Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G13700 740 / 0 ATPAP23, PAP23 purple acid phosphatase 23 (.1) AT3G07130 630 / 0 ATPAP15, PAP15 purple acid phosphatase 15 (.1) AT2G32770 491 / 6e-169 PAP13, ATPAP13 purple acid phosphatase 13 (.1.2.3) AT3G52820 315 / 8e-102 ATPAP22, PAP22 purple acid phosphatase 22 (.1) AT3G52810 314 / 2e-101 ATPAP21, PAP21 purple acid phosphatase 21 (.1) AT3G52780 308 / 3e-99 ATPAP20, PAP20 Purple acid phosphatases superfamily protein (.1.2) AT3G20500 308 / 6e-99 ATPAP18, PAP18 purple acid phosphatase 18 (.1) AT1G56360 248 / 9e-76 PAP6, ATPAP6 purple acid phosphatase 6 (.1) AT2G16430 247 / 2e-75 ATPAP10, PAP10 purple acid phosphatase 10 (.1.2) AT5G34850 244 / 3e-74 ATPAP26, PAP26 purple acid phosphatase 26 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G055900 [exp] 672 / 0 AT3G07130 816 / 0.0 purple acid phosphatase 15 (.1) Potri.002G243900 [exp] 667 / 0 AT3G07130 805 / 0.0 purple acid phosphatase 15 (.1) Potri.017G055800 [exp] 585 / 0 AT3G07130 677 / 0.0 purple acid phosphatase 15 (.1) Potri.001G423700 [exp] 295 / 3e-94 AT3G20500 701 / 0.0 purple acid phosphatase 18 (.1) Potri.011G138200 [exp] 292 / 5e-93 AT3G20500 696 / 0.0 purple acid phosphatase 18 (.1) Potri.003G030700 [exp] 283 / 1e-89 AT3G52820 607 / 0.0 purple acid phosphatase 22 (.1) Potri.006G063700 [exp] 259 / 8e-80 AT5G34850 798 / 0.0 purple acid phosphatase 26 (.1) Potri.009G121200 [exp] 245 / 3e-74 AT2G16430 773 / 0.0 purple acid phosphatase 10 (.1.2) Potri.004G160100 [exp] 244 / 7e-74 AT2G16430 779 / 0.0 purple acid phosphatase 10 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028533 [exp] 897 / 0 AT4G13700 696 / 0.0 purple acid phosphatase 23 (.1) Lus10011847 [exp] 690 / 0 AT3G07130 830 / 0.0 purple acid phosphatase 15 (.1) Lus10022786 [exp] 686 / 0 AT3G07130 828 / 0.0 purple acid phosphatase 15 (.1) Lus10016667 [exp] 667 / 0 AT3G07130 788 / 0.0 purple acid phosphatase 15 (.1) Lus10016665 [exp] 598 / 0 AT3G07130 672 / 0.0 purple acid phosphatase 15 (.1) Lus10007119 [exp] 321 / 2e-105 AT3G07130 376 / 1e-127 purple acid phosphatase 15 (.1) Lus10040079 [exp] 316 / 5e-102 AT3G20500 686 / 0.0 purple acid phosphatase 18 (.1) Lus10019625 [exp] 315 / 1e-101 AT3G20500 673 / 0.0 purple acid phosphatase 18 (.1) Lus10021376 [exp] 311 / 5e-101 AT3G52780 539 / 0.0 Purple acid phosphatases superfamily protein (.1.2) Lus10017056 [exp] 308 / 3e-99 AT3G52780 562 / 0.0 Purple acid phosphatases superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0163 [poplar] [flax] Calcineurin PF00149 [poplar] [flax] Metallophos Calcineurin-like phosphoesterase CL0163 [poplar] [flax] PF14008 [poplar] [flax] Metallophos_C Iron/zinc purple acid phosphatase-like protein C CL0159 [poplar] [flax] E-set PF16656 [poplar] [flax] Pur_ac_phosph_N Purple acid Phosphatase, N-terminal domain
Representative CDS sequence Show only first row Show all	>Potri.003G176000.1 pacid=42786457 polypeptide=Potri.003G176000.1.p locus=Potri.003G176000 ID=Potri.003G176000.1.v4.1 annot-version=v4.1 ATGAATCACCTTAAACTATGGCTACTTATAAACACTTTCTTCATTACTATAATAACAACACAGACGTTACTTGCTCAAAACCAGATACCAACAACTCTCG ATGGCCCTTTTAAACCAGTAACTCGCAGGTTTGATCCTTCATTACGTAGAGGAAGTGATGACTTGCCAATGAACCATCCAAGACTTAAAAAGAACGCAAC TTCAAACTTCCCTGAACAGATATCACTTGCCATCTCCTCACCAACTTCAATGTGGGTTTCTTGGGTCACCGGGGAAGCACAGATTGGTTCTGATGTGATT CCTCTTGATCCTGCTTCTGTGGCAAGTGAGGTTTGGTATGGAAAAGAGAGTGGAAAGTACGCAAGTAGAGGAAAAGGAAATTCAACTGTTTATACTCAAT TGTATCCGTTTGAAGGACTTTCGAATTACACCTCTGGCATCATTCACCATGTGAGAATTGATGGTCTTGAACCTGGGACAAAGTACTTTTACAAGTGTGG AGATAGCTCTATCCCAGCTATGAGTGAAGAGCATGTCTTTGAAACATTACCTTTGCCTAGTCCAAATGCATACCCTCATCGAATAGCCATTATTGGAGAT CTGGGACTCACAAGCAACTCATCAACAACCATAGACCATGTGATCGTGAATGATCCATCAATGATTCTAATGGTTGGAGACCTAACTTATGCAAATCAAT ACCTTACAACTGGTGGAAAAGGAGCTCCATGCTACTCCTGTGCATTCCCTGATGCGCCTATAAGAGAGACGTATCAACCCCGCTGGGATGGCTGGGGAAG ATTCATGGAGCCACTTATCTCAAGCAGTCCTATGATGGTCATTGAAGGGAATCATGAGATTGAACCTCAGGTTTCTGGGATAACTTTCAAATCATATTTG ACTAGATACGCAGTTCCATCGGAAGAGTCTGGCTCTAACAGCAACTTCTATTATTCATTTGATGCTGGGGGCATACATTTTGTAATGTTAGGAGCATATG TTGACTACAACAGCACAGGTGCTCAGTATTCTTGGTTAAAGCAAGATCTAAATCAAGTAGACCGCGCTAAGACCCCTTGGCTGGTAGCCGCCTGGCATCC ACCATGGTATAATAGCTATTCCTCTCACTATCAGGAATTTGAATGCATGAGGCAGGAAATGGAAGCGCTTCTCTATCAATACCGTGTTGACATTGTCTTT TCTGGTCATGTGCATGCTTATGAGCGGATGAACAGAGTTTATAACTATACATTAGATCCATGTGGCCCCGTTTACATAACAGTTGGCGATGGTGGAAATA TTGAGAAAGTTGATGTCGATCATGCTGATGAACCTGGAAACTGTCCATCAGCTGGGGATAACATACCAGAATTTGGAGGGGTGTGTCATATTAATTTTTC TTCTGGTCCTGCTGAGGGCAAATTTTGTTGGGACAAGCAGCCTGAGTGGAGTGCATTTAGGGAGAGCAGCTTTGGGCATGGAATACTTGAGGTTGTGAAT TCCACATATGCATTGTGGACTTGGCACAGAAACCAGGATATTTACAAGGACGATAGTCACGGTGACCAAATATATGTTGTGCGGCAGCCTGAATTGTGCA TCGCTTCAACTTTAGAAGGAAGTGGCAAGCCTGAAGACGGAGGAGGTCTAACAAACGAAGCTGCTGATTTGTTAGCTAGATGGACGCGGTTCGCTGCATC GATAGAAATGCTCACAGTTGCTGTTATTTGGACATCATTCTACTGA
AA sequence Show only first row Show all	>Potri.003G176000.1 pacid=42786457 polypeptide=Potri.003G176000.1.p locus=Potri.003G176000 ID=Potri.003G176000.1.v4.1 annot-version=v4.1 MNHLKLWLLINTFFITIITTQTLLAQNQIPTTLDGPFKPVTRRFDPSLRRGSDDLPMNHPRLKKNATSNFPEQISLAISSPTSMWVSWVTGEAQIGSDVI PLDPASVASEVWYGKESGKYASRGKGNSTVYTQLYPFEGLSNYTSGIIHHVRIDGLEPGTKYFYKCGDSSIPAMSEEHVFETLPLPSPNAYPHRIAIIGD LGLTSNSSTTIDHVIVNDPSMILMVGDLTYANQYLTTGGKGAPCYSCAFPDAPIRETYQPRWDGWGRFMEPLISSSPMMVIEGNHEIEPQVSGITFKSYL TRYAVPSEESGSNSNFYYSFDAGGIHFVMLGAYVDYNSTGAQYSWLKQDLNQVDRAKTPWLVAAWHPPWYNSYSSHYQEFECMRQEMEALLYQYRVDIVF SGHVHAYERMNRVYNYTLDPCGPVYITVGDGGNIEKVDVDHADEPGNCPSAGDNIPEFGGVCHINFSSGPAEGKFCWDKQPEWSAFRESSFGHGILEVVN STYALWTWHRNQDIYKDDSHGDQIYVVRQPELCIASTLEGSGKPEDGGGLTNEAADLLARWTRFAASIEMLTVAVIWTSFY

