Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G04700 725 / 0 PB1 domain-containing protein tyrosine kinase (.1) AT3G24715 476 / 9e-150 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) AT2G35050 465 / 4e-144 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) AT1G16270 461 / 1e-143 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1.2) AT1G79570 457 / 4e-141 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) AT5G57610 425 / 5e-131 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) AT3G46920 427 / 1e-130 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) AT1G67890 187 / 8e-49 PAS domain-containing protein tyrosine kinase family protein (.1.2) AT5G49470 180 / 2e-48 PAS domain-containing protein tyrosine kinase family protein (.1.2.3.4) AT3G06640 179 / 1e-46 PAS domain-containing protein tyrosine kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G052000 [exp] 1701 / 0 AT1G04700 721 / 0.0 PB1 domain-containing protein tyrosine kinase (.1) Potri.001G123500 [exp] 472 / 3e-146 AT2G35050 660 / 0.0 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) Potri.003G110000 [exp] 469 / 1e-144 AT2G35050 672 / 0.0 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) Potri.005G095200 [exp] 457 / 3e-141 AT1G79570 641 / 0.0 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) Potri.007G069500 [exp] 453 / 4e-140 AT1G16270 994 / 0.0 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1.2) Potri.006G190200 [exp] 438 / 1e-132 AT3G46920 652 / 0.0 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) Potri.006G170700 [exp] 428 / 1e-131 AT5G57610 1087 / 0.0 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) Potri.018G114300 [exp] 429 / 3e-129 AT3G46920 646 / 0.0 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) Potri.018G095800 [exp] 419 / 2e-128 AT5G57610 1075 / 0.0 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038160 [exp] 489 / 2e-164 AT3G24715 527 / 2e-179 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) Lus10031749 [exp] 459 / 7e-148 AT1G16270 703 / 0.0 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1.2) Lus10031173 [exp] 459 / 5e-143 AT1G79570 963 / 0.0 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) Lus10001315 [exp] 428 / 4e-137 AT5G57610 657 / 0.0 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) Lus10040006 [exp] 436 / 4e-133 AT3G46920 604 / 0.0 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) Lus10006977 [exp] 428 / 3e-132 AT5G57610 1048 / 0.0 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) Lus10019577 [exp] 435 / 8e-132 AT3G46920 606 / 0.0 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) Lus10025941 [exp] 380 / 1e-113 AT3G24715 424 / 2e-129 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) Lus10038159 [exp] 205 / 3e-54 AT3G24715 229 / 4e-62 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) Lus10037772 [exp] 177 / 2e-45 AT3G06620 919 / 0.0 PAS domain-containing protein tyrosine kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0072 [poplar] [flax] Ubiquitin PF00564 [poplar] [flax] PB1 PB1 domain CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Potri.003G176100.2 pacid=42785749 polypeptide=Potri.003G176100.2.p locus=Potri.003G176100 ID=Potri.003G176100.2.v4.1 annot-version=v4.1 ATGACACATGAGACGCCTGGTAGCTCAGGCCAGCAGTTCTTTGGAGATAAAATGAAAGTTGTGACTAGGGACGGAATTCCTGCAGATGGAAATGTACATA ATATTTCTGTACAGACTGGTGAGGAATTTTCTCCCCAGTTTGCTCGAAGAAGAGTGCTGGATCATAACCAGCCAGGGCAAATGGGATTCAATTATAATCA GAACAATCCGATGGGTTCTGAAAATCATGCCGGCACTCATGGGGTAAGGAGAAAGGATTCTGATTGTGATGCTTCAGATCATGTTTCCAGGATAGAAGCC ACAGGACTTGCCGCTGAACTAGAAAATAGGGCTTATGCTGATAATGCAGGCAGATACCACTGGGAGTATGTTCCCAATGCACTAAAACCAAGTAACTATG TTGATGAAACAAATAATTCTGGTCGAGTAACCTTATGTCCGACCAGTTCACCTAACTGTGTTCCGGAAACCCCTTGGCCATATCAGCCTTTTGGAACTAG AGTTTCAGAAAGTGCTTTCTCTGGAAAAATGAAATTTCTATGCAGCTTTGGGGGGAGGATATTGCCAAGGCCAAATGATGGGAAGCTTAGATATGTTGGT GGAGAAACAAGGATCATATCCATCAGAAAAAATGTTACATGGGAGGAGCTTGCAAAGAAAACTTTGGCGATTTGTGACCAACCTCATACGATCAAGTACC AGCTCCCTGGTGAGGATCTTGATGCACTTATTTCTGTTTCTTCTGATGAAGATCTTCATCACATGATAGAGGAATATCAAGGGCTTGAAAAAAATGGAGG CTCACAAAGACTGCGTATATTTCTTGTTTCTTCCGGTGAACCTGACAGCCCAAATTCTTTTGAAGGTAAGACCTCACAACAGTGTAATGCTGATTGTCAG TATGTTGTTGCTGTTAATGGCATGCTGGACCACAGTCCCCAGAAGAGCTCTAGTGGACAGAGTTCTGCGAGCCAACTAGGAACTGCATCAGATTATAAGA ATCAATCTCCTCCCGTGAGTCCAGTTAACATTCAGTACAGAGGTCATAAGAATTCTAAAAGCTTATTTTATGTTGATCAACCTTTCCCTGACAATAATAA AAATATCGGTACTTTTGCTGCGGACAAATTTCCATTTGACACTGCATTTTATAATAATCTTCCTCATGGGCCGATTCCATCGGTGAATCAAGTTTGTTAT CAACAATATCCAGGGGAAACTGATCAGACTAGCAAACAACTTGAAATGCATCTTCATAATCGTAGCCAGAGCGGAGATTTCCCTTCTTATCAACAACGTC CTCAAAATTCTATGAATTCGGACTGGCCTGCGATTATGGAAAGGGCATTTTCTGACTCGCAGTTGCAGGAAAATGGTGAGGTGGCAGAAAAATGGTTGGA AGAAGCAGTTATTCTGCTGTCCCTCAGGAATGATGGAATGGGAAAATCATCTTCACTGAAAATGTCAAATTCATCCTTAGAAAGGCCAGTGCTGGCACCA TATATAATGGATGAGAAACACCAATTGATTGAGTTCGAGAATCATTGCAATGAAGAGCTGAGTTATATTGACTTAGAGCAAGAGGTGCTGAAGTGGATGA ACAGGAATGCTAACTATTCTGATGTAGGCAGACAACAGTATGAAGGAAATGTTGAAGTTGCACTAAATGATAATGCCATGGAGCATAGGAACTTACCGAA TTTAAACTTCCCACCAAGTGCTTATCGTCATCCTCTAGATTCTCAAGCATATGGAAGGATGGTTTCAGCTACTCGAGTTAACACTTCCGAAAATTATGCA GATGCTATGAAGGAGCACCCTAAGAGTCACCAATCAGACACTATTGCACCTGATTTTTTTGTTAAGAGCCATAAGGTTGCCAAGGAACAGCAGTGTACTA TGACTGAGAGCAAAGATGGTCAACGAATTCTCCATTGGGATCCTGAATATCTACCTTCTGCATCTCTTGGATCAAGGGACAAGGGACCAAAAGTCCCCAG CTCTAAATCCAACAGGAGTGCTTCAAGTAGATTGGATTCCTTGTGTCATGAAGACCCTGTGAATTATAATGAAAAGGTCGAAAAGATTCATGACAAGGGA CTATCATATAAGGAATCAATCGATGGAGATGCTCTATATGTCCAGTCACAGCCTTTAGATAACCATCATGATGATAAGATAGCAGAGCCAGTGGTAATTG TTGAGGATGTTACTGGAACTACGCCTCCAGATATTCCCTTTTCTTTGAATGTTGTCCCACGAGTAGAAGAAGAGCTCGCAGAGGGATTTCAATCTGATGG AGTTATTGAGGTAGAAAGCACGGGTCAAGAATATGAATCTGAGGATATTGAAGGTGATGACAAAGACGTGAATGATTCCATTAGTGATGCTGCGATGGCT GAAATAGAAGCAGGCATCTATCGTTTGCAGATCATAAGGAATGCAGATATTGAAGAAGAGCAGGAATTAGGATCTGGCACATTTGGAACTGTTTATTATG GGAAATGGAGAGGTACTGATGTTGCTATTAAAAGGATCAAAAGGAGTTGTTTTTCAGGCAACTCATCAGAGCAAGAGCGATTGAGTAGAGACTTCTGGAG AGAGGCACGCATCCTATCAGATCTTCATCATCCAAATGTGTTAGCATTTTATGGTGTGGTCCCTGACGGCCCTGGGGGAACAATGGCAACTGTGACTGAA