Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	ATCSLD1.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G33100 1569 / 0 ATCSLD1 CELLULOSE-SYNTHASE LIKE D1, cellulose synthase-like D1 (.1) AT3G03050 1326 / 0 RHD7, ATCSLD3, KJK, CSLD3 ROOT HAIR DEFECTIVE 7, KOJAK, CELLULOSE SYNTHASE LIKE D3, cellulose synthase-like D3 (.1) AT4G38190 1321 / 0 ATCSLD4 ARABIDOPSIS THALIANA CELLULOSE SYNTHASE-LIKE D4, cellulose synthase like D4 (.1) AT5G16910 1311 / 0 ATCSLD2 cellulose-synthase like D2 (.1) AT1G02730 1187 / 0 SOS6, ATCSLD5 SALT OVERLY SENSITIVE 6, CELLULOSE SYNTHASE LIKE D5, cellulose synthase-like D5 (.1) AT1G32180 1075 / 0 ATCSLD6 CELLULOSE SYNTHASE LIKE D6, cellulose synthase-like D6 (.1) AT5G17420 788 / 0 ATCESA7, MUR10, IRX3 MURUS 10, IRREGULAR XYLEM 3, CELLULOSE SYNTHASE CATALYTIC SUBUNIT 7, Cellulose synthase family protein (.1) AT5G05170 783 / 0 IXR1, CEV1, ATH-B, ATCESA3, CESA3 ISOXABEN RESISTANT 1, CONSTITUTIVE EXPRESSION OF VSP 1, CELLULOSE SYNTHASE 3, Cellulose synthase family protein (.1) AT2G25540 773 / 0 CESA10 cellulose synthase 10 (.1) AT5G64740 761 / 0 PRC1, IXR2, E112, CESA6 PROCUSTE 1, ISOXABEN RESISTANT 2, cellulose synthase 6 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G050200 [exp] 1795 / 0 AT2G33100 1576 / 0.0 CELLULOSE-SYNTHASE LIKE D1, cellulose synthase-like D1 (.1) Potri.019G049700 [exp] 1340 / 0 AT3G03050 2020 / 0.0 ROOT HAIR DEFECTIVE 7, KOJAK, CELLULOSE SYNTHASE LIKE D3, cellulose synthase-like D3 (.1) Potri.009G170000 [exp] 1339 / 0 AT4G38190 1873 / 0.0 ARABIDOPSIS THALIANA CELLULOSE SYNTHASE-LIKE D4, cellulose synthase like D4 (.1) Potri.013G082200 [exp] 1330 / 0 AT3G03050 1987 / 0.0 ROOT HAIR DEFECTIVE 7, KOJAK, CELLULOSE SYNTHASE LIKE D3, cellulose synthase-like D3 (.1) Potri.004G208800 [exp] 1330 / 0 AT4G38190 1835 / 0.0 ARABIDOPSIS THALIANA CELLULOSE SYNTHASE-LIKE D4, cellulose synthase like D4 (.1) Potri.003G097100 [exp] 1211 / 0 AT3G03050 1610 / 0.0 ROOT HAIR DEFECTIVE 7, KOJAK, CELLULOSE SYNTHASE LIKE D3, cellulose synthase-like D3 (.1) Potri.001G136200 [exp] 1202 / 0 AT3G03050 1640 / 0.0 ROOT HAIR DEFECTIVE 7, KOJAK, CELLULOSE SYNTHASE LIKE D3, cellulose synthase-like D3 (.1) Potri.014G125100 [exp] 1184 / 0 AT1G02730 1820 / 0.0 SALT OVERLY SENSITIVE 6, CELLULOSE SYNTHASE LIKE D5, cellulose synthase-like D5 (.1) Potri.002G200300 [exp] 1174 / 0 AT1G02730 1813 / 0.0 SALT OVERLY SENSITIVE 