Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G04650 899 / 0 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G053000 [exp] 1718 / 0 AT1G04650 861 / 0.0 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023676 [exp] 1152 / 0 AT1G04650 816 / 0.0 unknown protein Lus10011755 [exp] 1087 / 0 AT1G04650 752 / 0.0 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF14868 [poplar] [flax] DUF4487 Domain of unknown function (DUF4487)
Representative CDS sequence Show only first row Show all	>Potri.003G175300.2 pacid=42785865 polypeptide=Potri.003G175300.2.p locus=Potri.003G175300 ID=Potri.003G175300.2.v4.1 annot-version=v4.1 ATGGAGAGAAAAAGCTCCAGCAAGGAGTTGCAGGATCTTCTGCAAGCCATCAAATCTTCAGATGTTGTTGAGAGCCAGATTGAACTGGTTAACAAGCTTC GGGATTTTGATTTCCTGGAGATATCGGATTTGGCTTCTCTTCTTGAATTCCTCACAGTATTTTGGGAGGACTTTACTTGCTTGGATATATCTCAATGCAT GTTAAACAAGACTATTTTGAGCGTGGCTGCGAAATATGTAGATTCAGATGTGTCTGGATGTTTAGTACAGTTTCTTGCTCTCGGGACAAAGGCAAGTGGG TGGTGTGGAAAACATCTGAAGATGACTGCGATGTCAACTGAAGAATCTCAAGAAGAACATTCAAATTTATTCTTTCAGCTTCTTTTGGATTTATTTAGTC TCTCTGCTGCCAGTATGGTTGCTTTGAAAAGACACCCTGTTTTTGTTGACAATGCATCAGCAGCTACTGTTGAGAAATTCATTTTGGAACAGCTAAATTT GATAAAAGACGTAGTATCAGAGATTAAGAGGATCAACTCCTTCGGTTCAGAAGCATTAAAGGCTGCACAGACTGTGATTGATACTGTAGTGAGACTATGC AAAGGATATTTTGATGCTGTGAATTGGGATCTTTGTGATGCAAGACCTGAGAAGGATGAAAACAATACAGATTCAGAGAGAGCCAATATAATGAATCATG TTACGAACATAACAAAATGTACAATAGAGAAATTGTGTGAACTGGGGATCCTTGCAGCAAATGATGGTGGGAGTCTGGTAACCATTCTCAATGTGTCATG GAAAGGTGTGATTACCTTGCTTCAGCAAGGCAAGAGGGTGTTAAGAGAGATGTTAAGCGTGCAGGATATTATTCTAACCCTAATTTCACTGGTGAATGAA CCTCTCAGGTGTGCAGCCGGGGCTTGGTCTTCTTTATTGAAGGAAACCATTTCTTTAACTGAAGCCAGGAGGACATTTCTTCCATCTAAGTTTTACCTTA CCAACGCAGTGAAAATATCTTCCCTCTATCCATGCCAAGCATATTTGGTGTACAAGGAGGTGACCCTCTGTGTCATAATGATCTCATCCTTTAGAATTTT ACTGAGCTATGAAAAACTTTTGAACACAGCTAGTGAAGTGTTGTCAGAACTTTTGGAGAAGACATCAATAGATTTGCTGAATTCTTTACTCAATTCAGCT GAAGTGAAACAAGAGCTCAAGTTTAAACTTCTGGACTGGTTGTTCAATGATGATTTCTGCTCAAATTCTATGCATGGAGATTCAAGTAGTTTTTATCACA TGACTTCAATGGTTGAAATCTTTTCTGTGAGCTGTGAAGCTATGTCTGAAGCAAGATTATTGTTGCTTGGCAGGATTGCATTGTTTCATAATTTACTAAG ATATTCTATGGATCTTGAAGATGACATAAAGATCAAGATCACTAGAAAACTCAGATGGTTTCTGGATATGTTAGTTGTTGAAGATGTATACTCCTTCGTT CTTGATTTGCAGATTCCTGTGCCACATGGTTCGGGGAAAACACTGGAATTGATTTGGCAACCTATGTTTTCAGCTCTTTTGCATGCACTAAAAACCTTCA TGATTGCGGTGTCTTCAAGTTTTGCCTGGGCAGAATTTGAGGCTTTCCTGCTTGAAAATCTTTTCCATCCACATTTTCTTTGCTGGGAGATTGTAATGGA ACTTTGGTGCTTCTTAGTGCGTTATGCTGAAATGGACATGGTGAAAGGCATCATTGATAAACTTTGCTCATTAATGAAGCTACTGGAATCACCAGAATCA GTTCTTATTCCAGGTTCTCCTCTGAGGAAAGTGGCAAGGATAATCTGCTTGCTTGCTAAAAGTACACCACCTATGGCAGACCATGTATACAGCTCTGTTG TTGGTGACGGAAGATTTCAATTGTCATCAGTTCTGTATGCAGCCTTGCTCTTGGAAGGGTTCCCTCTAAATTCACTATCAGATAACATCAGAAGTGGTGC AAAACAGAAGATCATTACTGACTACTTTGGCTTCATAGGGAGTTTTGATGACAAAGTGTTGACTACTTGTAGTTCTGGTGCATTTGGGATTCCAGTTCAT GCTCTATCTGCATCCTTGCAGGCACAGCAGGTTAGCATATCTGATGTTGATGTGAAGACCCTTAAGTTTTTAGTTGCTATAATTCGTAACTTCAGAAACC CTGTCGAGAAAATAATGAAGGAACACTGTCATGAGCTTTTAAGTGAAATGTTGGGAATTGTGTCAAATATGAAGCATCTATACAAATCTGATGAGATGGA GGGAGTCCTATTGGAGCTTCAGAACCTGTTTGTCTCAGGGCCAGCAGCATCAAATACCCAATTGTATCAATGCAAACCATATCTTGCTCTTTTTATGGGA GGACTTGGAGACATGGAGATGACAGAGAGTGATGATTGTGCAAAAAGCTCTGCTGTGTGGGAGTTGTATCACATGCTATTCAGGGAGCGGCATTGGGCAC TTGTCCATCTTTCAATTGCGGCATTTGGATATTTTGCTGCTCGTACTACTTGCAATCAGCTATGGAGATTTGTGCCACAAAATGCATCGCTATCTTATGA TCTGGTGTCAGGGAATGAAGCAAGCGAGGAGAGGTTTATGTCTGAGTTGAAGGCATTTCTGGATAAGGAAGCAGCTCTTACCACTACACCTAGCATTGAG CAGCTTGAGTTGCTTGTGAAGGAAGGTATGATGCTGAAAGAAATGGTTCAGAAGATTTCAGGTATAGATGCTATGGAATGTCAAAGTATGGAGATTGATG TTGACAGCGTATCAAACAAGAGAAGGAAACTCCCTGATGGAATCAGCAAGGGATTGGAATTACTCCAGAATGGTCTGAAGGTTATTGGTGATGGTATTTC TCAGTGGCAGGAAAATCACTGTGAATCCTCCGAACTTCATGACAAATTTTCGAGCCACCTTTCTCGCCTTGAAGATGTCGTTGCTCACTTGACAGGCTTG GCTGGTAACGGTACTGCAGGAATGAATGTAAATAAAAGAATTAAGTGCTGA
AA sequence Show only first row Show all	>Potri.003G175300.2 pacid=42785865 polypeptide=Potri.003G175300.2.p locus=Potri.003G175300 ID=Potri.003G175300.2.v4.1 annot-version=v4.1 MERKSSSKELQDLLQAIKSSDVVESQIELVNKLRDFDFLEISDLASLLEFLTVFWEDFTCLDISQCMLNKTILSVAAKYVDSDVSGCLVQFLALGTKASG WCGKHLKMTAMSTEESQEEHSNLFFQLLLDLFSLSAASMVALKRHPVFVDNASAATVEKFILEQLNLIKDVVSEIKRINSFGSEALKAAQTVIDTVVRLC KGYFDAVNWDLCDARPEKDENNTDSERANIMNHVTNITKCTIEKLCELGILAANDGGSLVTILNVSWKGVITLLQQGKRVLREMLSVQDIILTLISLVNE PLRCAAGAWSSLLKETISLTEARRTFLPSKFYLTNAVKISSLYPCQAYLVYKEVTLCVIMISSFRILLSYEKLLNTASEVLSELLEKTSIDLLNSLLNSA EVKQELKFKLLDWLFNDDFCSNSMHGDSSSFYHMTSMVEIFSVSCEAMSEARLLLLGRIALFHNLLRYSMDLEDDIKIKITRKLRWFLDMLVVEDVYSFV LDLQIPVPHGSGKTLELIWQPMFSALLHALKTFMIAVSSSFAWAEFEAFLLENLFHPHFLCWEIVMELWCFLVRYAEMDMVKGIIDKLCSLMKLLESPES VLIPGSPLRKVARIICLLAKSTPPMADHVYSSVVGDGRFQLSSVLYAALLLEGFPLNSLSDNIRSGAKQKIITDYFGFIGSFDDKVLTTCSSGAFGIPVH ALSASLQAQQVSISDVDVKTLKFLVAIIRNFRNPVEKIMKEHCHELLSEMLGIVSNMKHLYKSDEMEGVLLELQNLFVSGPAASNTQLYQCKPYLALFMG GLGDMEMTESDDCAKSSAVWELYHMLFRERHWALVHLSIAAFGYFAARTTCNQLWRFVPQNASLSYDLVSGNEASEERFMSELKAFLDKEAALTTTPSIE QLELLVKEGMMLKEMVQKISGIDAMECQSMEIDVDSVSNKRRKLPDGISKGLELLQNGLKVIGDGISQWQENHCESSELHDKFSSHLSRLEDVVAHLTGL AGNGTAGMNVNKRIKC

