Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	SAR1.5
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G04750 389 / 1e-139 ATVAMP7B, ATVAMP721, VAMP7B VESICLE-ASSOCIATED MEMBRANE PROTEIN 7B, vesicle-associated membrane protein 721 (.1.2) AT1G04760 385 / 5e-138 ATVAMP726 vesicle-associated membrane protein 726 (.1) AT2G32670 386 / 3e-137 ATVAMP725 vesicle-associated membrane protein 725 (.1) AT2G33120 383 / 3e-137 ATVAMP722, SAR1 ARABIDOPSIS THALIANA VESICLE-ASSOCIATED MEMBRANE PROTEIN 722, synaptobrevin-related protein 1 (.1.2.3) AT4G15780 320 / 3e-112 ATVAMP724 vesicle-associated membrane protein 724 (.1) AT2G33110 301 / 1e-104 ATVAMP723 vesicle-associated membrane protein 723 (.1) AT3G54300 280 / 5e-96 ATVAMP727 vesicle-associated membrane protein 727 (.1.2) AT5G11150 160 / 3e-49 ATVAMP713 vesicle-associated membrane protein 713 (.1) AT4G32150 156 / 9e-48 ATVAMP711, VAMP7C vesicle-associated membrane protein 711 (.1) AT5G22360 149 / 1e-44 ATVAMP714 vesicle-associated membrane protein 714 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G050400 [exp] 394 / 2e-141 AT2G33120 365 / 4e-130 ARABIDOPSIS THALIANA VESICLE-ASSOCIATED MEMBRANE PROTEIN 722, synaptobrevin-related protein 1 (.1.2.3) Potri.015G118300 [exp] 363 / 2e-129 AT2G33120 359 / 8e-128 ARABIDOPSIS THALIANA VESICLE-ASSOCIATED MEMBRANE PROTEIN 722, synaptobrevin-related protein 1 (.1.2.3) Potri.002G240900 [exp] 363 / 3e-129 AT2G33120 355 / 3e-126 ARABIDOPSIS THALIANA VESICLE-ASSOCIATED MEMBRANE PROTEIN 722, synaptobrevin-related protein 1 (.1.2.3) Potri.012G119600 [exp] 359 / 8e-128 AT2G33120 363 / 2e-129 ARABIDOPSIS THALIANA VESICLE-ASSOCIATED MEMBRANE PROTEIN 722, synaptobrevin-related protein 1 (.1.2.3) Potri.008G209100 [exp] 309 / 6e-108 AT4G15780 367 / 9e-131 vesicle-associated membrane protein 724 (.1) Potri.010G239900 [exp] 278 / 2e-95 AT3G54300 387 / 6e-138 vesicle-associated membrane protein 727 (.1.2) Potri.008G019400 [exp] 276 / 7e-95 AT3G54300 407 / 3e-146 vesicle-associated membrane protein 727 (.1.2) Potri.018G025800 [exp] 156 / 1e-47 AT4G32150 366 / 2e-130 vesicle-associated membrane protein 711 (.1) Potri.009G018900 [exp] 152 / 6e-46 AT5G22360 367 / 6e-131 vesicle-associated membrane protein 714 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022804 [exp] 383 / 6e-137 AT1G04760 377 / 1e-134 vesicle-associated membrane protein 726 (.1) Lus10038166 [exp] 380 / 6e-136 AT1G04760 383 / 3e-137 vesicle-associated membrane protein 726 (.1) Lus10011870 [exp] 379 / 2e-135 AT1G04760 376 / 3e-134 vesicle-associated membrane protein 726 (.1) Lus10025933 [exp] 376 / 2e-134 AT1G04760 381 / 2e-136 vesicle-associated membrane protein 726 (.1) Lus10040611 [exp] 365 / 6e-130 AT1G04760 369 / 1e-131 vesicle-associated membrane protein 726 (.1) Lus10018296 [exp] 362 / 8e-129 AT1G04760 366 / 2e-130 vesicle-associated membrane protein 726 (.1) Lus10036203 [exp] 361 / 3e-128 AT1G04760 367 / 1e-130 vesicle-associated membrane protein 726 (.1) Lus10000754 [exp] 360 / 3e-128 AT1G04760 372 / 8e-133 vesicle-associated membrane protein 726 (.1) Lus10038342 [exp] 360 / 6e-128 AT1G04760 366 / 3e-130 vesicle-associated membrane protein 726 (.1) Lus10011737 [exp] 311 / 5e-109 AT1G04760 324 / 4e-114 vesicle-associated membrane protein 726 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0445 [poplar] [flax] SNARE-fusion PF00957 [poplar] [flax] Synaptobrevin Synaptobrevin CL0431 [poplar] [flax] PF PF13774 [poplar] [flax] Longin Regulated-SNARE-like domain
Representative CDS sequence Show only first row Show all	>Potri.003G177700.1 pacid=42787240 polypeptide=Potri.003G177700.1.p locus=Potri.003G177700 ID=Potri.003G177700.1.v4.1 annot-version=v4.1 ATGGGGCAACAATCATTGATCTATAGCTTTGTGGCAAGAGGAACTGTGATTCTTGCGGAGTACACGGAGTTTAAAGGCAATTTCACTGGCATCGCTGCAC AATGTCTTCAAAAACTTCCCGCTTCCAATAACAAGTTTACTTATAATTGCGATGGCCATACCTTCAATTACCTCGTTGAAGATGGATTCACCTACTGCGT GGTTGCAGTTGAATCCGCTGGCAGACAAATCCCAATTGCCTTTTTGGAGCGAGTTAAGGAAGATTTTAACAAAAGATATGGTGGAGGAAAAGCAGCAACG GCTGTTGCCAATAGCCTGAACAGAGAGTTTGGGTCCAAGTTGAAGGAGCACATGCAGTATTGTGTGGATCATCCTGAAGAGATCAGCAAGCTTGCAAAAG TTAAGGCTCAGGTTTCTGAAGTTAAGGGTGTTATGATGGAAAACATTGAGAAGGTTCTTGATCGTGGAGAGAAGATTGAGCTGCTGGTGGATAAAACTGA GAACCTTCGCTCACAGGCACAAGATTTCCGACAACAGGGAACTAAGATGAGAAGAAAGATGTGGATTCAGAATATGAAGATGAAATTGATTGTTTTGGGT ATTATCATTGCCTTGATTCTCATCATAGTGTTATCCGTGTGCCATGGCTTCAATTGTTAA
AA sequence Show only first row Show all	>Potri.003G177700.1 pacid=42787240 polypeptide=Potri.003G177700.1.p locus=Potri.003G177700 ID=Potri.003G177700.1.v4.1 annot-version=v4.1 MGQQSLIYSFVARGTVILAEYTEFKGNFTGIAAQCLQKLPASNNKFTYNCDGHTFNYLVEDGFTYCVVAVESAGRQIPIAFLERVKEDFNKRYGGGKAAT AVANSLNREFGSKLKEHMQYCVDHPEEISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLRSQAQDFRQQGTKMRRKMWIQNMKMKLIVLG IIIALILIIVLSVCHGFNC

