Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G32700 1051 / 0 MUM1, LUH MUCILAGE-MODIFIED 1, LEUNIG_homolog (.1.2.3.4.5.6.7) AT4G32551 494 / 2e-162 RON2, LUG ROTUNDA 2, LEUNIG, LisH dimerisation motif;WD40/YVTN repeat-like-containing domain (.1.2) AT2G41500 103 / 8e-23 EMB2776, LIS LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1) AT4G02730 91 / 1e-19 AtWDR5b human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) AT5G67320 90 / 3e-18 HOS15 high expression of osmotically responsive genes 15, WD-40 repeat family protein (.1) AT3G49660 84 / 2e-17 AtWDR5a human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) AT1G61210 84 / 3e-16 DWA3 DWD hypersensitive to ABA 3, Transducin/WD40 repeat-like superfamily protein (.1.2) AT1G11160 84 / 3e-16 Transducin/WD40 repeat-like superfamily protein (.1) AT5G25150 78 / 1e-14 TAF5 TBP-associated factor 5 (.1) AT5G13480 78 / 1e-14 FY Transducin/WD40 repeat-like superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G049400 [exp] 1320 / 0 AT2G32700 1057 / 0.0 MUCILAGE-MODIFIED 1, LEUNIG_homolog (.1.2.3.4.5.6.7) Potri.002G241800 [exp] 919 / 0 AT2G32700 899 / 0.0 MUCILAGE-MODIFIED 1, LEUNIG_homolog (.1.2.3.4.5.6.7) Potri.018G033300 [exp] 486 / 1e-158 AT4G32551 657 / 0.0 ROTUNDA 2, LEUNIG, LisH dimerisation motif;WD40/YVTN repeat-like-containing domain (.1.2) Potri.006G248100 [exp] 481 / 1e-157 AT4G32551 996 / 0.0 ROTUNDA 2, LEUNIG, LisH dimerisation motif;WD40/YVTN repeat-like-containing domain (.1.2) Potri.004G045601 [exp] 382 / 3e-122 AT2G32700 354 / 1e-111 MUCILAGE-MODIFIED 1, LEUNIG_homolog (.1.2.3.4.5.6.7) Potri.002G051900 [exp] 100 / 8e-23 AT4G02730 524 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Potri.006G045800 [exp] 102 / 2e-22 AT2G41500 614 / 0.0 LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1) Potri.008G002300 [exp] 94 / 2e-19 AT5G08390 1006 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.011G045500 [exp] 87 / 2e-17 AT1G61210 723 / 0.0 DWD hypersensitive to ABA 3, Transducin/WD40 repeat-like superfamily protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043135 [exp] 1122 / 0 AT2G32700 1073 / 0.0 MUCILAGE-MODIFIED 1, LEUNIG_homolog (.1.2.3.4.5.6.7) Lus10032614 [exp] 1116 / 0 AT2G32700 1073 / 0.0 MUCILAGE-MODIFIED 1, LEUNIG_homolog (.1.2.3.4.5.6.7) Lus10022797 [exp] 882 / 0 AT2G32700 903 / 0.0 MUCILAGE-MODIFIED 1, LEUNIG_homolog (.1.2.3.4.5.6.7) Lus10011863 [exp] 873 / 0 AT2G32700 909 / 0.0 MUCILAGE-MODIFIED 1, LEUNIG_homolog (.1.2.3.4.5.6.7) Lus10017754 [exp] 420 / 6e-134 AT4G32551 778 / 0.0 ROTUNDA 2, LEUNIG, LisH dimerisation motif;WD40/YVTN repeat-like-containing domain (.1.2) Lus10033066 [exp] 415 / 1e-132 AT4G32551 746 / 0.0 ROTUNDA 2, LEUNIG, LisH dimerisation motif;WD40/YVTN repeat-like-containing domain (.1.2) Lus10021059 [exp] 103 / 1e-22 AT2G41500 706 / 0.0 LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1) Lus10006916 [exp] 99 / 2e-22 AT4G02730 506 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Lus10014674 [exp] 99 / 3e-22 AT4G02730 508 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Lus10004167 [exp] 100 / 2e-21 AT2G41500 708 / 0.0 LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0561 [poplar] [flax] LisH PF08513 [poplar] [flax] LisH LisH
Representative CDS sequence Show only first row Show all	>Potri.003G178600.4 pacid=42787334 polypeptide=Potri.003G178600.4.p locus=Potri.003G178600 ID=Potri.003G178600.4.v4.1 annot-version=v4.1 ATGGCACAGAGTAATTGGGAAGCAGATAAAATGCTTGATGTGTACATATATGATTATTTGGTGAAGAAGAAATTGCATGCCACCGCAAAATCATTCATGA CAGAAGGGAAAGTTGCCCCCGATCCAGTAGCAATTGATGCTCCTGGGGGGTTTCTTTTTGAGTGGTGGTCTGTCTTCTGGGATATTTTTATAGCAAGGAC TAACGAGAAACATTCTGAGACTGCCGCAGCATATCTAGAGGCACAGCAAAGCAAAACAAAGGAACAGCAACAGCTGCAAATGCAGCACTTCCAACTAATG CATCACGCTCAGTTGCAACGAGGGGGTAATAACAACCCAACCATGGGTGGTCCGGTAAATGCTGTTGGTTCTGAAGGAATGCTCAGGCAATCAAATGCGA GTGTGTTGGCTGCAAAAATGTATGAGGAACGACTGAAGCATTCCAACCAAATGGAATCTGAAACATCCCAACCGCATCTTGATGCTAGGATGGCCCTTCT CAAATCAACTACAAACCATTCAGGCCAGTTGGTCCAAGGAAATCATGGGAATGTTACTGCTGCACTGCAACAAATCCAGGCACAAACTCAACAGACCGCT GATGTCAAACAAGAAGTGAACCTGGGTGCTGCCCAGAGATCTTTGCCTATGGACCCTTCAACCATTTATGGGCAGGGAATCATGCAGTCAAAACCTGGAA TTGGAAATTCAGGATTGAATCCTGGAGTCAATGGTCTTCCATTGAAGGGATGGCCCTTAACTAATATACAGGGAATTGAACAAACTCGGCAGAGTTTAGG TGCACAAGTTCAAAGGCCTCTTTTACATGCTGCAAGTCAGTTTCAGCTTTTGCCACAGCAACAACAGCAGCAGCTCTTGGCACATGTCCAGGCACAAGGG AACCTTTCTGCTTCGCCAATGTATGGAGATATTGATCCACGGAAGTTTAGGGGGTTGCCTAGAGGTCCTTTGAATAGCAAAGATGGCCAACCTAATGTAA AGGATGGATCTATTGGTTCTCCAATGCAATCAACTTCATCTAAGATGAATTTGCCACAGATGCAACAATCATCCTCTCAACAACAAGATCCTTTGCAACC ACAGCAAGGACAGCAGAATAACCGAAAGAGGAAAGGCCCTTCATCTTCTGGACCTGCTAATAGTACTGGTACAGGAAATACAGTAGGCCCTTCTAATTCT CAGCCATCTACCCCATCAACTCATACTCCTGGTGATGGAATTGCCACAGCAGGCAATTTGCAGCATGTCAATAGCATGTCAAAAGGCTTGATGTATGGTG GTGATACAACTGGAGCTCTTGCATCATCCACAAACCCACTGGAAGACATTGAACATTTTGCAGATGTTGGCTCCTTAGATGATAACGTGGAATCTTTTTT ATCACCTGATGATGGAGACGGAAGAGATTTGTTTGGTACCTTAAAAAGGAATTCTTCTGAACATGCTGCTGAAGCTTCAAAAGGTTTCAACTTCAGTGAA GTTAGTTCGATACGCAAAAGTAATGGGAAAGTTGTTTGCTGTCACTTCTCCACAGATGGGAAATTGTTGGCCAGTGCTGGGCATGACAAGAAGGTTGTTC TTTGGAACATGGAAACTCTGCAAACAGAGTGCAATCCAGAGGAGCATACCCACATTATCACTGATGTTCGTTTCAGGCCAAATTCAACTCAGCTGGCAAC ATCTTCATTTGATTCAAGTGTACGTCTCTGGGATGCTGCAGGACCAAGATATGCCTTGCAAACATATACGGGGCATACCTCACATGTGGTGTCCCTTGAC