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G04650			unknown protein		Potri.003G175300 [exp]	0	1
AT4G02630			Protein kinase superfamily pro...		Potri.005G139500 [exp]	1.00	0.9480
AT3G12180			Cornichon family protein (.1)		Potri.016G051000 [exp]	1.41	0.9395
AT3G48860			unknown protein		Potri.001G065800 [exp]	2.44	0.9318
AT1G80370		CYCA2;4	Cyclin A2;4 (.1)		Potri.003G058200 [exp]	3.16	0.9283
AT5G27450		MVK, MK	mevalonate kinase (.1.2.3)		Potri.005G035300 [exp]	3.87	0.9170
AT1G16170			unknown protein		Potri.001G038750 [exp]	5.65	0.9285
AT2G38020		EMB258, MAN, VC...	VACUOLELESS 1, MANGLED, vacuol...		Potri.002G057800 [exp]	6.00	0.9190	Pt-VCL1.3
AT5G05970		NEDD1	NEURAL PRECURSOR CELL EXPRESSE...		Potri.010G197700 [exp]	6.63	0.9218
AT1G10290		DRP2A, ADL6	DYNAMIN-RELATED PROTEIN 2A, dy...		Potri.003G001400 [exp]	6.92	0.9266	Pt-DH1.2
AT1G80190		PSF1	partner of SLD five 1 (.1)		Potri.006G142300 [exp]	7.61	0.8931

Compare expression of checked genes

Potri.003G175300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.