6, CELLULOSE SYNTHASE LIKE D5, cellulose synthase-like D5 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000755 [exp] 1489 / 0 AT2G33100 1590 / 0.0 CELLULOSE-SYNTHASE LIKE D1, cellulose synthase-like D1 (.1) Lus10011736 [exp] 1407 / 0 AT2G33100 1508 / 0.0 CELLULOSE-SYNTHASE LIKE D1, cellulose synthase-like D1 (.1) Lus10009248 [exp] 1316 / 0 AT3G03050 1929 / 0.0 ROOT HAIR DEFECTIVE 7, KOJAK, CELLULOSE SYNTHASE LIKE D3, cellulose synthase-like D3 (.1) Lus10013851 [exp] 1297 / 0 AT4G38190 1876 / 0.0 ARABIDOPSIS THALIANA CELLULOSE SYNTHASE-LIKE D4, cellulose synthase like D4 (.1) Lus10026568 [exp] 1267 / 0 AT4G38190 1868 / 0.0 ARABIDOPSIS THALIANA CELLULOSE SYNTHASE-LIKE D4, cellulose synthase like D4 (.1) Lus10022982 [exp] 1259 / 0 AT4G38190 1823 / 0.0 ARABIDOPSIS THALIANA CELLULOSE SYNTHASE-LIKE D4, cellulose synthase like D4 (.1) Lus10030453 [exp] 1216 / 0 AT3G03050 1584 / 0.0 ROOT HAIR DEFECTIVE 7, KOJAK, CELLULOSE SYNTHASE LIKE D3, cellulose synthase-like D3 (.1) Lus10038008 [exp] 1189 / 0 AT3G03050 1818 / 0.0 ROOT HAIR DEFECTIVE 7, KOJAK, CELLULOSE SYNTHASE LIKE D3, cellulose synthase-like D3 (.1) Lus10010024 [exp] 1180 / 0 AT1G02730 1806 / 0.0 SALT OVERLY SENSITIVE 6, CELLULOSE SYNTHASE LIKE D5, cellulose synthase-like D5 (.1) Lus10002134 [exp] 1145 / 0 AT3G03050 1473 / 0.0 ROOT HAIR DEFECTIVE 7, KOJAK, CELLULOSE SYNTHASE LIKE D3, cellulose synthase-like D3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [poplar] [flax] GT-A PF13632 [poplar] [flax] Glyco_trans_2_3 Glycosyl transferase family group 2
Representative CDS sequence Show only first row Show all	>Potri.003G177800.1 pacid=42786009 polypeptide=Potri.003G177800.1.p locus=Potri.003G177800 ID=Potri.003G177800.1.v4.1 annot-version=v4.1 ATGCGCATGGCAACCTCATCAAAACCAAAAGGGAAGACTTTGTCATCACAAGCATCAAGTGCTGCTCGTCCACAACAGGCTGTGAAATTTGCACGCCGGA CATCTAGTGGACGCATTGATAGCTTTTCACAAGATGACGATATGGACTTGTCAGGTGAATATTCAGGACAGAGTGACTATATCAATTACACTGTTGTCAT GCCCCCTACCCCTGATAACCAGCCTGCACACCCGTCCTCAGAGAATAAATCTGATGGGACGAAGAGCCGCCTTGGTTCTGAGGCACAGCATCGGTCCAGG CAGGTAGGAGCGCGAGAAGATGGTTACGGAAGCCATGGTGGCAGCAATGGCGGTGTAAAAATGGAACGAGGAATGTCAATAATGAAATCAAATAATAAAT CAATGTTGTTGAGGAGTCAAACTGGAGATTTTGATCACAACAGGTGGTTGTTTGAGACAAAAGGAACTTATGGTGTTGGAAATGCATATTGGTCAGAAGG AGACAATTATGGTCAGGATACGGAGCTGAGTATGTCCGATTTTTTGGACAAGCCTTGGAAGCCACTCACTAGGAAGATTAAGGTTCCTGCAGCTATTCTC