Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G24220 719 / 0 ATNCED6, NCED6 nine-cis-epoxycarotenoid dioxygenase 6 (.1) AT1G78390 642 / 0 ATNCED9, NCED9 nine-cis-epoxycarotenoid dioxygenase 9 (.1) AT3G14440 632 / 0 SIS7, ATNCED3, STO1, NCED3 SALT TOLERANT 1, SUGAR INSENSITIVE 7, nine-cis-epoxycarotenoid dioxygenase 3 (.1) AT1G30100 605 / 0 ATNCED5, NCED5 nine-cis-epoxycarotenoid dioxygenase 5 (.1) AT4G18350 585 / 0 ATNCED2, NCED2 nine-cis-epoxycarotenoid dioxygenase 2 (.1) AT4G19170 336 / 1e-107 CCD4, NCED4 carotenoid cleavage dioxygenase 4, nine-cis-epoxycarotenoid dioxygenase 4 (.1) AT3G63520 313 / 2e-99 ATNCED1, ATCCD1, CCD1 carotenoid cleavage dioxygenase 1 (.1) AT4G32810 119 / 3e-28 MAX4, CCD8, ATCCD8 MORE AXILLARY BRANCHING 4, carotenoid cleavage dioxygenase 8 (.1) AT2G44990 64 / 2e-10 MAX3, CCD7, ATCCD7 carotenoid cleavage dioxygenase 7 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G393800 [exp] 638 / 0 AT3G14440 883 / 0.0 SALT TOLERANT 1, SUGAR INSENSITIVE 7, nine-cis-epoxycarotenoid dioxygenase 3 (.1) Potri.011G112400 [exp] 632 / 0 AT3G14440 868 / 0.0 SALT TOLERANT 1, SUGAR INSENSITIVE 7, nine-cis-epoxycarotenoid dioxygenase 3 (.1) Potri.011G084100 [exp] 602 / 0 AT1G30100 799 / 0.0 nine-cis-epoxycarotenoid dioxygenase 5 (.1) Potri.009G152200 [exp] 367 / 9e-120 AT4G19170 546 / 0.0 carotenoid cleavage dioxygenase 4, nine-cis-epoxycarotenoid dioxygenase 4 (.1) Potri.009G151900 [exp] 362 / 7e-118 AT4G19170 548 / 0.0 carotenoid cleavage dioxygenase 4, nine-cis-epoxycarotenoid dioxygenase 4 (.1) Potri.009G152300 [exp] 355 / 2e-115 AT4G19170 539 / 0.0 carotenoid cleavage dioxygenase 4, nine-cis-epoxycarotenoid dioxygenase 4 (.1) Potri.019G093400 [exp] 338 / 3e-108 AT4G19170 803 / 0.0 carotenoid cleavage dioxygenase 4, nine-cis-epoxycarotenoid dioxygenase 4 (.1) Potri.005G069100 [exp] 334 / 1e-106 AT4G19170 812 / 0.0 carotenoid cleavage dioxygenase 4, nine-cis-epoxycarotenoid dioxygenase 4 (.1) Potri.001G265600 [exp] 325 / 5e-104 AT3G63520 878 / 0.0 carotenoid cleavage dioxygenase 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023673 [exp] 738 / 0 AT3G24220 706 / 0.0 nine-cis-epoxycarotenoid dioxygenase 6 (.1) Lus10011750 [exp] 691 / 0 AT3G24220 657 / 0.0 nine-cis-epoxycarotenoid dioxygenase 6 (.1) Lus10026185 [exp] 525 / 0 AT3G14440 682 / 0.0 SALT TOLERANT 1, SUGAR INSENSITIVE 7, nine-cis-epoxycarotenoid