Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G04790 264 / 3e-78 RING/U-box superfamily protein (.1) AT3G55530 82 / 5e-17 SDIR1 SALT- AND DROUGHT-INDUCED RING FINGER1, RING/U-box superfamily protein (.1) AT1G71980 72 / 4e-13 Protease-associated (PA) RING/U-box zinc finger family protein (.1) AT5G66160 69 / 3e-12 JR700, ATRMR1 ARABIDOPSIS THALIANA RECEPTOR HOMOLOGY REGION TRANSMEMBRANE DOMAIN RING H2 MOTIF PROTEIN 1, receptor homology region transmembrane domain ring H2 motif protein 1 (.1.2) AT2G44581 64 / 5e-12 RING/U-box superfamily protein (.1) AT2G44578 64 / 8e-12 RING/U-box superfamily protein (.1) AT5G01980 68 / 9e-12 RING/U-box superfamily protein (.1) AT1G22670 67 / 2e-11 Protease-associated (PA) RING/U-box zinc finger family protein (.1) AT5G60820 66 / 6e-11 RING/U-box superfamily protein (.1) AT1G14200 62 / 6e-11 RING/U-box superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G201500 [exp] 82 / 7e-17 AT3G55530 310 / 2e-106 SALT- AND DROUGHT-INDUCED RING FINGER1, RING/U-box superfamily protein (.1) Potri.009G034700 [exp] 74 / 4e-14 AT3G55530 333 / 1e-115 SALT- AND DROUGHT-INDUCED RING FINGER1, RING/U-box superfamily protein (.1) Potri.013G111500 [exp] 75 / 8e-14 AT1G71980 427 / 5e-147 Protease-associated (PA) RING/U-box zinc finger family protein (.1) Potri.019G082500 [exp] 73 / 2e-13 AT1G71980 449 / 3e-156 Protease-associated (PA) RING/U-box zinc finger family protein (.1) Potri.004G122000 [exp] 62 / 2e-11 AT1G26800 94 / 1e-24 RING/U-box superfamily protein (.1) Potri.012G065300 [exp] 67 / 3e-11 AT5G08139 178 / 4e-51 RING/U-box superfamily protein (.1) Potri.001G162000 [exp] 65 / 3e-11 AT1G53820 149 / 2e-43 RING/U-box superfamily protein (.1) Potri.015G047900 [exp] 66 / 5e-11 AT5G08139 201 / 3e-60 RING/U-box superfamily protein (.1) Potri.001G435800 [exp] 64 / 6e-11 AT3G20395 153 / 4e-46 RING/U-box superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023671 [exp] 477 / 2e-158 AT1G04790 232 / 7e-67 RING/U-box superfamily protein (.1) Lus10011747 [exp] 249 / 9e-73 AT1G04790 185 / 2e-50 RING/U-box superfamily protein (.1) Lus10004977 [exp] 73 / 9e-14 AT3G55530 371 / 1e-130 SALT- AND DROUGHT-INDUCED RING FINGER1, RING/U-box superfamily protein (.1) Lus10006074 [exp] 74 / 1e-13 AT1G71980 466 / 2e-162 Protease-associated (PA) RING/U-box zinc finger family protein (.1) Lus10000513 [exp] 73 / 1e-13 AT3G55530 389 / 7e-138 SALT- AND DROUGHT-INDUCED RING FINGER1, RING/U-box superfamily protein (.1) Lus10016936 [exp] 74 / 2e-13 AT1G71980 483 / 1e-169 Protease-associated (PA) RING/U-box zinc finger family protein (.1) Lus10002706 [exp] 72 / 2e-13 AT3G55530 382 / 5e-135 SALT- AND DROUGHT-INDUCED RING FINGER1, RING/U-box superfamily protein (.1) Lus10001568 [exp] 72 / 2e-13 AT3G55530 361 / 9e-127 SALT- AND DROUGHT-INDUCED RING FINGER1, RING/U-box superfamily protein (.1) Lus10014823 [exp] 74 / 3e-13 AT1G71980 488 / 3e-168 Protease-associated (PA) RING/U-box zinc finger family protein (.1) Lus10009438 [exp] 73 / 3e-13 AT1G71980 329 / 1e-108 Protease-associated (PA) RING/U-box zinc finger family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.003G176500.4 pacid=42784920 polypeptide=Potri.003G176500.4.p locus=Potri.003G176500 ID=Potri.003G176500.4.v4.1 annot-version=v4.1 ATGGAAGATATGAATTCTGATCAGGTATTTGAAATACCTGACACTCCAGAGAGAGCAGCTGCAAGGAGTATAAATGGTGCACAATTCAGAAAAGAAAGTA TTTCGTCAGTTCCTGGTTGTCTAAGAAAGTCTGGCTTTGTGGATGAAAAGAGTTTTAATCCGCCGCGGACAAGCAGGGGTAGGATTTTTAGTGAAAATGG GCTCAATAGAAGACTTCATTTGCTTCCTCAAAAGAGTCCCATTAATGTTGATGAATATGATTCTCCAAGTAATTCTGCTTTGGATTCCCATCCCCACCAG AATGCGCCTTTATTTAGAAGGCCAGCAATAGTTAATAACTCCAGGCCTGAGAATAGGCATTCTAAAGGAGCACAGTATATGGAAAAATCAAAAGCTGGCC GTGCTACAAGTTCCTCTAAAAAACCATTTTGCATGGAAGGTGATGATCTTTTTGATTTAACTGAGATGAGTGAGCCTGACAGATTACTCGACTTTGTTTT TCCTCACAGTGCATCAAAAGATCTCCAAGCTAAAGAGACAAGAGAAGGTCAATTATCATCTAATGGTGGCTCTTCTGTACAGCTGGCTCCCCTTCCTTCA AGAATATCTGGCAGCACCTCTAAGGGAAAGGAAAAAATAGATGTGAATACATGTAATGGTTCTGGTTCAGCTTCAAATAATGTGAAAGAGATTGATCATG CTAGTGGTCATCAACACAAAATCGAAAAGCAGCTTCCTGCTTGTCATCTATCTGTTACCTCACCAAGAGTTGGTGGGAAAAAGAGATTAGTGCGAAATGG ATGTATTTCTCCACATAATATAGCCACTAGAGCCCAAAAATTAGCTGAAAGTTCCCAGGATGGCTCCCCAGGTGACGAAAGAAATCATGCCAGGAACAAG TTGTCTGATGGTCCACCTAACATAGATCTTAGGGAAATAGTTGCTGAAGACAATGATTGTTATAGAGCTAAAGGAAAAAAGGCAATAGTCCATCCTTCTG CATCAAAGGAGCATGATGCCAACATGACCAGAAGTTCTGCGACTAATAATAAAGCATCCCGTGAATCCAGGGATGGCTGTAGAGATGCATTATTTGGTGG CTGGAGAAGTACACACAAAAGATCGAAGACACAAGATCAGCCACTGTCTTATATGGAACAGGGTATTTTGGGAAGAGATGATCATGCCAGATGCTCTACA AATGAACATGATGACAGACTAGTGGAAAGAGATAGCAGCAGTGGTGGAAAACTACATCATGTTGGGAATCTAGTTGCTACGTATGGATTAACTTCAAGAA ATCAAGGTGAATGCTCTACAATAGTTCCTGATGACACAGAAGTTTTGTTTCTTGGTTCATCTCGGGAATCATCTAGCTCAAGGTCATCTAGAGTCCACAA TCATCAACATGATGGCAATCTAGAACCAATTTATGAAATTGATGAGTTGTTGACTGAAGTGAGAAACAATGATCCTCAATTAATAGGTTTCAGAAGTAAT GAGGACTCAGATGTTACGGCAAGGCAAGTGGAAGCTGATGAGATGTTGGCTCGGGAACTACAAGAACGATTATATCATGAGGAACCAACATTTGGAGGTG GCGAGATTGATGAAAATATAGCATGGGTCCTGCAGCAGGAGGAAGATGCACTCCCTGCTACATCTGGTCACAATCATCCTGTTCCACATCTTAGAAACTC ATTGGTAGCACATTCATCAAGACAGCGCTTGCCTCGGTCCTCTCATAACCCTTCAAATAGGAGAGGAAACCAGGTTCAAGTTACTACTACCCGAGCATCG