIGNLKFLKKLYL YRNGLNGTIPREIGNLSMATEIDFSENFLTGKIPTEFSKIKGLRLLYLFQNQLTGVIPNELSILRNLTKLDLSINHLTGPIPFGFQYLTEMLQLQLFNNS LSGGIPQRLGLYSQLWVVDFSDNDLTGRIPPHLCRHSNLILLNLDSNRLYGNIPTGVLNCQTLVQLRLVGNKFTGGFPSELCKLVNLSAIELNQNMFTGP LPPEMGNCRRLQRLHIANNYFTSELPKELGNLSQLVTFNASSNLLTGKIPPEVVNCKMLQRLDLSHNSFSDALPDELGTLLQLELLRLSENKFSGNIPLA LGNLSHLTELQMGGNSFSGRIPPSLGLLSSLQIGMNLSYNSLTGSIPPELGNLNLLEFLLLNNNHLTGEIPKTFENLSSLLGCNFSYNELTGSLPSGSLF QNMAISSFIGNKGLCGGPLGYCSGDTSSGSVPQKNMDAPRGRIITIVAAVVGGVSLILIIVILYFMRHPTATASSVHDKENPSPESNIYFPLKDGITFQD LVQATNNFHDSYVVGRGACGTVYKAVMRSGKTIAVKKLASDREGSSIENSFQAEILTLGKIRHRNIVKLYGFCYHEGSNLLLYEYLARGSLGELLHGPSC SLEWSTRFMVALGAAEGLAYLHHDCKPIIIHRDIKSNNILLDDNFEAHVGDFGLAKVIDMPQSKSMSAVAGSYGYIAPEYAYTMKVTEKCDIYSYGVVLL ELLTGKTPVQPLDQGGDLVTWARHYVRDHSLTSGILDDRLDLEDQSTVAHMISALKIALLCTSMSPFDRPSMREVVLMLIESNEREGNLTLSSTYDFPWK DDISRK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G33170			Leucine-rich repeat receptor-l...		Potri.003G174900 [exp]	0	1
AT4G25230		RIN2	RPM1 interacting protein 2 (.1...		Potri.003G109400 [exp]	2.82	0.8103
AT1G32090			early-responsive to dehydratio...		Potri.003G099800 [exp]	3.00	0.8082
AT5G04940		SUVH1	SU(VAR)3-9 homolog 1 (.1), SU(...		Potri.006G027600 [exp]	3.16	0.8322
AT1G03610			Protein of unknown function (D...		Potri.017G152601 [exp]	3.74	0.8517
AT5G45540			Protein of unknown function (D...		Potri.015G114900 [exp]	6.70	0.8199
AT5G63930			Leucine-rich repeat protein ki...		Potri.019G025500 [exp]	7.34	0.8219
AT3G27010	TCP	ATTCP20, PCF1, ...	ARABIDOPSIS THALIANA TEOSINTE ...		Potri.001G060000 [exp]	7.48	0.8218
AT3G14470			NB-ARC domain-containing disea...		Potri.012G123400 [exp]	9.16	0.8162
AT3G22520			unknown protein		Potri.010G086700 [exp]	9.48	0.8039
AT4G24060	DOF	AtDof4,6	Dof-type zinc finger DNA-bindi...		Potri.001G086400 [exp]	10.58	0.7991	Pt-DOF4.2

Compare expression of checked genes

Potri.003G174900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.