Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G24800 269 / 1e-85 PRT1 proteolysis 1 (.1) AT1G18660 57 / 1e-08 zinc finger (C3HC4-type RING finger) family protein (.1), zinc finger (C3HC4-type RING finger) family protein (.2), zinc finger (C3HC4-type RING finger) family protein (.3), zinc finger (C3HC4-type RING finger) family protein (.4) AT2G42030 52 / 6e-07 RING/U-box superfamily protein (.1) AT1G74990 49 / 7e-07 RING/U-box superfamily protein (.1) AT3G58030 45 / 9e-05 RING/U-box superfamily protein (.1.2.3.4) AT1G19310 42 / 0.0004 RING/U-box superfamily protein (.1) AT2G38920 42 / 0.0005 SPX (SYG1/Pho81/XPR1) domain-containing protein / zinc finger (C3HC4-type RING finger) protein-related AT4G03510 42 / 0.0006 ATRMA1, RMA1 RING membrane-anchor 1 (.1.2) AT1G02860 42 / 0.0008 BAH1, NLA nitrogen limitation adaptation, BENZOIC ACID HYPERSENSITIVE 1, SPX (SYG1/Pho81/XPR1) domain-containing protein (.1), SPX (SYG1/Pho81/XPR1) domain-containing protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G049300 [exp] 402 / 2e-139 AT3G24800 199 / 7e-61 proteolysis 1 (.1) Potri.002G241900 [exp] 305 / 7e-99 AT3G24800 314 / 2e-103 proteolysis 1 (.1) Potri.012G068100 [exp] 57 / 1e-08 AT1G18660 679 / 0.0 zinc finger (C3HC4-type RING finger) family protein (.1), zinc finger (C3HC4-type RING finger) family protein (.2), zinc finger (C3HC4-type RING finger) family protein (.3), zinc finger (C3HC4-type RING finger) family protein (.4) Potri.013G132300 [exp] 45 / 5e-05 AT4G03510 191 / 2e-60 RING membrane-anchor 1 (.1.2) Potri.016G058300 [exp] 45 / 0.0001 AT3G58030 331 / 7e-110 RING/U-box superfamily protein (.1.2.3.4) Potri.004G042700 [exp] 43 / 0.0002 AT4G03510 157 / 1e-47 RING membrane-anchor 1 (.1.2) Potri.005G127900 [exp] 43 / 0.0002 AT2G23780 234 / 3e-78 RING/U-box superfamily protein (.1) Potri.007G031600 [exp] 43 / 0.0003 AT2G23780 227 / 4e-75 RING/U-box superfamily protein (.1) Potri.019G100800 [exp] 42 / 0.0004 AT4G03510 187 / 1e-58 RING membrane-anchor 1 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025930 [exp] 255 / 3e-80 AT3G24800 287 / 2e-93 proteolysis 1 (.1) Lus10038169 [exp] 261 / 1e-77 AT5G48800 482 / 0.0 Phototropic-responsive NPH3 family protein (.1) Lus10015722 [exp] 62 / 7e-10 AT1G18660 667 / 0.0 zinc finger (C3HC4-type RING finger) family protein (.1), zinc finger (C3HC4-type RING finger) family protein (.2), zinc finger (C3HC4-type RING finger) family protein (.3), zinc finger (C3HC4-type RING finger) family protein (.4) Lus10019075 [exp] 61 / 2e-09 AT1G18660 583 / 0.0 zinc finger (C3HC4-type RING finger) family protein (.1), zinc finger (C3HC4-type RING finger) family protein (.2), zinc finger (C3HC4-type RING finger) family protein (.3), zinc finger (C3HC4-type RING finger) family protein (.4) Lus10012290 [exp] 45 / 9e-05 AT2G38920 392 / 5e-137 SPX (SYG1/Pho81/XPR1) domain-containing protein / zinc finger (C3HC4-type RING finger) protein-related Lus10011184 [exp] 44 / 0.0001 AT4G03510 164 / 5e-50 RING membrane-anchor 1 (.1.2) Lus10015986 [exp] 44 / 0.0001 AT2G38920 389 / 1e-135 SPX (SYG1/Pho81/XPR1) domain-containing protein / zinc finger (C3HC4-type RING finger) protein-related Lus10016796 [exp] 44 / 0.0001 AT2G23780 242 / 3e-81 RING/U-box superfamily protein (.1) Lus10022492 [exp] 44 / 0.0001 AT2G23780 241 / 1e-80 RING/U-box superfamily protein (.1) Lus10018489 [exp] 44 / 0.0002 AT4G03510 159 / 7e-48 RING membrane-anchor 1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0006 [poplar] [flax] C1 PF00569 [poplar] [flax] ZZ Zinc finger, ZZ type
