Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G23940 1011 / 0 dehydratase family (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G051700 [exp] 1154 / 0 AT3G23940 960 / 0.0 dehydratase family (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033370 [exp] 1043 / 0 AT3G23940 1013 / 0.0 dehydratase family (.1.2) Lus10034822 [exp] 1038 / 0 AT3G23940 1009 / 0.0 dehydratase family (.1.2) Lus10032616 [exp] 1037 / 0 AT3G23940 1162 / 0.0 dehydratase family (.1.2) Lus10043132 [exp] 1018 / 0 AT3G23940 1148 / 0.0 dehydratase family (.1.2) Lus10032617 [exp] 140 / 7e-40 AT3G23940 139 / 5e-40 dehydratase family (.1.2) Lus10043131 [exp] 129 / 7e-35 AT3G23940 139 / 6e-39 dehydratase family (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00920 [poplar] [flax] ILVD_EDD Dehydratase family
Representative CDS sequence Show only first row Show all	>Potri.003G176600.4 pacid=42787245 polypeptide=Potri.003G176600.4.p locus=Potri.003G176600 ID=Potri.003G176600.4.v4.1 annot-version=v4.1 ATGCAATCCACCTTCGTTTCCCCACGCGCCACCCCTCTAAAACCCAAAACCCCATTCCCCACCCGCCTCCCTCCCTCTTCTCTTCTCGTCAAAGCCCAGT CTGTTGCCGTAGAACCGTCACAGGCAACAAGCACAGTAGCACAAAAGCTAAACAAGTACAGTTCCCGCATTACCGAACCCAAATCTCAAGGTGGGTCTCA AGCGATCCTTCATGGGGTTGGTTTATCGGATGATGACATGTCTAAGCCTCAGATAGGTATCTCTTCAGTTTGGTATGAAGGGAATACTTGTAACATGCAC TTGCTGAAGCTATCAGAGGCTGTTAAAAGAGGGGTCGAAGAGGCAGGAATGGTTGGTTTCAGGTTTAATACAATTGGTGTCAGTGATGCTATTTCAATGG GGACTAGAGGGATGTGCTATAGCTTGCAAAGTAGAGACTTGATTGCTGATAGTATTGAGACTGTTATGAGTGCTCAATGGTATGATGGCAACATCTCCAT TCCCGGCTGTGATAAAAATATGCCAGGTACAATCATGGCAATGGGGAGGCTGAATCGACCTAGCATCATGGTTTATGGTGGAACTATCAAGCCTGGTCAT TTCAACGGTCATACTTATGATATAGTATCTGCATTTCAGGTTTATGGAGAGTATGTAAGTGGATCTATTAGTGATGATGAAAGAAAAAATGTAGTTCATA ATTCATGCCCTGGAGCAGGGGCATGTGGTGGAATGTATACAGCTAACACAATGGCTTCTGCTATTGAAGCCTTGGGAATGTCTCTTCCCTACAGCTCTTC AATACCTGCTGAAAACCAATTGAAGTTGGATGAGTGCCGTTTAGCTGGAAAATATCTGCTAGAACTATTAAAGATGGACTTGAAACCACGAGACATTATC ACTTGCAAGTCACTACGTAATGCAATGGTCATTGTCATGGCACTAGGCGGCTCTACTAATGCCGTGTTACACTTAATTGCAATTGCAAGGTCTGTTGGGT TGGAGTTAACCCTCGATGATTTTCAGAAGGTCAGTGATGAGGTTCCATTCCTTGCAGATCTGAAACCTAGTGGCAAATATGTTATGGAGGATGTGCATAA GATTGGGGGAACACCTGCTGTCCTTCGCTACCTTTTGGAGCATGGTTTTCTGGACGGTGACTGTTTGACTGTCACTGGGAAGACATTGGCTGAAAATGTG CAAAATTGTCCACCATTGTCGGAGGGGCAGGAGATAATAAGATCATTGGAAAACCCTATTAAGCAAACAGGTCACCTCCAAATATTACGTGGAAATCTTG CACCAGAGGGTTCTGTAGCTAAAATTACTGGAAAAGAAGGGTTATATTTCTCTGGTCCTGCACTTGTATTTGAGGGAGAGGAATCTATGATTGCAGCTAT CTCTGAGGATCCCATGAGTTTTAAGGGAAAGGTAGTAGTTATTAGAGGAGAGGGGCCAAAAGGAGGACCGGGCATGCCTGAAATGCTAACACCAACAAGT GCTATAATGGGAGCAGGGCTTGGAAAGGACTGTGCATTGTTGACTGATGGTAGATTTTCAGGAGGTTCACATGGATTTGTTGCTGGTCACATATGCCCTG AAGCACAGGAAGGTGGTCCAATTGGTCTCATTAGAAATGGAGATATCATTAATGTTGATGTCAGGGAGAGGAGAATAGATGTTCAGTTAACGGATTCCGA ATTGGAAGAACGACGGAAAAATTGGACTCCACCTCCATACAAGGCCACTCGAGGAGTTTTATACAAGTACATCAAGAACGTGCAATCTGCTTCAGAGGGA TGTGTAACAGATGAATAG
AA sequence Show only first row Show all	>Potri.003G176600.4 pacid=42787245 polypeptide=Potri.003G176600.4.p locus=Potri.003G176600 ID=Potri.003G176600.4.v4.1 annot-version=v4.1 MQSTFVSPRATPLKPKTPFPTRLPPSSLLVKAQSVAVEPSQATSTVAQKLNKYSSRITEPKSQGGSQAILHGVGLSDDDMSKPQIGISSVWYEGNTCNMH LLKLSEAVKRGVEEAGMVGFRFNTIGVSDAISMGTRGMCYSLQSRDLIADSIETVMSAQWYDGNISIPGCDKNMPGTIMAMGRLNRPSIMVYGGTIKPGH FNGHTYDIVSAFQVYGEYVSGSISDDERKNVVHNSCPGAGACGGMYTANTMASAIEALGMSLPYSSSIPAENQLKLDECRLAGKYLLELLKMDLKPRDII TCKSLRNAMVIVMALGGSTNAVLHLIAIARSVGLELTLDDFQKVSDEVPFLADLKPSGKYVMEDVHKIGGTPAVLRYLLEHGFLDGDCLTVTGKTLAENV QNCPPLSEGQEIIRSLENPIKQTGHLQILRGNLAPEGSVAKITGKEGLYFSGPALVFEGEESMIAAISEDPMSFKGKVVVIRGEGPKGGPGMPEMLTPTS AIMGAGLGKDCALLTDGRFSGGSHGFVAGHICPEAQEGGPIGLIRNGDIINVDVRERRIDVQLTDSELEERRKNWTPPPYKATRGVLYKYIKNVQSASEG CVTDE