TATATGGTAAATGGATCATTGAGGCGTGTCTTGCAAAAGAAGGATAGATCACTTGATCGTCGAAAAAAGCTTATAGTCGCTCTCGATGCTGCTTTTGGCA TGGAATATCTGCATTTGAGAGATATCATTCATTTTGATTTGAAGTGCGACAATTTGCTTGTCAATTTAAGGGATCCCCAACGCCCCATATGCAAGGTTGG AGATTTCGGATTGTCAAAAATTAAAAGGAACACGCTCGTATCTGGTGGTGTGCGTGGAACCCTTCCATGGATGGCACCAGAGTTATTGGATGGCACCAGC AACCGAGTCTCTGAGAAGGTTGATGTTTTCTCGTTTGGCATCGCAATGTGGGAGATCCTGACTGGTGAAGAGCCATATGCCAACATGCAATTCGGCGCTA TAATAGGTGGAATTGTAAGCAGCACGCTGAGGCCTCCTGTACCAGAACACTGCGATACAGGATGGAGAAAGTTGATGGAAGAATGCTGGGCCTCTGATCC AGAAGCCAGACCATCGTTTACAGAGATAACAAATAGGCTGCGAAGCATGTCAACAGCACTCCAGCCAAAGCGACCTAATTATGCAAATAGATGA
AA sequence Show only first row Show all	>Potri.003G176100.2 pacid=42785749 polypeptide=Potri.003G176100.2.p locus=Potri.003G176100 ID=Potri.003G176100.2.v4.1 annot-version=v4.1 MTHETPGSSGQQFFGDKMKVVTRDGIPADGNVHNISVQTGEEFSPQFARRRVLDHNQPGQMGFNYNQNNPMGSENHAGTHGVRRKDSDCDASDHVSRIEA TGLAAELENRAYADNAGRYHWEYVPNALKPSNYVDETNNSGRVTLCPTSSPNCVPETPWPYQPFGTRVSESAFSGKMKFLCSFGGRILPRPNDGKLRYVG GETRIISIRKNVTWEELAKKTLAICDQPHTIKYQLPGEDLDALISVSSDEDLHHMIEEYQGLEKNGGSQRLRIFLVSSGEPDSPNSFEGKTSQQCNADCQ YVVAVNGMLDHSPQKSSSGQSSASQLGTASDYKNQSPPVSPVNIQYRGHKNSKSLFYVDQPFPDNNKNIGTFAADKFPFDTAFYNNLPHGPIPSVNQVCY QQYPGETDQTSKQLEMHLHNRSQSGDFPSYQQRPQNSMNSDWPAIMERAFSDSQLQENGEVAEKWLEEAVILLSLRNDGMGKSSSLKMSNSSLERPVLAP YIMDEKHQLIEFENHCNEELSYIDLEQEVLKWMNRNANYSDVGRQQYEGNVEVALNDNAMEHRNLPNLNFPPSAYRHPLDSQAYGRMVSATRVNTSENYA DAMKEHPKSHQSDTIAPDFFVKSHKVAKEQQCTMTESKDGQRILHWDPEYLPSASLGSRDKGPKVPSSKSNRSASSRLDSLCHEDPVNYNEKVEKIHDKG LSYKESIDGDALYVQSQPLDNHHDDKIAEPVVIVEDVTGTTPPDIPFSLNVVPRVEEELAEGFQSDGVIEVESTGQEYESEDIEGDDKDVNDSISDAAMA EIEAGIYRLQIIRNADIEEEQELGSGTFGTVYYGKWRGTDVAIKRIKRSCFSGNSSEQERLSRDFWREARILSDLHHPNVLAFYGVVPDGPGGTMATVTE YMVNGSLRRVLQKKDRSLDRRKKLIVALDAAFGMEYLHLRDIIHFDLKCDNLLVNLRDPQRPICKVGDFGLSKIKRNTLVSGGVRGTLPWMAPELLDGTS NRVSEKVDVFSFGIAMWEILTGEEPYANMQFGAIIGGIVSSTLRPPVPEHCDTGWRKLMEECWASDPEARPSFTEITNRLRSMSTALQPKRPNYANR

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G04700			PB1 domain-containing protein ...		Potri.003G176100 [exp]	0	1
AT4G34280			transducin family protein / WD...		Potri.009G092500 [exp]	26.30	0.5794
AT5G65110		ATACX2, ACX2	acyl-CoA oxidase 2 (.1.2)		Potri.005G077600 [exp]	30.00	0.5759
AT5G07010		ATST2A	ARABIDOPSIS THALIANA SULFOTRAN...		Potri.001G036500 [exp]	44.29	0.5279
AT5G52510	GRAS	SCL8	SCARECROW-like 8 (.1)		Potri.004G078800 [exp]	54.12	0.5514
AT1G35220			unknown protein		Potri.002G100800 [exp]	57.94	0.5207
AT5G42690			Protein of unknown function, D...		Potri.002G128400 [exp]	63.27	0.5346
AT1G66340		AtETR1, EIN1, E...	ETHYLENE RESPONSE 1, ETHYLENE ...		Potri.001G204200 [exp]	75.71	0.5013	Pt-ETR1.1,ETR3
AT3G61590		HWS, HS	HAWAIIAN SKIRT, Galactose oxid...		Potri.002G166500 [exp]	76.13	0.5117
AT5G14720			Protein kinase superfamily pro...		Potri.001G349300 [exp]	77.07	0.5139
AT3G19420		PTEN2A, ATPEN2	phosphatase and TENsin homolog...		Potri.009G098000 [exp]	157.61	0.4783

Compare expression of checked genes

Potri.003G176100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.