Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G04780 860 / 0 Ankyrin repeat family protein (.1) AT3G24210 738 / 0 Ankyrin repeat family protein (.1) AT3G04470 626 / 0 Ankyrin repeat family protein (.1) AT1G62050 449 / 1e-150 Ankyrin repeat family protein (.1) AT1G11740 325 / 4e-102 ankyrin repeat family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G051400 [exp] 1144 / 0 AT1G04780 907 / 0.0 Ankyrin repeat family protein (.1) Potri.013G047500 [exp] 660 / 0 AT3G04470 881 / 0.0 Ankyrin repeat family protein (.1) Potri.019G019700 [exp] 658 / 0 AT3G04470 883 / 0.0 Ankyrin repeat family protein (.1) Potri.004G013500 [exp] 336 / 4e-107 AT1G62050 558 / 0.0 Ankyrin repeat family protein (.1) Potri.011G004500 [exp] 327 / 2e-103 AT1G62050 588 / 0.0 Ankyrin repeat family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000752 [exp] 971 / 0 AT1G04780 863 / 0.0 Ankyrin repeat family protein (.1) Lus10011743 [exp] 961 / 0 AT1G04780 852 / 0.0 Ankyrin repeat family protein (.1) Lus10008195 [exp] 635 / 0 AT3G04470 878 / 0.0 Ankyrin repeat family protein (.1) Lus10029612 [exp] 612 / 0 AT3G04470 857 / 0.0 Ankyrin repeat family protein (.1) Lus10032775 [exp] 366 / 2e-118 AT3G04470 698 / 0.0 Ankyrin repeat family protein (.1) Lus10002942 [exp] 332 / 9e-106 AT1G62050 707 / 0.0 Ankyrin repeat family protein (.1) Lus10027961 [exp] 320 / 1e-105 AT3G04470 409 / 3e-141 Ankyrin repeat family protein (.1) Lus10027960 [exp] 290 / 2e-91 AT3G04470 412 / 3e-139 Ankyrin repeat family protein (.1) Lus10003524 [exp] 221 / 3e-65 AT1G62050 531 / 0.0 Ankyrin repeat family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF11904 [poplar] [flax] GPCR_chapero_1 GPCR-chaperone
Representative CDS sequence Show only first row Show all	>Potri.003G177000.1 pacid=42785861 polypeptide=Potri.003G177000.1.p locus=Potri.003G177000 ID=Potri.003G177000.1.v4.1 annot-version=v4.1 ATGGCGGGCATTGACATTTCAAAATATGCCCACAGTCCTGTGCATAAGGCCATTGCAACAAAAAATTATGCCACTCTCAGGAAGATAGTAGCTGGCCTTC CCCGTCTATGCAATCCAGCTGAGATTCGGACTGAGGCAATTTCATTGGCCGAGGAAGAGAAGGCTGAAGCTATTGCTGCTGCAATTGATAGGCGTGATGT ACCAAACCGTGACACTCCTCTTCACTTGGCTGTCAAATTGGGTGATGAGACTGCAACTGAGATGCTCATGGTTGCCGGTGCAGATTGGAGTCTGCAGAAC GAGCAGGGATGGAGTGCTCTACAAGAAGCCATCTGCAATAAAGAAGAAGGGATTGCGATGATTATTGTCAGGCATTACCAGCCGTTGGCATGGGCAAAGT GGTGTAGGAGGTTGCCTCGTCTGGTAGGAACAATGCGAAGGATGAGGGACTTCTACATGGAAATAACATTCCATTTTGAGAGTTCTGTGATACCCTTCAT CTCGAGGATTGCTCCTTCAGATACTTACAAAATTTGGAAGAGGGGTGCAAATTTGAGGGCAGATATGACCATGGCTGGTTTCGATGGTTTTAGGATTCAG CGTTCAGATCAGAGTATTCTTTTCCTCGGTGATGGATCTGAGGATGGGAAAGTCCCTTCTGGATCGCTTTGTATGATCACACACAAGGATAAAGAGGTGA TGAATGCTTTGGATGGTGCTGGTTCTCCTGCAACTGACGAAGAGGTTCGGCAAGAAGTGGCTGCAATGTCTCAGACTAATATATTCAGGCCAGGGATTGA TGTGACCCAAGCAGTTCTTTTGCCACAGCTGACTTGGAGGCGGCAGGAGAAAACGGAAATGGTGGGTTCATGGAAGGCAAAGGTCTATGACATGCACAAT GTGGTTGTTAGCATCAAATCTAGAAAGGTCCCAGGGGCTCTGTCAGATGATGAGTTCTTCTCATCTTCCAATGACAATGAAACAGAAAGTGAGGAACTCG ATGACATTTTGACAGTAGAAGAAAGAAGGCAACTGGAAGTTGCACTTAAATTGGATGCGTCGGAACTGAACTATGAGAATGGTGAGAATGGTGATGGGAT TATTGCACATCGTCATAGTTGTTATGAGCACAGGGAGATTCCTATTGAAGATGCAAATGGTATTATAAATGGAGAGACTAAGCAGGAAAAGAAAGGGTGG TTTGGTGGTTGGAGGAAACGAGATTCTAAAGTTGAAGGGCAGAAGAAAATTGTTCCGCCAAGAAGTTCTCTTTGTGTGGATGAGAAGGTGAGTGATTTGC TAGGGGACTCTCCTTCTGGAAGTCAGCCTAAACCAGGAAGACATTCTGTGGAGATTGTTTTGAGGGATGAGCACCGGAAAGAGAGAGATAGCAAGGCATC TACTTCTGTGAGTTCTGAGAGCAATAATCGTCGCAAGGAAGGAAGCCGCGAGAATGAATATAAGAAAGGATTAAGACCTACTCTTTGGCTTTCTCCAGAC TTCCCTTTGCAAACTGAAGAACTTCTTCCACTGCTTGACATTCTTGCAAACAAGGTTAAGGCAATTCGTCGCTTAAGAGAGCTGCTGACAACTAAACTTC CTATGGGAACCTTTCCAGTTAAGGTTGCCATTCCAGTAGTTCCCACCATCAGGGTACTGGTTACATTTACAAAGTTTGAAGAACTACAGCCACTGGATGA ATTCTCAACACCGCCTTCAAGTCCTACGGCTGCGGGACGGGAAAGTCCATTGGTCACGCAGTCCTCAACATCATCTTGGTTTCAGTGGATAAAAGCCCCT TACCAACGCCCTGGCTCGTCTGCTGGTGGCTCTAGCAGTAGGATAGAAAACATTCAGGACCCATTTGCTATTCCTTCAGAGTATACCTGGGTTACAGCTG AAGCGAAGAAAAAGAAGATGCAGGAGAAGAACAAATCAAAGAAAGCAAAAAATCATGGTCATTAA
AA sequence Show only first row Show all	>Potri.003G177000.1 pacid=42785861 polypeptide=Potri.003G177000.1.p locus=Potri.003G177000 ID=Potri.003G177000.1.v4.1 annot-version=v4.1 MAGIDISKYAHSPVHKAIATKNYATLRKIVAGLPRLCNPAEIRTEAISLAEEEKAEAIAAAIDRRDVPNRDTPLHLAVKLGDETATEMLMVAGADWSLQN EQGWSALQEAICNKEEGIAMIIVRHYQPLAWAKWCRRLPRLVGTMRRMRDFYMEITFHFESSVIPFISRIAPSDTYKIWKRGANLRADMTMAGFDGFRIQ RSDQSILFLGDGSEDGKVPSGSLCMITHKDKEVMNALDGAGSPATDEEVRQEVAAMSQTNIFRPGIDVTQAVLLPQLTWRRQEKTEMVGSWKAKVYDMHN VVVSIKSRKVPGALSDDEFFSSSNDNETESEELDDILTVEERRQLEVALKLDASELNYENGENGDGIIAHRHSCYEHREIPIEDANGIINGETKQEKKGW FGGWRKRDSKVEGQKKIVPPRSSLCVDEKVSDLLGDSPSGSQPKPGRHSVEIVLRDEHRKERDSKASTSVSSESNNRRKEGSRENEYKKGLRPTLWLSPD FPLQTEELLPLLDILANKVKAIRRLRELLTTKLPMGTFPVKVAIPVVPTIRVLVTFTKFEELQPLDEFSTPPSSPTAAGRESPLVTQSSTSSWFQWIKAP YQRPGSSAGGSSSRIENIQDPFAIPSEYTWVTAEAKKKKMQEKNKSKKAKNHGH