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G23940			dehydratase family (.1.2)		Potri.003G176600 [exp]	0	1
AT3G03250		AtUGP1, UGP1, U...	UDP-GLUCOSE PYROPHOSPHORYLASE ...		Potri.013G070001 [exp]	1.41	0.8159
AT4G31120		PRMT5, SKB1 ,AT...	PROTEIN ARGININE METHYLTRANSFE...		Potri.018G000500 [exp]	1.73	0.8318
AT2G05120			Nucleoporin, Nup133/Nup155-lik...		Potri.002G221300 [exp]	3.46	0.8104
AT5G63920		TOP3A, AtTOP3al...	topoisomerase 3alpha (.1)		Potri.005G067100 [exp]	4.00	0.7576
AT1G26460			Tetratricopeptide repeat (TPR)...		Potri.010G159100 [exp]	4.58	0.7885
AT3G18580			Nucleic acid-binding, OB-fold-...		Potri.012G058800 [exp]	4.89	0.7974
AT1G09800			Pseudouridine synthase family ...		Potri.003G008500 [exp]	5.65	0.7862
AT2G04560		AtLpxB	lipid X B, transferases, trans...		Potri.014G160300 [exp]	8.48	0.7520
AT5G57870		eIFiso4G1	eukaryotic translation Initiat...		Potri.006G265300 [exp]	8.77	0.7747
AT2G37690			phosphoribosylaminoimidazole c...		Potri.019G012300 [exp]	8.83	0.7912	Pt-PURE.2

Compare expression of checked genes

Potri.003G176600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.