Plant FIBer expression Database

Potri.003G178800 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G80620 254 / 5e-80 S15/NS1, RNA-binding protein (.1)
AT1G15810 222 / 2e-67 S15/NS1, RNA-binding protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10009249
[exp]
228 / 7e-70 AT1G80620 273 / 6e-88 S15/NS1, RNA-binding protein (.1)
Lus10010090
[exp]
219 / 3e-66 AT1G15810 265 / 7e-85 S15/NS1, RNA-binding protein (.1)
Lus10038010
[exp]
204 / 2e-60 AT1G80620 275 / 2e-88 S15/NS1, RNA-binding protein (.1)
Lus10007211
[exp]
201 / 2e-56 AT1G02310 405 / 4e-134 endo-beta-mannanase 1, Glycosyl hydrolase superfamily protein (.1)
PFAM info
Representative CDS sequence
>Potri.003G178800.2 pacid=42785664 polypeptide=Potri.003G178800.2.p locus=Potri.003G178800 ID=Potri.003G178800.2.v4.1 annot-version=v4.1
ATGGCTCTCTCTCTTTCAAGACCCAGACACAGATCCCTCTCTAACCCTTATCTAATCCACCTCTTCTCTTCCTCTTCCACAACCCCATCAGATGACCCCT
CTGTTTCCGAACCCCAGCAACAGCAACAGCAACAGCAACAGCAACAGCAACAGCAACAGCAAAAGTCCTCTCTCTCTAGCTATTTCAATGATGTCAAAGC
CAGTCTTAAGCAACAAAACCCTGAAAACAGGCCAAATTCTCCACCTTTAAGTAAACCCAGTTACTCAACAAACCAATCATTCTCAAAACCCACAAGCAAT
ATTGCTTCTTTTGATGAAATCAGAAAGAATCTCTCTGAATTCAGGCTTCGATCCTCTGATCCACCACCTAGAGAACCTAACTCTGCTCCCTCACAGGAGC
CATCTTCTAAGCAACAGATCTCATTTCAAGAACTTTATAAAAGAAATGTCCTTGCAAGATCGACGGGTGGTAGTGGAACCACTCAATCAGGTGGTATCAA
TGCTAACCAACCCATTTCAGGGAGGCTAACATTTGACGCAATTAGAGAGAGTTTGAGGCAGATGAAGGGTGGTGGTGATAATAACAATACCGCGGCCGGG
AGAGGCCGTGTTGGGGAATTGTCATTTTCGAGTTTTAAGATAAAGCCAGGAAACGAAAATGAACCAATGAATAAGTCGACTATAATTGGTGGGACTGAGG
GGTTGCCGAGTGCGGTATTTGGGAGGGAAATGGAGGGGGAAGGGGGTGCAAAAGGTGAAATGAGTACGGAGTTTGTGAAAATGTATAGTCATGGAGAGTT
GGGAGATAAGTTGAGGATTTTGCGGCCAAAGGTGAAAAGGGGTGAAAAGGGGTGGTTTACGTTGAAGGAATTGAACGAGAGGTTGAGGAAGTTGAGGGAA
ATGGAGGAAAAGGAGACAGAGTCGAGGATTAGTGGGGTTTCCTTTAGGGATTTGAGGGAGAGTTTAGTGAAGTTGAAAGCGTCCAGTGATGAGAAGGCTA
TAAAGAATTCGGTTCAGAGACTGAATCTCATGGGCCAGTTACGAGCTTCAAATGTAACGCTGCAGCCTCCAAAGAAGCACTTAGTTGAGAAGTATTTCCA
TCCAGATAACATGTCTTCTTCTGAGAAAATGAAAATTGAGCTTGCAAGAGTTAGAGATGAATTTAAAATGTCAGAGTCAGACTGTGGATCTGCACGTGTT
CAAGTGGCACTACTGACAACTAAGATCAAGCATCTCTCTTCGGTTCTGAACAAGAAGGATAAGCATTCTCGGAAGGGTCTTATAGGGATGGTTCAAAAGA
GGAAGAAGTTGTTGAAGTATCTCCGGAGGACTGACTGGGATTCTTACTGCCTTGTTCTTTCAAAACTTGGTCTCCGAGACAATCCAGATCACAAGACCCT
GACTAGACAATAA
AA sequence
>Potri.003G178800.2 pacid=42785664 polypeptide=Potri.003G178800.2.p locus=Potri.003G178800 ID=Potri.003G178800.2.v4.1 annot-version=v4.1
MALSLSRPRHRSLSNPYLIHLFSSSSTTPSDDPSVSEPQQQQQQQQQQQQQQQQKSSLSSYFNDVKASLKQQNPENRPNSPPLSKPSYSTNQSFSKPTSN
IASFDEIRKNLSEFRLRSSDPPPREPNSAPSQEPSSKQQISFQELYKRNVLARSTGGSGTTQSGGINANQPISGRLTFDAIRESLRQMKGGGDNNNTAAG
RGRVGELSFSSFKIKPGNENEPMNKSTIIGGTEGLPSAVFGREMEGEGGAKGEMSTEFVKMYSHGELGDKLRILRPKVKRGEKGWFTLKELNERLRKLRE
MEEKETESRISGVSFRDLRESLVKLKASSDEKAIKNSVQRLNLMGQLRASNVTLQPPKKHLVEKYFHPDNMSSSEKMKIELARVRDEFKMSESDCGSARV
QVALLTTKIKHLSSVLNKKDKHSRKGLIGMVQKRKKLLKYLRRTDWDSYCLVLSKLGLRDNPDHKTLTRQ

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G80620 S15/NS1, RNA-binding protein (... Potri.003G178800
[exp]
0 1
AT3G56150 ATTIF3C1, ATEIF... eukaryotic translation initiat... Potri.005G245100
[exp]
2.00 0.8358 TIF3.9
AT5G57120 unknown protein Potri.018G140200
[exp]
4.24 0.8331
AT3G07930 DNA glycosylase superfamily pr... Potri.014G187766
[exp]
6.00 0.7901
AT1G08130 ATLIG1 DNA ligase 1 (.1) Potri.009G005900
[exp]
6.70 0.7828
AT2G03820 nonsense-mediated mRNA decay N... Potri.004G085700
[exp]
6.92 0.7521
AT5G27640 ATTIF3B1, ATEIF... EUKARYOTIC TRANSLATION INITIAT... Potri.018G015200
[exp]
7.34 0.8271 EIF3.5
AT2G03820 nonsense-mediated mRNA decay N... Potri.004G121500
[exp]
7.74 0.7444
AT2G16650 PRORP2 proteinaceous RNase P 2 (.1) Potri.009G145200
[exp]
8.36 0.7785
AT5G25800 Polynucleotidyl transferase, r... Potri.005G186600
[exp]
9.16 0.7846
AT3G12860 NOP56-like pre RNA processing ... Potri.015G092900
[exp]
14.69 0.7931 NOP56.1

Potri.003G178800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.