Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	GR.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G24170 848 / 0 ATGR1 glutathione-disulfide reductase (.1.2.3) AT3G54660 509 / 7e-177 ATGR2, EMB2360, GR glutathione reductase (.1) AT1G48030 190 / 2e-54 mtLPD1 mitochondrial lipoamide dehydrogenase 1 (.1.2) AT3G17240 187 / 5e-53 mtLPD2, LPD2 lipoamide dehydrogenase 2 (.1.2.3) AT3G16950 149 / 9e-39 PTLPD1, LPD1 lipoamide dehydrogenase 1 (.1.2) AT4G16155 142 / 2e-36 dihydrolipoyl dehydrogenases (.1) AT3G09940 71 / 4e-13 MDAR2, ATMDAR3, MDHAR MONODEHYDROASCORBATE REDUCTASE 2, ARABIDOPSIS THALIANA MONODEHYDROASCORBATE REDUCTASE 3, monodehydroascorbate reductase (.1.2) AT5G03630 54 / 1e-07 ATMDAR2 Pyridine nucleotide-disulphide oxidoreductase family protein (.1) AT2G41680 52 / 1e-06 NTRC NADPH-dependent thioredoxin reductase C (.1) AT1G63940 47 / 2e-05 MDAR6 monodehydroascorbate reductase 6 (.1.2.3.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G050000 [exp] 951 / 0 AT3G24170 857 / 0.0 glutathione-disulfide reductase (.1.2.3) Potri.015G037800 [exp] 520 / 0 AT3G54660 872 / 0.0 glutathione reductase (.1) Potri.008G100800 [exp] 179 / 2e-50 AT3G17240 868 / 0.0 lipoamide dehydrogenase 2 (.1.2.3) Potri.010G142100 [exp] 156 / 1e-41 AT3G16950 895 / 0.0 lipoamide dehydrogenase 1 (.1.2) Potri.008G107600 [exp] 153 / 2e-40 AT3G16950 877 / 0.0 lipoamide dehydrogenase 1 (.1.2) Potri.010G151400 [exp] 140 / 2e-36 AT3G17240 817 / 0.0 lipoamide dehydrogenase 2 (.1.2.3) Potri.001G099600 [exp] 56 / 6e-08 AT1G63940 793 / 0.0 monodehydroascorbate reductase 6 (.1.2.3.4) Potri.006G049100 [exp] 52 / 7e-07 AT2G41680 785 / 0.0 NADPH-dependent thioredoxin reductase C (.1) Potri.006G114800 [exp] 43 / 0.0005 AT3G52880 708 / 0.0 monodehydroascorbate reductase 1 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011734 [exp] 882 / 0 AT3G24170 863 / 0.0 glutathione-disulfide reductase (.1.2.3) Lus10000758 [exp] 793 / 0 AT3G24170 776 / 0.0 glutathione-disulfide reductase (.1.2.3) Lus10018770 [exp] 515 / 2e-179 AT3G54660 879 / 0.0 glutathione reductase (.1) Lus10024857 [exp] 499 / 1e-172 AT3G54660 864 / 0.0 glutathione reductase (.1) Lus10037825 [exp] 185 / 3e-52 AT1G48030 922 / 0.0 mitochondrial lipoamide dehydrogenase 1 (.1.2) Lus10017102 [exp] 184 / 4e-52 AT1G48030 918 / 0.0 mitochondrial lipoamide dehydrogenase 1 (.1.2) Lus10032649 [exp] 177 / 2e-49 AT1G48030 892 / 0.0 mitochondrial lipoamide dehydrogenase 1 (.1.2) Lus10043103 [exp] 175 / 1e-48 AT1G48030 889 / 0.0 mitochondrial lipoamide dehydrogenase 1 (.1.2) Lus10037741 [exp] 145 / 1e-37 AT3G16950 928 / 0.0 lipoamide dehydrogenase 1 (.1.2) Lus10016877 [exp] 143 / 1e-36 AT3G16950 920 / 0.0 lipoamide dehydrogenase 1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF00070 [poplar] [flax] Pyr_redox Pyridine nucleotide-disulphide oxidoreductase CL0608 [poplar] [flax] Reductase_C PF02852 [poplar] [flax] Pyr_redox_dim Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain
