Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G13720 342 / 4e-121 Inosine triphosphate pyrophosphatase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G052400 [exp] 370 / 1e-132 AT4G13720 348 / 8e-124 Inosine triphosphate pyrophosphatase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023678 [exp] 360 / 8e-128 AT4G13720 357 / 9e-127 Inosine triphosphate pyrophosphatase family protein (.1) Lus10011757 [exp] 359 / 3e-127 AT4G13720 354 / 3e-125 Inosine triphosphate pyrophosphatase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0269 [poplar] [flax] Maf PF01725 [poplar] [flax] Ham1p_like Ham1 family
Representative CDS sequence Show only first row Show all	>Potri.003G175800.1 pacid=42785964 polypeptide=Potri.003G175800.1.p locus=Potri.003G175800 ID=Potri.003G175800.1.v4.1 annot-version=v4.1 ATGGAAATGGCGGCGGCAAAAGCAGCGTCTGGGGTGGTGGTGTCACGGCCGCTGACATTCGTGACCGGAAACGCAAAGAAGCTTGAAGAAGTCCGTGCAA TCTTGGGCCAAACCGTTCCTTTCCAATCTCTCAAACTTGACCTACCCGAGCTGCAAGGAGAACCTGAAGAAATCTCTAAAGAGAAAGCTCGTTTAGCTGC CGTAGAGGTGAAAGGGCCTGTTTTGGTGGAGGATACTTGTCTTTGCTTCAATGCCTTGAAGGGTCTTCCAGGGCCATACATCAAGTGGTTTCTGCAAAAG ATTGGTCATGAAGGTCTGAACAACTTGCTGATGGCATATGAGGACAAATCAGCCTATGCTTTATGTGCATATTCTTTTGCTCTTGGGCCTGATGCTGAAC CAATTACATTTCTTGGAAAAACTCTGGGGAAGATAGTTGCAGCGAGGGGACCTAATGATTTTGGATGGGATTCAATCTTTCAACCTGATGGCTATGAGCA AACTTATGCAGAGATGCCAAAGGATGAAAAGAACAAGATTTCTCACCGTTCCAGGGCTCTTGATTTGGTTAAATCCCACTTTGCTGAAGCTGGATACATT TTCGAGACAAATGACTCTAAAAAGAGTGAGCTATAG
AA sequence Show only first row Show all	>Potri.003G175800.1 pacid=42785964 polypeptide=Potri.003G175800.1.p locus=Potri.003G175800 ID=Potri.003G175800.1.v4.1 annot-version=v4.1 MEMAAAKAASGVVVSRPLTFVTGNAKKLEEVRAILGQTVPFQSLKLDLPELQGEPEEISKEKARLAAVEVKGPVLVEDTCLCFNALKGLPGPYIKWFLQK IGHEGLNNLLMAYEDKSAYALCAYSFALGPDAEPITFLGKTLGKIVAARGPNDFGWDSIFQPDGYEQTYAEMPKDEKNKISHRSRALDLVKSHFAEAGYI FETNDSKKSEL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G13720			Inosine triphosphate pyrophosp...		Potri.003G175800 [exp]	0	1
AT4G19540		INDH, INDL	IND1(iron-sulfur protein requi...		Potri.002G042600 [exp]	3.16	0.7523
AT1G20823			RING/U-box superfamily protein...		Potri.007G064401 [exp]	8.48	0.7375
AT5G26800			unknown protein		Potri.005G011800 [exp]	11.48	0.7498
AT1G60080			3'-5'-exoribonuclease family p...		Potri.016G055600 [exp]	15.00	0.7325
AT5G06210			RNA binding (RRM/RBD/RNP motif...		Potri.006G208500 [exp]	15.68	0.7125
AT1G66430			pfkB-like carbohydrate kinase ...		Potri.017G126300 [exp]	16.70	0.7810
AT3G48900			single-stranded DNA endonuclea...		Potri.015G142800 [exp]	19.62	0.7159
AT1G49970		SVR2, NCLPP5, C...	SUPPRESSOR OF VARIEGATION 2, N...		Potri.001G295266 [exp]	39.93	0.7381
AT3G10140		RECA3	RECA homolog 3 (.1)		Potri.016G057700 [exp]	41.83	0.7382
AT1G80380			P-loop containing nucleoside t...		Potri.001G177300 [exp]	43.90	0.7404

Compare expression of checked genes

Potri.003G175800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.