AGCCCTTACAGGATACTTATAGTGATCCGTTTGATAGTTCTGTTTTTCTTCCTAAAGTGGAGAGTTCAGAACCCCAATCCTGATGCAACGTGGCTGTGGG GGATGTCTATTGTTTGTGAGATTTGGTTTGCAATCTCATGGATACTAGACATTTTCCCTAAGTTTAACCCCATCAACCGATCCACTGACCTTGCTGCTCT GCGTGACAAGTTTGAGAAGCCCTCCCCTGCAAATCCTCATGGCCGGTCAGACCTCCCAGGAGTTGATATTTTTGTCTCCACGGCCGATCCTGAGAAGGAA CCTCCCCTTGTCACATCCAACACAATTTTATCGATTCTTGCAGCTGACTACCCTGTTGAGAAACTCTCCTGCTACATTTCTGATGATGGTGGTGCCATAC TCACCTTCGAGGCTATGGCTGAAGCTGTTCGATATGCTGAGGTTTGGGTACCGTTTTGTCGAAAACACGACATTGAGCTGAGGAATCCGGATAGTTACTT CAGCCTAAAAACTGACCCCACCAAAAACAAGAAACGGCCTGATTTTGTCAAGGACCGCCGTTGGATGAAGAGAGAGTATGATGAGTTCAAGGTCAGGATC AATGGTCTGCCTGAAGCAATACGAAGGAGAAGCAAATCATTAAACTCTAAGGAGATGAAGAAGGCTAAAAGTCTAGCCGGGGAAAAGAATGGTGGTTCCT TGCCACCAGAGGGGGTCGATGTCCCCAAAGCTACATGGATGGCTGATGGTACCCCTTGGCCTGGCACATGGCTGAATCCAACAGATGATCACAAAAAGGG GGACCATGCTGGAATCTTGCAGGTAATGAGTAAGGTCCCAGCAAATGATCCAGTGATGGGCCATCCAGATGAGAAAAAATTAGATTTCACTGGAGTTGAC GTTAGGATACCAATGTTTGCATATGTATCACGTGAAAAGAGGCCTGGCTTTGACCACAACAAGAAGGCTGGAGCCATGAACGCGTTGGTTAGAGCTTCAG CTATATTGTCCAATGGACCATTCATACTCAATCTGGACTGTGATCATTACTTCTATAATTGTCAAGCTATAAGGGAGGGAATGTGCTTTATGATGGACCG TGGTGGTGACCGCATATGCTACATCCAGTTTCCACAAAGATTTGAAGGGATCGACCCGTCTGATCGATATGCAAATCACAACACCGTCTTCTTTGATGGA AGTATGCGAGCACTGGATGGTCTTCAAGGTCCTGTGTATGTAGGAACAGGGTGCATGTTTCGTAGACATGCACTATATGGGTTCCTTCCACCAAGGGCAA ACGAGTACTTGGGCATGTTCGGCAGTACGAAAAAAAGGGCTCCAGGTTTTAAGGTTCAATTAGAAGACGAGTCTGAGACTCAGTCCCTCACATCACACCC CGACTTGAACCTGCCAAGGAAGTTTGGTAATTCAGCCATGTTCAACGAGTCTATAGCTGTTGCTGAATACCAAGGACGGCCACTTGCTGATCACAAATCG GTAAAGAATGGCAGGCCTCCTGGTGCACTTCTCCTGCCACGTCCACCTCTAGATGCACCCACGGTTGCAGAGGCAATTGCTGTCATCTCTTGCTGGTATG AGGACAAGACTGAATGGGGGGACAAGATAGGTTGGATCTATGGCTCAGTCACAGAAGATGTGGTGACTGGTTATCGGATGCACAACCGTGGGTGGCGGTC TGTGTACTGTGTAACAAAGAGAGATGCCTTCCGTGGCACAGCACCAATCAACCTCACTGACCGCCTTCACCAGGTGCTACGATGGGCTACTGGTTCGGTC GAAATATTTTTCTCTAAAAACAATGCCTTCCTAGGAAGCCGGCGACTGAAGTTCTTACAGCGAATCGCTTACCTCAATGTTGGCATTTACCCCTTCACCT CCTTCTTCTTAGTCACTTACTGCTTCCTCCCTGCACTTTCCCTTTTCACAGGAACCTTCATTGTTCAAAGCCTTGATATAGCTTTCCTTTGTTACCTCTT AACCATCACTGTATCACTAACTCTCATCTCCCTTCTTGAAATAAAATGGTCCGGTATTGGGCTCGAGGAATTGTGGCGTAATGAGCAGTTTTGGCTCATT GGTGGCACTAGCGCTCACCTAGCTGCTGTGCTCCAAGGCCTTCTAAAAGTCACTGCTGGCATTGAGATTTCTTTCACGTTAACCTCCAAGTCTGCAGGTG AAGATGAAGACGATGTTTTTGCTGATCTTTACGAGGTCAAATGGACAAGTCTCTTCTTAGTGCCACTCACCATCCTAGTAGTCAACATTGTTGCCATAGT TATTGGATGCTCGAGGACATTATACAGTGTGATACCAGAATGGGGTAAGTTGATGGGAGGACTCTTTTTCAGCTTCTGGGTGCTGTCTCACATGTATCCA TTTGTGAAAGGTCTGTTGGGAAGGAGAGGAAGAGTGCCAACAATTGTATATGTCTGGTCAGGGCTGGTTGCAATTACTGTGTCCTTGCTTTGGATATCAA TCAGTAGTGAAAATCGTGGAAACCTTCAAGTGTAA