TTTCACCCGAAGAAGAATGATGTTTTCTGCTCCTGTGATGATAACAATGAGATTCGCTTCTGGAACATCAATCAGTATTCTTGCACCCGGATATCCAAGG GAGGGACCACACAAGTTAGATTTCAGCCAAGAATCGGACAACTGCTGGCTGCAGCTGCAGAGAATGTTGTGTCCATCTTTGATGTTGAGGCTGACAGACA GACACACTCATTACGGGGGCACTCCACAGCGGTACACTCTGTTTGCTGGGATGTGAACGGAGATTACTTGGCATCTGTCAGTCAAGAATCTGTTAGAGTG TGGTCATTGGCCACAGGAGAGTGCATTCATGAACTTAGTTCAAGTGGGAACAAGTTCCATTCTTGTGTTTTCCATCCGAGCTACTCCACTCTCTTGGTTA TTGGAGGCTACCAGTCATTGGAGCTTTGGAACATGGCTGAGAACAAGTGCATGACGGTTGCGGCTCATGAGTGTGTGATATCAGCTTTGGCTCAATCACA AGCTACAGGGATGGTTGCTTCTGCAAGTCATGACAAATGTGTGAAGATATGGAAGTAA
AA sequence Show only first row Show all	>Potri.003G178600.4 pacid=42787334 polypeptide=Potri.003G178600.4.p locus=Potri.003G178600 ID=Potri.003G178600.4.v4.1 annot-version=v4.1 MAQSNWEADKMLDVYIYDYLVKKKLHATAKSFMTEGKVAPDPVAIDAPGGFLFEWWSVFWDIFIARTNEKHSETAAAYLEAQQSKTKEQQQLQMQHFQLM HHAQLQRGGNNNPTMGGPVNAVGSEGMLRQSNASVLAAKMYEERLKHSNQMESETSQPHLDARMALLKSTTNHSGQLVQGNHGNVTAALQQIQAQTQQTA DVKQEVNLGAAQRSLPMDPSTIYGQGIMQSKPGIGNSGLNPGVNGLPLKGWPLTNIQGIEQTRQSLGAQVQRPLLHAASQFQLLPQQQQQQLLAHVQAQG NLSASPMYGDIDPRKFRGLPRGPLNSKDGQPNVKDGSIGSPMQSTSSKMNLPQMQQSSSQQQDPLQPQQGQQNNRKRKGPSSSGPANSTGTGNTVGPSNS QPSTPSTHTPGDGIATAGNLQHVNSMSKGLMYGGDTTGALASSTNPLEDIEHFADVGSLDDNVESFLSPDDGDGRDLFGTLKRNSSEHAAEASKGFNFSE VSSIRKSNGKVVCCHFSTDGKLLASAGHDKKVVLWNMETLQTECNPEEHTHIITDVRFRPNSTQLATSSFDSSVRLWDAAGPRYALQTYTGHTSHVVSLD FHPKKNDVFCSCDDNNEIRFWNINQYSCTRISKGGTTQVRFQPRIGQLLAAAAENVVSIFDVEADRQTHSLRGHSTAVHSVCWDVNGDYLASVSQESVRV WSLATGECIHELSSSGNKFHSCVFHPSYSTLLVIGGYQSLELWNMAENKCMTVAAHECVISALAQSQATGMVASASHDKCVKIWK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G32700		MUM1, LUH	MUCILAGE-MODIFIED 1, LEUNIG_ho...		Potri.003G178600 [exp]	0	1
AT1G80490		TPR1	TOPLESS-related 1 (.1.2)		Potri.006G257900 [exp]	1.00	0.9131
AT4G13780			methionine--tRNA ligase, putat...		Potri.001G317500 [exp]	2.82	0.8865
AT2G17410	ARID		ARID/BRIGHT DNA-binding domain...		Potri.011G145450 [exp]	4.24	0.8939
AT4G23980	ARF	ARF9	auxin response factor 9 (.1.2)		Potri.002G172800 [exp]	8.06	0.8809
AT4G11860			Protein of unknown function (D...		Potri.001G112300 [exp]	9.79	0.8306
AT5G28300	Trihelix		Duplicated homeodomain-like su...		Potri.005G051700 [exp]	10.00	0.8608
AT3G09100			mRNA capping enzyme family pro...		Potri.006G096000 [exp]	10.67	0.8672
AT4G02940			oxidoreductase, 2OG-Fe(II) oxy...		Potri.014G137700 [exp]	11.18	0.8334
AT1G32330	HSF	ATHSFA1D	heat shock transcription facto...		Potri.003G095000 [exp]	11.66	0.8069	Pt-ATHSFA1.1
AT3G49290		ABIL2	ABL interactor-like protein 2 ...		Potri.003G142800 [exp]	11.74	0.8068

Compare expression of checked genes

Potri.003G178600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.