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G04780			Ankyrin repeat family protein ...		Potri.003G177000 [exp]	0	1
AT4G23860			PHD finger protein-related (.1...		Potri.003G140000 [exp]	2.82	0.8005
					Potri.005G081700 [exp]	3.46	0.7661
AT3G04470			Ankyrin repeat family protein ...		Potri.013G047500 [exp]	11.61	0.7632
AT4G25500		ATRSP40, AT-SRP...	ARABIDOPSIS THALIANA ARGININE/...		Potri.012G133600 [exp]	18.33	0.6933
AT2G35030			Pentatricopeptide repeat (PPR)...		Potri.016G038400 [exp]	20.49	0.7082
AT4G02425			unknown protein		Potri.014G129500 [exp]	21.21	0.7383
AT2G26280		CID7	CTC-interacting domain 7 (.1)		Potri.018G047700 [exp]	24.97	0.7014
AT2G26710		CYP72B1, CYP734...	PHYB ACTIVATION TAGGED SUPPRES...		Potri.010G139300 [exp]	25.21	0.7762
AT5G54470	CO		B-box type zinc finger family ...		Potri.001G414700 [exp]	32.61	0.7277
AT4G21660			proline-rich spliceosome-assoc...		Potri.004G039000 [exp]	32.77	0.7592

Compare expression of checked genes

Potri.003G177000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.