Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G15520 2000 / 0 ATABCG40, ABCG40, PDR12, ATPDR12 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) AT2G36380 1696 / 0 ABCG34, PDR6, ATPDR6 ATP-binding cassette G34, pleiotropic drug resistance 6 (.1) AT1G66950 1686 / 0 ABCG39, PDR11, ATPDR11 ATP-binding cassette G39, pleiotropic drug resistance 11 (.1) AT1G15210 1622 / 0 ABCG35, PDR7, ATPDR7 ATP-binding cassette G35, pleiotropic drug resistance 7 (.1) AT3G16340 1619 / 0 ABCG29, ATPDR1, PDR1, AtABCG29 ATP-binding cassette G29, pleiotropic drug resistance 1 (.1.2) AT2G26910 1619 / 0 PEC1, ABCG32, PDR4, ATPDR4 PERMEABLE CUTICLE 1, ATP-binding cassette G32, pleiotropic drug resistance 4 (.1) AT1G59870 1618 / 0 ATABCG36, ABCG36, PEN3, PDR8, ATPDR8 PENETRATION 3, ARABIDOPSIS PLEIOTROPIC DRUG RESISTANCE 8, Arabidopsis thaliana ATP-binding cassette G36, ATP-binding cassette G36, ABC-2 and Plant PDR ABC-type transporter family protein (.1) AT3G30842 1489 / 0 ABCG38, PDR10, ATPDR10 ATP-binding cassette G38, pleiotropic drug resistance 10 (.1) AT2G29940 1459 / 0 ABCG31, PDR3, ATPDR3 ATP-binding cassette G31, pleiotropic drug resistance 3 (.1) AT3G53480 1389 / 0 PIS1, ABCG37, PDR9, ATPDR9 polar auxin transport inhibitor sensitive 1, ATP-binding cassette G37, pleiotropic drug resistance 9 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G179000 [exp] 2699 / 0 AT1G15520 2010 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) Potri.001G048900 [exp] 2437 / 0 AT1G15520 2055 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) Potri.001G048800 [exp] 2409 / 0 AT1G15520 2034 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) Potri.001G048700 [exp] 2401 / 0 AT1G15520 2000 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) Potri.001G175700 [exp] 2090 / 0 AT1G15520 2058 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) Potri.003G183200 [exp] 2070 / 0 AT1G15520 2031 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) Potri.001G049000 [exp] 2058 / 0 AT1G15520 1847 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) Potri.018G032900 [exp] 2049 / 0 AT1G15520 2041 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) Potri.006G248500 [exp] 2045 / 0 AT1G15520 2050 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024061 [exp] 2105 / 0 AT1G15520 2139 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) Lus10024060 [exp] 2075 / 0 AT1G15520 2115 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) Lus10041668 [exp] 2015 / 0 AT1G15520 2128 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) Lus10041683 [exp] 1984 / 0 AT1G15520 2019 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) Lus10034020 [exp] 1958 / 0 AT1G15520 2029 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) Lus10008090 [exp] 1943 / 0 AT1G15520 2045 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) Lus10024062 [exp] 1781 / 0 AT1G15520 1820 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) Lus10014150 [exp] 1625 / 0 AT3G16340 2221 / 0.0 ATP-binding cassette G29, pleiotropic drug resistance 1 (.1.2) Lus10019453 [exp] 1617 / 0 AT2G26910 2354 / 0.0 PERMEABLE CUTICLE 1, ATP-binding cassette G32, pleiotropic drug resistance 4 (.1) Lus10025824 [exp] 