Representative CDS sequence Show only first row Show all	>Potri.003G178700.1 pacid=42786618 polypeptide=Potri.003G178700.1.p locus=Potri.003G178700 ID=Potri.003G178700.1.v4.1 annot-version=v4.1 ATGGAAAACAAAGATAACAACAAAATCCCATCAACAGAAGAATCGAAAATGCAATGCCAATGCGACAATAACAAGAAAACCCCATCACCGAAACATCTTC AGCAAATTGAAGAAGATAATGTCCGAGAAGAAGAGGATTTCCTTGACGAGTTCCAGTGCTCTGTTTGCCTGGACCTACTTTACAAGCCAGTTGTATTAGG ATGTGGCCACCTTTCATGCTTCTGGTGTGTCTTTTATAGCATGAATGGGCTGCGTGAGTCACACTGTCCAATTTGTCGGCACCAGTTTAATCATTTCCCA AGTGTGTGTCAATTGCTGCATTTCCTGCTTATGAAGATGTACCCTATAGCCTATAAGAGACGGGAAAGAGAAGTGGGAGAAGAAGAAAAGAAAGGTGGCC GCTTTTCACCTCAGTTTGTTCATCATCCATTTGGATCACATTCTGGTGAAGAGCTGGATTTCCCAAGCTATTCTCAGCATTTCCCTATTCATCCTCAAAA TAAGTTGTGTTATTTTCCAAAAGCAATTGCTCATAGAGAGGAAAATATGAAAATTGTGCCATCAACACTATCAAGTAGATCTGACGGAACTACAAATGCA GCCATTGAAAATTGCAACTTGATTGGGACAGAGTTTGGACATGGAATTAAGACTCAGGCCTCTGTTGCTGACTTGCTGTGTGCTGAATGCAAGAAATTGC TGTTTCAACCAGTGGTTCTTAATTGTGGCCATGTGTATTGTGAATCTTGTATCGCCAGTCCCATGCAAGGGATTCCTAGGTGTCAAATTTGTCAAAGTTT GCATCCAAATGGGATCCCGAGTGTTTGTTTAGTCCTAGAGCATTTTTTGGAGGAGCAGTTTTCTGAAATATATGCAGAGAGACGAGAAGCTTTTGCCAAA CAAACTGATTGTTCAAGTTCAGCACAAACTCAACAATTAGCTACGCAGTCATCATCAGTACCTGCTAAGGTCTATTCATCATGGATATTTGGCAATGGAC CCAAGGTTCACATTAGAGTTGGTTGTGATTCTTGTGGGATGATACCAATAATTGGGGAGAGGTACAAATGCAAAGACTGTTCAGAGGAAATAGGTTTTGA CATGTGTGAATCATGCTACAACAATCCCTCTGAAGTGTCAGGCCGATTTAATCAGCAGCATAAACCAGAGCACAATTTTGAGATTGTGCCGCCACGGGGC ATTGGTGAATTTATATACATGCTGAATCTTGATCAGTCTGATGACACAGATGACTCAGATGATGATGGACATGATTTTCTTGCTCAAGTCTTGTCAGATG ATGCTCTACAGGATGTAGAGGATGGTTCTAATGATTTGTTAGAAGTTTCTGCTTTGGTTTTGTCAGTCGATGTTGCACCAGATCAAGAAGATGATCCTAG TGTCTCCTAG
AA sequence Show only first row Show all	>Potri.003G178700.1 pacid=42786618 polypeptide=Potri.003G178700.1.p locus=Potri.003G178700 ID=Potri.003G178700.1.v4.1 annot-version=v4.1 MENKDNNKIPSTEESKMQCQCDNNKKTPSPKHLQQIEEDNVREEEDFLDEFQCSVCLDLLYKPVVLGCGHLSCFWCVFYSMNGLRESHCPICRHQFNHFP SVCQLLHFLLMKMYPIAYKRREREVGEEEKKGGRFSPQFVHHPFGSHSGEELDFPSYSQHFPIHPQNKLCYFPKAIAHREENMKIVPSTLSSRSDGTTNA AIENCNLIGTEFGHGIKTQASVADLLCAECKKLLFQPVVLNCGHVYCESCIASPMQGIPRCQICQSLHPNGIPSVCLVLEHFLEEQFSEIYAERREAFAK QTDCSSSAQTQQLATQSSSVPAKVYSSWIFGNGPKVHIRVGCDSCGMIPIIGERYKCKDCSEEIGFDMCESCYNNPSEVSGRFNQQHKPEHNFEIVPPRG IGEFIYMLNLDQSDDTDDSDDDGHDFLAQVLSDDALQDVEDGSNDLLEVSALVLSVDVAPDQEDDPSVS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G24800		PRT1	proteolysis 1 (.1)		Potri.003G178700 [exp]	0	1
AT2G32120		HSP70T-2	heat-shock protein 70T-2 (.1.2...		Potri.010G088600 [exp]	5.91	0.9550
AT1G31280		AGO2	argonaute 2, Argonaute family ...		Potri.015G117401 [exp]	8.00	0.9219
AT4G10250		ATHSP22.0	HSP20-like chaperones superfam...		Potri.013G089200 [exp]	8.36	0.9544
AT1G04910			O-fucosyltransferase family pr...		Potri.017G057300 [exp]	9.48	0.9059
AT5G42120			Concanavalin A-like lectin pro...		Potri.005G189500 [exp]	10.95	0.9275
AT1G53540			HSP20-like chaperones superfam...		Potri.001G238700 [exp]	11.66	0.9525	Pt-HSP17.13
AT2G26150	HSF	ATHSFA2	heat shock transcription facto...		Potri.006G226800 [exp]	14.28	0.9484
AT2G20560			DNAJ heat shock family protein...		Potri.011G057601 [exp]	16.52	0.9481
AT1G52560			HSP20-like chaperones superfam...		Potri.001G192600 [exp]	17.43	0.9471
AT5G57870		eIFiso4G1	eukaryotic translation Initiat...		Potri.006G182100 [exp]	18.30	0.8895

Compare expression of checked genes

Potri.003G178700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.