Plant FIBer expression Database

Pt-PMP.2 (Potri.003G178400) [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol Pt-PMP.2
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G24160 295 / 7e-98 PMP putative type 1 membrane protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G049800
[exp]
572 / 0 AT3G24160 304 / 2e-101 putative type 1 membrane protein (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10000760
[exp]
352 / 5e-120 AT3G24160 270 / 5e-88 putative type 1 membrane protein (.1)
PFAM info
Representative CDS sequence
>Potri.003G178400.1 pacid=42784779 polypeptide=Potri.003G178400.1.p locus=Potri.003G178400 ID=Potri.003G178400.1.v4.1 annot-version=v4.1
ATGGATTTCCAAATACGCAGCGTTTTGCCTCTGGTCATCATCTCCTCTCTTCTCTACTCACTAGCTAAGGCTGAGATTAGCGGTTCGGTTATTTTCATCG
ATAGCCAGACTCGTCAATATCTGCGCTCTCCATCACCAAATGATGTCGTCCAGTCTAACTCCATGTCGCTTCAAGAAGTTGGTGCTGCTGTGTCGGTCTT
GCTTGGTTTTGTGCCATCGGATGCACTCTCAGCTACTAGTTCATTGAAGTTGAATGAGGTTCTCTTGCCCAATCCGTTTAACAGGCCTCGTGCTGTTTTC
ATGCTGGAAGTCACTGGAGAGCTTCCGTCTGTGGCTGATCAAGCAAATGTAATGTTCAATGCTGCCTACAAGAGCAAGATTGTTCCTGGTTCAAATAAAG
CTGATATTCAACTTCCAGGCGAAGAGGTTTCAGTGGTTTCTCTAGATGAAGAATTTGTGGATTTCACTGACAAGGATATAAGTGATTTTGCATCTTGGTT
GGGTGGATCATATGCTGTTGATCCCTTGGAAGCACTGAAGGGAGAATTAGCAATCCCATTGGCTAGTGGTGCCACTATAGATCTTCATATGTCTAAGAAA
GCAAACAGGGAATTCATAGCAAGTCTTCTAGCTCTGCTCCGCAATAGTAGAAAAGCTGTTGAGATGCATGGAGATTTGTCACTGAGTAATCAACCACCTG
CAGAGTTATTGAAGGGCAGTTTTGATGGCCTTAAGGCTTTGCAGGAGCATTATGGACCCGAGGGTGCTGCACAGAAAGGGCTAGAGCTGTTAATTACTAT
GTTGTCCAAGATGTTTGATTCATTGCAAGCAGCTTACAAAGGTCAAATTGTTGGAGCAATCCTTTTTAATACAGCACCTGCACCAGAATCAAAAACATTG
CTGAATGTCATGTTGACTTCCCGGCCATCTGCACGTTGGTTGGAAGAAACAAAAGAGCCCACTATTGAAGCCATTGCAGTAGTGGCCTTGGTTAGAATAA
CCCTTGCTTGGATAACTGGAATTGTTCTTATCATTGCTACTCTTTTGGGGATCTACTTCCTCTTCAGCATGCCACTCACAAAGGACACCCTTTTGTATTC
CAACGTCAAGCTGGACTAA
AA sequence
>Potri.003G178400.1 pacid=42784779 polypeptide=Potri.003G178400.1.p locus=Potri.003G178400 ID=Potri.003G178400.1.v4.1 annot-version=v4.1
MDFQIRSVLPLVIISSLLYSLAKAEISGSVIFIDSQTRQYLRSPSPNDVVQSNSMSLQEVGAAVSVLLGFVPSDALSATSSLKLNEVLLPNPFNRPRAVF
MLEVTGELPSVADQANVMFNAAYKSKIVPGSNKADIQLPGEEVSVVSLDEEFVDFTDKDISDFASWLGGSYAVDPLEALKGELAIPLASGATIDLHMSKK
ANREFIASLLALLRNSRKAVEMHGDLSLSNQPPAELLKGSFDGLKALQEHYGPEGAAQKGLELLITMLSKMFDSLQAAYKGQIVGAILFNTAPAPESKTL
LNVMLTSRPSARWLEETKEPTIEAIAVVALVRITLAWITGIVLIIATLLGIYFLFSMPLTKDTLLYSNVKLD

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT3G24160 PMP putative type 1 membrane prote... Potri.003G178400
[exp]
0 1 Pt-PMP.2
AT5G53310 myosin heavy chain-related (.1... Potri.012G033100
[exp]
1.00 0.8685
AT1G09580 emp24/gp25L/p24 family/GOLD fa... Potri.003G019300
[exp]
2.44 0.8416
AT4G15470 Bax inhibitor-1 family protein... Potri.008G199200
[exp]
3.74 0.8593
AT2G02180 TOM3 tobamovirus multiplication pro... Potri.008G144400
[exp]
10.95 0.8418 Pt-TOM3.1
AT1G33230 TMPIT-like protein (.1) Potri.011G147500
[exp]
12.72 0.8572
AT4G23630 RTNLB1, BTI1 Reticulan like protein B1, VIR... Potri.003G133600
[exp]
13.49 0.7291
AT3G05010 Protein of unknown function, t... Potri.005G044700
[exp]
14.00 0.8154
AT2G15570 TRX-M3, GAT1, A... THIOREDOXIN-M3, GFP ARRESTED T... Potri.009G100700
[exp]
15.87 0.8117 ATHM3.1,PtrTrxm5
AT2G46170 Reticulon family protein (.1.2... Potri.014G091200
[exp]
16.12 0.8176
AT3G24315 ATSEC20 Sec20 family protein (.1) Potri.010G064900
[exp]
16.91 0.7460

Potri.003G178400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.