Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	CHS6,Pt-CHS.4
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G13930 693 / 0 ATCHS, TT4, CHS TRANSPARENT TESTA 4, CHALCONE SYNTHASE, Chalcone and stilbene synthase family protein (.1) AT4G00040 299 / 8e-99 Chalcone and stilbene synthase family protein (.1) AT4G34850 292 / 3e-96 LAP5 LESS ADHESIVE POLLEN 5, Chalcone and stilbene synthase family protein (.1) AT1G02050 275 / 2e-89 LAP6 LESS ADHESIVE POLLEN 6, Chalcone and stilbene synthase family protein (.1) AT4G34520 61 / 5e-10 KCS18, FAE1 FATTY ACID ELONGATION1, 3-ketoacyl-CoA synthase 18 (.1) AT4G34250 59 / 3e-09 KCS16 3-ketoacyl-CoA synthase 16 (.1) AT3G52160 57 / 7e-09 KCS15 3-ketoacyl-CoA synthase 15 (.1) AT4G34510 57 / 8e-09 KCS17, KCS2 3-ketoacyl-CoA synthase 17 (.1) AT1G68530 55 / 4e-08 KCS6, CER6, POP1, G2, CUT1 POLLEN-PISTIL INCOMPATIBILITY 1, CUTICULAR 1, ECERIFERUM 6, 3-ketoacyl-CoA synthase 6 (.1.2) AT1G71160 54 / 8e-08 KCS7 3-ketoacyl-CoA synthase 7 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G176800 [exp] 802 / 0 AT5G13930 693 / 0.0 TRANSPARENT TESTA 4, CHALCONE SYNTHASE, Chalcone and stilbene synthase family protein (.1) Potri.001G051500 [exp] 775 / 0 AT5G13930 692 / 0.0 TRANSPARENT TESTA 4, CHALCONE SYNTHASE, Chalcone and stilbene synthase family protein (.1) Potri.001G051600 [exp] 775 / 0 AT5G13930 692 / 0.0 TRANSPARENT TESTA 4, CHALCONE SYNTHASE, Chalcone and stilbene synthase family protein (.1) Potri.003G176700 [exp] 758 / 0 AT5G13930 684 / 0.0 TRANSPARENT TESTA 4, CHALCONE SYNTHASE, Chalcone and stilbene synthase family protein (.1) Potri.014G145100 [exp] 714 / 0 AT5G13930 679 / 0.0 TRANSPARENT TESTA 4, CHALCONE SYNTHASE, Chalcone and stilbene synthase family protein (.1) Potri.012G138800 [exp] 551 / 0 AT5G13930 531 / 0.0 TRANSPARENT TESTA 4, CHALCONE SYNTHASE, Chalcone and stilbene synthase family protein (.1) Potri.001G028600 [exp] 515 / 0 AT5G13930 510 / 0.0 TRANSPARENT TESTA 4, CHALCONE SYNTHASE, Chalcone and stilbene synthase family protein (.1) Potri.005G175200 [exp] 419 / 5e-147 AT5G13930 425 / 2e-149 TRANSPARENT TESTA 4, CHALCONE SYNTHASE, Chalcone and stilbene synthase family protein (.1) Potri.014G056300 [exp] 308 / 1e-101 AT1G02050 595 / 0.0 LESS ADHESIVE POLLEN 6, Chalcone and stilbene synthase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023670 [exp] 728 / 0 AT5G13930 693 / 0.0 TRANSPARENT TESTA 4, CHALCONE SYNTHASE, Chalcone and stilbene synthase family protein (.1) Lus10031622 [exp] 563 / 0 AT5G13930 526 / 0.0 TRANSPARENT TESTA 4, CHALCONE SYNTHASE, Chalcone and stilbene synthase family protein (.1) Lus10033717 [exp] 560 / 0 AT5G13930 518 / 0.0 TRANSPARENT TESTA 4, CHALCONE SYNTHASE, Chalcone and stilbene synthase family protein (.1) Lus10011746 [exp] 532 / 0 AT5G13930 524 / 0.0 TRANSPARENT TESTA 4, CHALCONE SYNTHASE, Chalcone and stilbene synthase family protein (.1) Lus10041508 [exp] 479 / 2e-170 AT5G13930 473 / 5e-168 TRANSPARENT TESTA 4, CHALCONE SYNTHASE, Chalcone and stilbene synthase family protein (.1) Lus10011745 [exp] 414 / 2e-146 AT5G13930 389 / 6e-137 TRANSPARENT TESTA 4, CHALCONE SYNTHASE, Chalcone and stilbene synthase family protein (.1) Lus10026286 [exp] 308 / 2e-102 AT4G34850 650 / 0.0 LESS ADHESIVE POLLEN 5, Chalcone and stilbene synthase family protein (.1) Lus10042388 [exp] 301 / 1e-99 AT4G34850 636 / 0.0 LESS ADHESIVE POLLEN 5, Chalcone and stilbene synthase family protein (.1) Lus10011744 [exp] 293 / 1e-99 AT5G13930 283 / 4e-96 TRANSPARENT TESTA 4, CHALCONE SYNTHASE, Chalcone and stilbene synthase family protein (.1) Lus10039904 [exp] 293 / 2e-96 AT1G02050 577 / 0.0 LESS ADHESIVE POLLEN 6, Chalcone and stilbene synthase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0046 [poplar] [flax] Thiolase PF00195 [poplar] [flax] Chal_sti_synt_N Chalcone and stilbene synthases, N-terminal domain CL0046 [poplar] [flax] Thiolase PF08541 [poplar] [flax] ACP_syn_III_C 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal
Representative CDS sequence Show only first row Show all	>Potri.003G176900.1 pacid=42784864 polypeptide=Potri.003G176900.1.p locus=Potri.003G176900 ID=Potri.003G176900.1.v4.1 annot-version=v4.1 ATGGTGACCGTTGATGAAATTCGGAAGTCGCAACGGGCGGAGGGTCCTGCCACCATCATGGCCATAGGAACATCAACCCCTCCAAACTGTGTTGATCAGA GCACGTATCCTGAATATTATTTTCGCATCACAAACAGTGAGCATAAGGCGGAGCTTAAAGAAAAATTCAAGCGAATGTGTGAGAAATCCATGATCAAGAA GCGGTACATGTACTTGACTGAGGAGATCTTGAAAGAAAATCCTAGTGTGTGTGAATACATGGCACCTTCATTGGATGCTAGACAGGACATGGTGGTGGTG GAGGTACCAAAGTTAGGGAAAGAAGCAGCTACCAAGGCCATCAAGGAATGGGGTCAGCCCAAGTCCAAAATAACTCATTTGGTGTTTTGCACAACCAGTG GTGTGGACATGCCCGGGGCTGACTATCAGCTCACTAAGCTTTTGGGTCTCCGCTCATCGGTCAAACGTTTTATGATGTATCAACAAGGTTGTTTTGCTGG TGGCACGGTGCTCCGCCTTGCTAAGGACCTCGCCGAGAACAACAAAGGCGCTCGTGTGCTAGTCGTGTGCTCTGAAATAACAGCCGTGACATTTCGAGGC CCTAGCGATACTCATCTTGATAGCCTTGTTGGTCAAGCATTGTTTGGCGATGGCGCAGCTGCTCTTGTAATAGGCTCTGATCCAGTGATAGGAGTCGAGA AGCCTTTATTTGAGCTAGTCTCAGCAGCCCAAACTATTCTACCCGACAGCGATGGGGCTATAGATGGACATCTCCGTGAAGTTGGGCTTACATTTCACCT CCTCAAGGATGTTCCTGGGCTTATTTCAAAGAATGTTGAGAAGAGCCTGACTGAGGCGTTCAAGCCTCTGGGCATCTCGGACTGGAACTCCCTTTTCTGG ATAGCGCACCCTGGTGGACCAGCAATTCTAGACCAGGTGGAGGCTAAGTTGGCGCTGAAACCAGAGAAACTGCGAGCCACTAGACATGTGCTGAGTGAGT ATGGAAATATGTCGAGTGCCTGTGTTCTGTTTATTTTGGATGAGATGAGAAAGAAATCTGCTGAGGATGGGCTTCAATCTACTGGAGAAGGGCTGGAATG GGGTGTGCTTTTTGGGTTTGGGCCTGGGCTCACTGTTGAGACTGTGGTGCTCCACAGCGTGGCTCCAACAATCTAG
AA sequence Show only first row Show all	>Potri.003G176900.1 pacid=42784864 polypeptide=Potri.003G176900.1.p locus=Potri.003G176900 ID=Potri.003G176900.1.v4.1 annot-version=v4.1 MVTVDEIRKSQRAEGPATIMAIGTSTPPNCVDQSTYPEYYFRITNSEHKAELKEKFKRMCEKSMIKKRYMYLTEEILKENPSVCEYMAPSLDARQDMVVV EVPKLGKEAATKAIKEWGQPKSKITHLVFCTTSGVDMPGADYQLTKLLGLRSSVKRFMMYQQGCFAGGTVLRLAKDLAENNKGARVLVVCSEITAVTFRG PSDTHLDSLVGQALFGDGAAALVIGSDPVIGVEKPLFELVSAAQTILPDSDGAIDGHLREVGLTFHLLKDVPGLISKNVEKSLTEAFKPLGISDWNSLFW IAHPGGPAILDQVEAKLALKPEKLRATRHVLSEYGNMSSACVLFILDEMRKKSAEDGLQSTGEGLEWGVLFGFGPGLTVETVVLHSVAPTI