Representative CDS sequence Show only first row Show all	>Potri.003G178200.1 pacid=42784516 polypeptide=Potri.003G178200.1.p locus=Potri.003G178200 ID=Potri.003G178200.1.v4.1 annot-version=v4.1 ATGCCAAGAAAGATGCCTATCGATGGGGAAGTGAACCAAGCTAGCCAAGTAGAAGAAGATGCCCACTTTGATTTTGATCTGTTTGTTATTGGAGCTGGGA GTGGCGGTGTTCGTGCTGCTAGGTTTTCTGCTAATTATGGAGCTAAGGTTGGAATTTGTGAGCTTCCATTTCATCCTATCAGCTCAGAAGTAAATGGAGG GGTTGGTGGAACGTGTGTTCTTCGCGGTTGTGTTCCCAAGAAGATTTTAGTTTATGGAGCAAATTTTGGAGGTGAGATTGAGGACGCCAGGAATTATGGT TGGGAAATCAATGAAAAGGTGGACTTCAACTGGAAAAAACTGTTGCAGAAAAAGTCAGATGAAATAGTCAGGCTAAATGGAATTTACAAGAGGTTACTAT CTAATGCTGGGGTTAAACTGTATGAAGGAGAGGGAAAGGTTGCCGGTCCTAATGAAGTTGAACTGACACAACTAGATGGCACTAAATTGAAATACTCAGC AAAGCACATCCTGATTGCAACTGGCAGTAAGGCTCAGCGTCCCAATATTCCTGGGCAGGAGTTGGGCATAACTTCTGATGAGGCATTGAGTTTGGAAGAT TTACCAAAGCGTGCAGTAGTGCTTGGTGGAGGGTACATTGCTGTTGAGTTTGCTTCGATATGGCGTGGCATGGGTGCTACTGTGGATCTATTTCTCAGAA GGGAACTTCCGTTAAGGGGTTTTGATGATGAAATGAGGGCTGTGGTTGCAAGAAATCTTGAAGGCAGGGGAATTAATTTGCACCCCAGAACAAATTTGAC AGAGTTGACTAAAACAGAGGATGGAATTAAAGTTCGCACAGATCATGGAGAGGAGCTGTTGGCAGATGTTGTACTTTTTGCCACCGGTCGAGCTCCCAAT ACGAAGAGATTAAATTTGGAAGCTGCAGGCGTTGAGCTTGATAAAACAGGAGCTGTGAAGGTTGACGAGTTCTCTCGCACCAACATACCTAGCATATGGG CTGCTGGTGATGTCACAAACCGAATGAATCTTACTCCCGTGGCCTTGATGGAGGGGTCATGCTTTGCTAAAACTGTTTTCGCAGGGCAACCTACCAAACC AGACTACAATCACATACCATATGCTGTGTTTAGCATTCCTCCTCTCTCTGTAGTGGGCCTCAGCGAGGAGCAGGCATTAGACCAAGCAAATGGTGATGTG TTGGTTTTCACTTCTACCTTTAATCCTATGAAGAACACGATCTCTGGTCGACAAGAGAAGACAGTAATGAAGCTTGTTGTTGATGCTGAGACGGATAAAG TTCTTGGAGCTTCCATGTGTGGGCCAGATGCACCTGAAATTATGCAGGGTATTGCTGTTGCATTGAAGTGTGGAGCAACCAAGCAACAATTTGACAGTAC TGTGGGAATACACCCATCTGCTGCTGAGGAATTTGTGACCATGCGTTCAGTGGCAAGGCGTGTTACTGCAAGTGGCAAACCGAAGACAAATCTGTAA
AA sequence Show only first row Show all	>Potri.003G178200.1 pacid=42784516 polypeptide=Potri.003G178200.1.p locus=Potri.003G178200 ID=Potri.003G178200.1.v4.1 annot-version=v4.1 MPRKMPIDGEVNQASQVEEDAHFDFDLFVIGAGSGGVRAARFSANYGAKVGICELPFHPISSEVNGGVGGTCVLRGCVPKKILVYGANFGGEIEDARNYG WEINEKVDFNWKKLLQKKSDEIVRLNGIYKRLLSNAGVKLYEGEGKVAGPNEVELTQLDGTKLKYSAKHILIATGSKAQRPNIPGQELGITSDEALSLED LPKRAVVLGGGYIAVEFASIWRGMGATVDLFLRRELPLRGFDDEMRAVVARNLEGRGINLHPRTNLTELTKTEDGIKVRTDHGEELLADVVLFATGRAPN TKRLNLEAAGVELDKTGAVKVDEFSRTNIPSIWAAGDVTNRMNLTPVALMEGSCFAKTVFAGQPTKPDYNHIPYAVFSIPPLSVVGLSEEQALDQANGDV LVFTSTFNPMKNTISGRQEKTVMKLVVDAETDKVLGASMCGPDAPEIMQGIAVALKCGATKQQFDSTVGIHPSAAEEFVTMRSVARRVTASGKPKTNL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G24170		ATGR1	glutathione-disulfide reductas...		Potri.003G178200 [exp]	0	1	GR.1
AT1G54570			Esterase/lipase/thioesterase f...		Potri.013G033000 [exp]	4.35	0.8951
AT1G03400			2-oxoglutarate (2OG) and Fe(II...		Potri.010G107500 [exp]	9.79	0.8896
					Potri.007G085550 [exp]	10.67	0.8636
AT5G14760		AO	L-aspartate oxidase (.1)		Potri.001G348600 [exp]	11.66	0.7897
AT5G47860			Protein of unknown function (D...		Potri.003G158400 [exp]	12.96	0.8792
					Potri.004G231576 [exp]	14.24	0.8634
AT3G28970		AAR3	antiauxin-resistant 3, Domain ...		Potri.017G084300 [exp]	15.58	0.8525
AT5G45890		SAG12	senescence-associated gene 12 ...		Potri.004G056200 [exp]	16.43	0.8525
AT3G53990			Adenine nucleotide alpha hydro...		Potri.016G104600 [exp]	16.58	0.8512
AT4G26910			Dihydrolipoamide succinyltrans...		Potri.001G357000 [exp]	16.88	0.8347

Compare expression of checked genes

Potri.003G178200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.