GGCTTGAGGAGTCGCTTGTCCAACCGTACTCCTGTAAGAATATCAAGAGAGAGGAACCCATTTCCCACAGTGTTCCCTGGAGGGTTGAATTTCCAATTTC CTTCGGGAATGGATTTAGAGATGAGACTTAATATATTGGAAAATTTAGAGGCTTCAATGACAGCAACCCGCATGCTTCATGTTCAGCGTGATTTTAATGA GAATGATTATGAAATGCTGTTGGCCCTTGATGAGAACAATTCTCAACATGGTGCATCTGCCAATCAAATTAACTGCTTGCCAGAGTCCGTGGTACAGACT GATAACTTTGGAGAGACCTGTGCTGTCTGCCTTGAAGCCCCAACTATTGGAGAAAAAATACGTCATCTCCCTTGTTTACACAAATTTCACAAAGATTGTA TTGATCCTTGGCTCAGCAGAAAAACATCATGCCCGATTTGCAAATCGTCTATAACTTCTTGA
AA sequence Show only first row Show all	>Potri.003G176500.4 pacid=42784920 polypeptide=Potri.003G176500.4.p locus=Potri.003G176500 ID=Potri.003G176500.4.v4.1 annot-version=v4.1 MEDMNSDQVFEIPDTPERAAARSINGAQFRKESISSVPGCLRKSGFVDEKSFNPPRTSRGRIFSENGLNRRLHLLPQKSPINVDEYDSPSNSALDSHPHQ NAPLFRRPAIVNNSRPENRHSKGAQYMEKSKAGRATSSSKKPFCMEGDDLFDLTEMSEPDRLLDFVFPHSASKDLQAKETREGQLSSNGGSSVQLAPLPS RISGSTSKGKEKIDVNTCNGSGSASNNVKEIDHASGHQHKIEKQLPACHLSVTSPRVGGKKRLVRNGCISPHNIATRAQKLAESSQDGSPGDERNHARNK LSDGPPNIDLREIVAEDNDCYRAKGKKAIVHPSASKEHDANMTRSSATNNKASRESRDGCRDALFGGWRSTHKRSKTQDQPLSYMEQGILGRDDHARCST NEHDDRLVERDSSSGGKLHHVGNLVATYGLTSRNQGECSTIVPDDTEVLFLGSSRESSSSRSSRVHNHQHDGNLEPIYEIDELLTEVRNNDPQLIGFRSN EDSDVTARQVEADEMLARELQERLYHEEPTFGGGEIDENIAWVLQQEEDALPATSGHNHPVPHLRNSLVAHSSRQRLPRSSHNPSNRRGNQVQVTTTRAS GLRSRLSNRTPVRISRERNPFPTVFPGGLNFQFPSGMDLEMRLNILENLEASMTATRMLHVQRDFNENDYEMLLALDENNSQHGASANQINCLPESVVQT DNFGETCAVCLEAPTIGEKIRHLPCLHKFHKDCIDPWLSRKTSCPICKSSITS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G04790			RING/U-box superfamily protein...		Potri.003G176500 [exp]	0	1
AT1G17640			RNA-binding (RRM/RBD/RNP motif...		Potri.003G040900 [exp]	5.65	0.8018
AT4G14790		ATSUV3, EDA15	embryo sac development arrest ...		Potri.010G084100 [exp]	5.74	0.7829
AT5G10900			Calcineurin-like metallo-phosp...		Potri.001G196600 [exp]	6.00	0.7894
AT1G10970		ATZIP4, ZIP4	zinc transporter 4 precursor (...		Potri.018G053300 [exp]	10.95	0.7593
AT4G25280			P-loop containing nucleoside t...		Potri.015G129000 [exp]	14.86	0.7468
AT3G55270		MKP1, ATMKP1	ARABIDOPSIS MITOGEN-ACTIVATED ...		Potri.008G049900 [exp]	16.73	0.7733	Pt-MKP1.2
AT5G50970			transducin family protein / WD...		Potri.012G108100 [exp]	17.49	0.7261
AT4G02050		STP7	sugar transporter protein 7 (....		Potri.006G189100 [exp]	20.56	0.7573	STA.1
AT5G61450			P-loop containing nucleoside t...		Potri.003G108000 [exp]	21.02	0.7340
AT3G59910			Ankyrin repeat family protein ...		Potri.007G146500 [exp]	21.77	0.7652

Compare expression of checked genes

Potri.003G176500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.