Plant FIBer expression Database

Potri.003G175500 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G052800
[exp]
83 / 3e-21 ND /
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.003G175500.2 pacid=42785424 polypeptide=Potri.003G175500.2.p locus=Potri.003G175500 ID=Potri.003G175500.2.v4.1 annot-version=v4.1
ATGGCTAGCTGGGTTGTGATTTTTGTGCTTGTTTTAGCATTTGTGCATGCAACAGCAGCACGTAATGTTCCAAGTGATGATGTTGATCTTGATAGCAATA
ATGCTGTCCCTAATGAAGAGCAAGTATTGCATGCTAGTGCACCAGCTGCCGATTCACCTAGCAGCACTGGCCTTAAAGACAAAAAGAATTTCATCTATGG
TGGTGTTGGTGGCTTTGCTGGAATGGGAGGTTACGCTGGTATCATTGGTGGTCTGCCAGTTATTGGTGGCCTTGGTGGAATTGGCAAATATGGAGGGGTT
GGAGGGGTTGGTGGAATAGGAGGTGCTACTGGCCTTGGCACTGGTGGTGCTGGTGGTGTAGGAGGTGCAGCTGGTGGTGCTGGTGGTTCGACTCTACCAT
CCCCTTAA
AA sequence
>Potri.003G175500.2 pacid=42785424 polypeptide=Potri.003G175500.2.p locus=Potri.003G175500 ID=Potri.003G175500.2.v4.1 annot-version=v4.1
MASWVVIFVLVLAFVHATAARNVPSDDVDLDSNNAVPNEEQVLHASAPAADSPSSTGLKDKKNFIYGGVGGFAGMGGYAGIIGGLPVIGGLGGIGKYGGV
GGVGGIGGATGLGTGGAGGVGGAAGGAGGSTLPSP

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.003G175500
[exp]
0 1
AT1G10630 ATARFA1F ADP-ribosylation factor A1F (.... Potri.008G100000
[exp]
11.31 0.9070 ARF1.3
AT4G28550 Ypt/Rab-GAP domain of gyp1p su... Potri.005G227400
[exp]
13.52 0.8834
AT2G17990 unknown protein Potri.005G115500
[exp]
16.49 0.8761
AT2G30395 OFP ATOFP17, OFP17 ovate family protein 17 (.1) Potri.013G155300
[exp]
20.63 0.8848
AT2G33990 IQD9 IQ-domain 9 (.1) Potri.004G053000
[exp]
33.98 0.8630
AT3G61660 unknown protein Potri.002G168300
[exp]
34.14 0.8493
AT3G09740 ATSYP71, SYP71 syntaxin of plants 71 (.1) Potri.016G088200
[exp]
38.10 0.8674 SYP71.2
AT1G27330 Ribosome associated membrane p... Potri.006G017100
[exp]
41.29 0.8592
AT4G02620 vacuolar ATPase subunit F fami... Potri.005G217600
[exp]
45.59 0.8497 VATF.1
AT5G26667 PYR6 P-loop containing nucleoside t... Potri.014G043300
[exp]
51.96 0.8602

Potri.003G175500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.