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G13930		ATCHS, TT4, CHS	TRANSPARENT TESTA 4, CHALCONE ...		Potri.003G176900 [exp]	0	1	CHS6,Pt-CHS.4
AT3G51240		TT6, F3'H, F3H	TRANSPARENT TESTA 6, flavanone...		Potri.005G113900 [exp]	2.44	0.9711
AT5G13930		ATCHS, TT4, CHS	TRANSPARENT TESTA 4, CHALCONE ...		Potri.001G051500 [exp]	2.44	0.9647	Pt-CHS.6,CHS2
AT3G51240		TT6, F3'H, F3H	TRANSPARENT TESTA 6, flavanone...		Potri.005G113700 [exp]	3.46	0.9540
AT1G12910		LWD1, ATAN11	LIGHT-REGULATED WD 1, ANTHOCYA...		Potri.006G209000 [exp]	3.87	0.9474
AT5G13930		ATCHS, TT4, CHS	TRANSPARENT TESTA 4, CHALCONE ...		Potri.001G051600 [exp]	4.00	0.9299	Pt-CHS.2,CHS3
AT5G13930		ATCHS, TT4, CHS	TRANSPARENT TESTA 4, CHALCONE ...		Potri.014G145100 [exp]	4.89	0.9412	Pt-CHS.7
AT1G75290			NAD(P)-binding Rossmann-fold s...		Potri.015G050200 [exp]	7.00	0.9322
AT5G14700			NAD(P)-binding Rossmann-fold s...		Potri.004G105000 [exp]	7.93	0.9263
AT1G75290			NAD(P)-binding Rossmann-fold s...		Potri.010G129800 [exp]	8.71	0.8392
AT3G24750			unknown protein		Potri.002G240300 [exp]	9.16	0.8310

Compare expression of checked genes

Potri.003G176900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.