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G13700		ATPAP23, PAP23	purple acid phosphatase 23 (.1...		Potri.003G176000 [exp]	0	1
AT4G23460			Adaptin family protein (.1)		Potri.003G130400 [exp]	2.64	0.9580
AT5G42560			Abscisic acid-responsive (TB2/...		Potri.005G237900 [exp]	4.47	0.9508
AT5G49460		ACLB-2	ATP citrate lyase subunit B 2 ...		Potri.010G145832 [exp]	8.48	0.9361
AT5G66920		SKS17	SKU5 similar 17 (.1)		Potri.007G038300 [exp]	8.83	0.9407
AT1G48880		TBL7	TRICHOME BIREFRINGENCE-LIKE 7 ...		Potri.005G060800 [exp]	9.94	0.9469
AT1G61667			Protein of unknown function, D...		Potri.004G029600 [exp]	10.00	0.9277
AT4G27080		ATPDI7, ATPDIL5...	ARABIDOPSIS THALIANA PROTEIN D...		Potri.011G135500 [exp]	10.77	0.9421
AT5G43420			RING/U-box superfamily protein...		Potri.010G072700 [exp]	11.74	0.9249
AT4G30160		ATVLN4, VLN4	villin 4 (.1.2)		Potri.018G089700 [exp]	12.84	0.9339	Pt-VLN4.2
AT5G23860		TUB8, b-TUB	tubulin beta 8 (.1.2)		Potri.016G107300 [exp]	12.96	0.9306

Compare expression of checked genes

Potri.003G176000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.