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G04750		ATVAMP7B, ATVAM...	VESICLE-ASSOCIATED MEMBRANE PR...		Potri.003G177700 [exp]	0	1	SAR1.5
AT1G16860			Ubiquitin-specific protease fa...		Potri.010G252500 [exp]	2.00	0.9634
AT2G37090		IRX9	IRREGULAR XYLEM 9, Nucleotide-...		Potri.016G086400 [exp]	2.23	0.9489
AT5G17770		CBR1, ATCBR	NADH:cytochrome B5 reductase 1...		Potri.013G067300 [exp]	2.44	0.9537
AT2G35120			Single hybrid motif superfamil...		Potri.012G123700 [exp]	3.46	0.9495	gdcH1
AT3G61750			Cytochrome b561/ferric reducta...		Potri.014G098700 [exp]	3.87	0.9502
AT5G54240			Protein of unknown function (D...		Potri.011G126300 [exp]	5.47	0.9472
AT2G37585			Core-2/I-branching beta-1,6-N-...		Potri.006G263000 [exp]	6.92	0.9342
AT4G10955			alpha/beta-Hydrolases superfam...		Potri.003G141100 [exp]	7.34	0.9418
AT4G27435			Protein of unknown function (D...		Potri.011G122700 [exp]	8.36	0.9436
AT2G03480		QUL2	QUASIMODO2 LIKE 2 (.1.2)		Potri.008G094800 [exp]	10.81	0.9366

Compare expression of checked genes

Potri.003G177700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.