dioxygenase 3 (.1) Lus10035696 [exp] 337 / 6e-108 AT4G19170 813 / 0.0 carotenoid cleavage dioxygenase 4, nine-cis-epoxycarotenoid dioxygenase 4 (.1) Lus10029513 [exp] 333 / 5e-105 AT3G63520 901 / 0.0 carotenoid cleavage dioxygenase 1 (.1) Lus10019710 [exp] 323 / 6e-103 AT3G63520 842 / 0.0 carotenoid cleavage dioxygenase 1 (.1) Lus10016410 [exp] 326 / 8e-100 AT3G63520 842 / 0.0 carotenoid cleavage dioxygenase 1 (.1) Lus10042482 [exp] 275 / 6e-87 AT1G78390 374 / 4e-125 nine-cis-epoxycarotenoid dioxygenase 9 (.1) Lus10042481 [exp] 206 / 3e-63 AT1G78390 271 / 2e-88 nine-cis-epoxycarotenoid dioxygenase 9 (.1) Lus10008443 [exp] 213 / 4e-63 AT4G19170 315 / 1e-102 carotenoid cleavage dioxygenase 4, nine-cis-epoxycarotenoid dioxygenase 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03055 [poplar] [flax] RPE65 Retinal pigment epithelial membrane protein
Representative CDS sequence Show only first row Show all	>Potri.003G176300.3 pacid=42787299 polypeptide=Potri.003G176300.3.p locus=Potri.003G176300 ID=Potri.003G176300.3.v4.1 annot-version=v4.1 ATGCAAGGCTCTCTTAACTTCTCCACCACCGCCACCGTCTCTCCCAGGCCTGCATCCTCAATCTCCAAACATACACCATTAATCACATGCAAGATCCTCA TTAACCCCTCCAAGAAAAATGTTAGTCCCATAAAACTGCCAATGGCACCGCCAGTACCCTTGCCAGAACCGGCACCTCCATTTCTTGAATCTGAACCAAC ATCCATCCCAACAGAAAGAACTACCCCCCCAACTCATCTAAATCCTTTTCAAAGTCTTGCAGCTGCTGTTTTAGACAAAATTGAGACCTCACTAATTGTA CCGTTTGAGAAAAAAGTTGTATTGCCGAAAACGATTGACCCAGCGGTTCAAATGTCGGGTAATTTTTCGCCGGCTCAAGAGTGTCCGGTTCATCACAGTC TGGAAGTTGTGGGGCAGATTCCCGATACCTTACGTGGGGTTTACCTACGCAACGGCGCTAATCCTCTGCATGCACCCACAGGGGGACACCACTTGTTTGA TGGTGATGGTATGATCCATGCGGTTACCTTGGGCTCTGGAAACCGAGCCAGCTATAGCTGTAGATACACCCGCACAAGCCGGTTCGAGCAAGAAGCCCAA CTAGGAAGGCCTTTGTTTCCTAAGCCAATTGGTGAGTTGCATGGTCACCTAGGCTTGGCTCGGCTGGCTCTTTTCATGGCTCGAGCTGCAGTCGGCTTTG TTGATGGGACACGTGGCAGCGGTGTAGCCAATGCCGGGCTTGTCTATTTTAACGGTAGATTACTGGCGATGTCAGAGGATGATCTTCCTTATAATGTTAA GATCAAGAGTGACGGCGATATGGAAACGATCGGACGGTTCAATTTTGATGATCAGCTTGATTGTCCCATGATTGCACACCCTAAGGTGGACCCTGTAACT GGTGAGCTCCATGCACTTAGTTACAACGTTATCAAGAAACCCTATCTAAAGTACTTTAGATTTGATGCATGCGCTAAGAAGTCATGTGACTTGGATGTTA CATTGGACCAGCCAACTATGATCCACGACTTTGCAATCACAAAAAATTTTATGGTGATCCCGGATCACCAAGTCGTGTTCAAGTTATCGGAGATGATTCG AGGCGGGTCACCCGTAATTTATGATCAAAGCAAGATTTCACGGTTTGGAGTCTTGTCAAAAAAAGCTGTCGATGATTCAAGAATTCAGTGGATTGACGTT CCGGATTGCTTTTGTTTCCATTTGTGCAATGCATGGGAAGAGAATTCTAGTGACGGAGACAAGATTATTGTTGTTATCGGGTCGTGCATGGACCCGCCTG