Plant FIBer expression Database

Potri.003G177900 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G13690 106 / 3e-27 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10000756
[exp]
139 / 1e-39 AT4G13690 84 / 5e-19 unknown protein
PFAM info
Representative CDS sequence
>Potri.003G177900.2 pacid=42785597 polypeptide=Potri.003G177900.2.p locus=Potri.003G177900 ID=Potri.003G177900.2.v4.1 annot-version=v4.1
ATGCATTCAAAGCAAAATACAATTAGGGTTTTGGGTCAACGATCAATTCCTTCATCTTTCATCTTTCGCTCTTCAAATCCTAGCGCTAAAGATTCAAATC
AAGACGAGCAAAGAGAAGATTCAAAGAAGAGCCCCCGCATTTCTTTTTCTGATTTCCTTGACAAGAAGTTGCACAAAAGTTCTGTCCTACCCAAAACAGT
TAAGGGGAAGTCAAGGCCTTTCTGGACGCCGTTAGGTCCTCCTAGCAATGGTGGCGGGTTTACTGGTCACCAAATTGAGGTTCAAAAGGAAAAGGAAGAA
AGGAGTTCTGTTCTTGATGATGTGGTTTTTCAGCAGTTTAAGCCTACTAGAGTAGAAAAAGGAGATGATGTAATTTCGGTCGGTGATGGTGAAAAAGGAG
ATGGTATGGGTCCATTCAGTGAAAAACAAACTTCTAGCTCTTCATTTGGCTTAGGTTCATCTGGTGATTGTGATTTTGGAACCTCCACCACTTCATCTGT
TATAGGTTCAAGTCATGTTGGTAAAGTAGGAACCTCTACTGTAAATGATGTGCCAGGATCCAGAAAGAGGAACCTATTTGGAGGTGGTGGCCAGAACCAT
ACTGCACGAAAGCCTTCATTAGTTTTGGGAGTTCATCCAAGTCCCAATCAAAAAGGAAGAAAAGAAAGCTTCATTGGCAACAAAAAACAAAGGCCTCTCT
ACAATCATTATGCAAACGGTTCTGGCTGGTGGGACTGTGACATGGAAGGTGTCGACTCGGAGGAAGTAGGCTATGGTGAAATATGGGAAGGGGTAGGCTC
CACTACATTTGGAGGAATAGAATGGCATTAA
AA sequence
>Potri.003G177900.2 pacid=42785597 polypeptide=Potri.003G177900.2.p locus=Potri.003G177900 ID=Potri.003G177900.2.v4.1 annot-version=v4.1
MHSKQNTIRVLGQRSIPSSFIFRSSNPSAKDSNQDEQREDSKKSPRISFSDFLDKKLHKSSVLPKTVKGKSRPFWTPLGPPSNGGGFTGHQIEVQKEKEE
RSSVLDDVVFQQFKPTRVEKGDDVISVGDGEKGDGMGPFSEKQTSSSSFGLGSSGDCDFGTSTTSSVIGSSHVGKVGTSTVNDVPGSRKRNLFGGGGQNH
TARKPSLVLGVHPSPNQKGRKESFIGNKKQRPLYNHYANGSGWWDCDMEGVDSEEVGYGEIWEGVGSTTFGGIEWH

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT4G13690 unknown protein Potri.003G177900
[exp]
0 1
AT3G27060 ATTSO2, TSO2 TSO MEANING 'UGLY' IN CHINESE ... Potri.017G063900
[exp]
1.73 0.9121
AT2G38720 MAP65-5 microtubule-associated protein... Potri.003G192400
[exp]
3.87 0.8919
AT3G22780 CPP ATTSO1, TSO1 CHINESE FOR 'UGLY', Tesmin/TSO... Potri.006G251200
[exp]
4.69 0.9117 Pt-CPP1.22
AT1G54385 ARM repeat superfamily protein... Potri.013G058700
[exp]
9.16 0.8941
AT2G21790 ATRNR1, RNR1, C... CRINKLY LEAVES 8, RIBONUCLEOTI... Potri.005G087300
[exp]
9.16 0.8763
AT3G17030 Nucleic acid-binding proteins ... Potri.010G144400
[exp]
10.77 0.8303
AT5G62410 TTN3, ATSMC4, A... TITAN 3, structural maintenanc... Potri.003G108400
[exp]
11.22 0.8851 CPE902,Pt-SMC2.2
AT3G57060 binding (.1.2) Potri.006G041500
[exp]
11.22 0.9043
AT5G58320 Kinase interacting (KIP1-like)... Potri.019G061600
[exp]
14.83 0.8314
AT5G05510 Mad3/BUB1 homology region 1 (.... Potri.008G071900
[exp]
16.52 0.8661

Potri.003G177900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.