AA sequence Show only first row Show all	>Potri.003G177800.1 pacid=42786009 polypeptide=Potri.003G177800.1.p locus=Potri.003G177800 ID=Potri.003G177800.1.v4.1 annot-version=v4.1 MRMATSSKPKGKTLSSQASSAARPQQAVKFARRTSSGRIDSFSQDDDMDLSGEYSGQSDYINYTVVMPPTPDNQPAHPSSENKSDGTKSRLGSEAQHRSR QVGAREDGYGSHGGSNGGVKMERGMSIMKSNNKSMLLRSQTGDFDHNRWLFETKGTYGVGNAYWSEGDNYGQDTELSMSDFLDKPWKPLTRKIKVPAAIL SPYRILIVIRLIVLFFFLKWRVQNPNPDATWLWGMSIVCEIWFAISWILDIFPKFNPINRSTDLAALRDKFEKPSPANPHGRSDLPGVDIFVSTADPEKE PPLVTSNTILSILAADYPVEKLSCYISDDGGAILTFEAMAEAVRYAEVWVPFCRKHDIELRNPDSYFSLKTDPTKNKKRPDFVKDRRWMKREYDEFKVRI NGLPEAIRRRSKSLNSKEMKKAKSLAGEKNGGSLPPEGVDVPKATWMADGTPWPGTWLNPTDDHKKGDHAGILQVMSKVPANDPVMGHPDEKKLDFTGVD VRIPMFAYVSREKRPGFDHNKKAGAMNALVRASAILSNGPFILNLDCDHYFYNCQAIREGMCFMMDRGGDRICYIQFPQRFEGIDPSDRYANHNTVFFDG SMRALDGLQGPVYVGTGCMFRRHALYGFLPPRANEYLGMFGSTKKRAPGFKVQLEDESETQSLTSHPDLNLPRKFGNSAMFNESIAVAEYQGRPLADHKS VKNGRPPGALLLPRPPLDAPTVAEAIAVISCWYEDKTEWGDKIGWIYGSVTEDVVTGYRMHNRGWRSVYCVTKRDAFRGTAPINLTDRLHQVLRWATGSV EIFFSKNNAFLGSRRLKFLQRIAYLNVGIYPFTSFFLVTYCFLPALSLFTGTFIVQSLDIAFLCYLLTITVSLTLISLLEIKWSGIGLEELWRNEQFWLI GGTSAHLAAVLQGLLKVTAGIEISFTLTSKSAGEDEDDVFADLYEVKWTSLFLVPLTILVVNIVAIVIGCSRTLYSVIPEWGKLMGGLFFSFWVLSHMYP FVKGLLGRRGRVPTIVYVWSGLVAITVSLLWISISSENRGNLQV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G33100		ATCSLD1	CELLULOSE-SYNTHASE LIKE D1, ce...		Potri.003G177800 [exp]	0	1	ATCSLD1.1
					Potri.001G305200 [exp]	3.31	0.5902
AT1G13570			F-box/RNI-like superfamily pro...		Potri.017G092301 [exp]	13.11	0.6027
AT5G28780			PIF1 helicase (.1)		Potri.011G042150 [exp]	20.92	0.5905
AT5G26594		ARR24	response regulator 24 (.1)		Potri.019G024900 [exp]	24.16	0.5905
AT3G19280		FUCTA, FUCT1, A...	fucosyltransferase 11 (.1)		Potri.019G091200 [exp]	25.63	0.5905	FUCT3.1
AT5G11880			Pyridoxal-dependent decarboxyl...		Potri.002G015800 [exp]	27.45	0.5073
AT2G35615			Eukaryotic aspartyl protease f...		Potri.003G105300 [exp]	32.40	0.5619
AT1G77410		BGAL16	beta-galactosidase 16 (.1)		Potri.004G036000 [exp]	49.77	0.5266
					Potri.010G007833 [exp]	67.14	0.5134
AT5G47320		RPS19	ribosomal protein S19 (.1)		Potri.019G101950 [exp]	71.05	0.4952

Compare expression of checked genes

Potri.003G177800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.