ATTCCATCTTCAACCAATCTGAACACCCGCTTCGAAGTGAGTTGTCTGAAATCCGTTTGAATCTGAGGACAGGAGAGTCAACTCGAAGGGTTATTGTCGG GGGTATGAATTTGGAAGCGGGTCAAGTAAACCGAAGGTTTCTAGGTCAAAAAACCCGGTTCGTTTACCTAGCAATTGCAGAGCCTTGGCCAAAGTGTAGT GGAATTGCAAAAGTTGATTTGGAGACTGACGAGGTGACCAAATTTATTTATGGTGCTGGTAGGTTTGGTGGTGAGCCATGTTACGTGCCCAAAAATGGAA ATGTTGGCGATAATGGAAGAAGTGATGATGACGGCGAAGGCTTCATAATGGGTTTCGTGAGAGATGAGGAAAAGGGGAGGTCAGAATTGGTGATAGTGAA TTCATCGAGCATGAGTCAAGTAGCTTCAGTGAAAATGCCCACTAGAGTGCCCTATGGCTTCCATGGTACTTTTGTCAGCGAAGCTGATTTAAAACAACAA TCTGTGTGA
AA sequence Show only first row Show all	>Potri.003G176300.3 pacid=42787299 polypeptide=Potri.003G176300.3.p locus=Potri.003G176300 ID=Potri.003G176300.3.v4.1 annot-version=v4.1 MQGSLNFSTTATVSPRPASSISKHTPLITCKILINPSKKNVSPIKLPMAPPVPLPEPAPPFLESEPTSIPTERTTPPTHLNPFQSLAAAVLDKIETSLIV PFEKKVVLPKTIDPAVQMSGNFSPAQECPVHHSLEVVGQIPDTLRGVYLRNGANPLHAPTGGHHLFDGDGMIHAVTLGSGNRASYSCRYTRTSRFEQEAQ LGRPLFPKPIGELHGHLGLARLALFMARAAVGFVDGTRGSGVANAGLVYFNGRLLAMSEDDLPYNVKIKSDGDMETIGRFNFDDQLDCPMIAHPKVDPVT GELHALSYNVIKKPYLKYFRFDACAKKSCDLDVTLDQPTMIHDFAITKNFMVIPDHQVVFKLSEMIRGGSPVIYDQSKISRFGVLSKKAVDDSRIQWIDV PDCFCFHLCNAWEENSSDGDKIIVVIGSCMDPPDSIFNQSEHPLRSELSEIRLNLRTGESTRRVIVGGMNLEAGQVNRRFLGQKTRFVYLAIAEPWPKCS GIAKVDLETDEVTKFIYGAGRFGGEPCYVPKNGNVGDNGRSDDDGEGFIMGFVRDEEKGRSELVIVNSSSMSQVASVKMPTRVPYGFHGTFVSEADLKQQ SV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G24220		ATNCED6, NCED6	nine-cis-epoxycarotenoid dioxy...		Potri.003G176300 [exp]	0	1
AT4G35190		LOG5	LONELY GUY 5, Putative lysine ...		Potri.004G181800 [exp]	5.65	0.8754
AT5G60490		FLA12	FASCICLIN-like arabinogalactan...		Potri.015G013300 [exp]	6.08	0.8956
					Potri.017G041400 [exp]	6.48	0.8251
AT1G30760			FAD-binding Berberine family p...		Potri.011G161500 [exp]	6.63	0.8882
AT1G18010			Major facilitator superfamily ...		Potri.012G011000 [exp]	6.92	0.8603
AT1G57680			unknown protein		Potri.012G023500 [exp]	8.71	0.8300
AT1G77330			2-oxoglutarate (2OG) and Fe(II...		Potri.005G182700 [exp]	9.79	0.8565	ACO4
AT1G02170		AtMCP1b, ATMC1,...	LSD ONE LIKE 3, ARABIDOPSIS TH...		Potri.017G052600 [exp]	11.83	0.7922
AT5G47900			Protein of unknown function (D...		Potri.001G071500 [exp]	12.96	0.7856
AT3G61230	LIM	PLIM2c	PLIM2c, GATA type zinc finger ...		Potri.003G124300 [exp]	17.88	0.8331

Compare expression of checked genes

Potri.003G176300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.