1615 / 0 AT1G59870 2220 / 0.0 PENETRATION 3, ARABIDOPSIS PLEIOTROPIC DRUG RESISTANCE 8, Arabidopsis thaliana ATP-binding cassette G36, ATP-binding cassette G36, ABC-2 and Plant PDR ABC-type transporter family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00005 [poplar] [flax] ABC_tran ABC transporter CL0181 [poplar] [flax] ABC-2 PF01061 [poplar] [flax] ABC2_membrane ABC-2 type transporter CL0181 [poplar] [flax] PF08370 [poplar] [flax] PDR_assoc Plant PDR ABC transporter associated CL0181 [poplar] [flax] PF14510 [poplar] [flax] ABC_trans_N ABC-transporter N-terminal
Representative CDS sequence Show only first row Show all	>Potri.003G178900.1 pacid=42786150 polypeptide=Potri.003G178900.1.p locus=Potri.003G178900 ID=Potri.003G178900.1.v4.1 annot-version=v4.1 ATGGAGAGTGCTGTTATTTCTAGAGGTAGTGACAGTTTTAGAGGTAGTTCTAGAGGAGTTTCGTCAGTATGGAGAAACAGCACTGTGGAAGTGTTTTCAA GATCTTCAAGAGAAGAAGATGATGAAGAGGCTCTAAAATGGGCTGCGCTTGAGAAACTACCTACCTATGATCGTTTAAGGAAAGGTATATTAACGAGTGC GTCAAGAGGTATAATTAGTGAGGTAGATATTGAGAACCTTGGAGTCCAAGAGAGAAAACAGTTGCTTGAGAGGTTGGTCAAAGTTGCAGACGAGGATAAT GAGAAGTTCTTGTGGAAACTCAAGAACCGTGTTGAAAGGGTTGGAATTGAGTTTCCAACAATTGAAGTTCGGTACGAGAATCTAAATATTGAAGCAGAAG CTTACGTGGGAAGTAGTGCTTTGCCTTCATTCGCCAAGTTCATTTTTCATATAATAGAGGGTTTTTTTATTGCTCTTCATGTCCTTCCAAGTAGAAAGAA GCCACTCACCATCCTTAAGGATGTTAGTGGAATCATCAAGCCATCAAGATTGACTTTGCTTTTGGGTCCTCCGAATTCTGGGAAGACCACACTGTTGTTG GCAATGGCTGGAAAGCTTGATCCTAGTCTGAAGTTTTCTGGTCATGTGACTTACAATGGTCATGAGATGAACGAATTTGTACCACAAAGAACGGCTGCCT ATGTCAGTCAACATGATCTCCATATAGGAGAAATGACTGTGAGGGAGACTTTGGAATTCTCTGCCAGATGCCAAGGGGTTGGCCACCTACATGAGATGCT AGCAGAGTTGTCGAGAAGAGAGAAAGAAGCCAACATCAAGCCTGATCAAGATGTTGATGTCTTCATGAAGGCAGTAGCAACACAAGGTCAAGAGGCCAGT GTCATCACCGATTACGTCTTGAAGATATTAGGATTGGAAGTCTGCGCAGATACTTTGGTAGGGGATGAAATGATAAGGGGTATATCTGGAGGACAAAGGA AGCGTGTTACAACCGGGGAAATGCTGGTCGGACCATCAAGGGCATTGCTTATGGATGAGATTTCTACAGGCCTGGATAGCTCAACAACTTACCAAATTGT GAACTCATTAAAGCAAACTATTCACGTTCTCAATTGCACTGCTGTCATCTCACTTCTCCAGCCAGCACCAGAGACTTATGACCTCTTTGATGACATCATT CTCCTGTCAGATGGCCAAATTGTGTACCAGGGTCCTCGTGAAAATGTGCTTGGATTTTTTGAACATATGGGCTTCAAGTGTCCCGACAGAAAAGGCGTGG CAGACTTTCTACAAGAAGTGACATCAAAAAAAGATCAAGAGCAGTATTGGGCAATTAAAGATCAGCCTTACAGGTTTGTCAGGGTCAACGAATTTTCTGA GGCATTTCAGTCATTCAACGTGGGACGAAAGATCGCAGATGAGCTTTCAATCCCATTTGACAAGACTAAGAACCATCCAGCTGCATTGGTAAACAAAAAA TATGGAGCTGGAAAGATGGATCTGCTTAAAGCTAACTTCTCAAGAGAATACTTGCTCATGAAGAGGAACTCATTTGTCTACATCTTCAAGATATGCCAAC TGACAGTAGTGGCATTGATTTCCATGTCACTCTTTTTTCGGACCAAGATGCATCATGATACGGTTGCCGATGGAGGAATTTATACCGGTGCTTTGTTCTT CACTGTGATCATTATAATGTTTAATGGAATGTCAGAGCTATCTATGACCATCGTAAAGCTTCCTGTGTTTTACAAGCAAAGGGAACTCCTATTCTTTCCT CCATGGGCATATTCAATTCCTCCATGGATTCTGAAAATTCCCGTCACGTTTGTTGAAGTTGCTGCATGGGTGCTCCTAACCTATTATGTAATTGGATTTG ATCCAAATGTTGAAAGGCTTTTAAGGCAGTACTTTCTGCTTTTGCTAATTAACCAGATGGCATCTGCACTATTTCGATTTATTGCTGCAGCTGGAAGGAA CATGATTGTTGCTAACACTTTTGGGTCTTTTGCGCTACTTACACTTTTTGCATTGGGTGGCTTTATCTTGTCTCGAGAGCAAATAAAAAAGTGGTGGATA TGGGGTTACTGGCTTTCACCATTGATGTATGGGCAGAACGCAATAGTAGTGAATGAGTTCCTTGGACATAGCTGGAGTCATATTCCTGGAACCTCCACAG AACCACTAGGAATCCAAGTTTTGAAGAGTCGCGAATTTTTCACTGAAGCAAATTGGTATTGGATAGGAGTAGGGGCAACAGTAGGATTCATGCTACTGTT CAATATCTGCTTCGCTTTGGCCCTCACTTTCCTCAATGCATTTGAGAAGCCTCAAGCTTTTATATTTGAAGAATCCGAAAGGGAAGGTTCTGTTGGCAAA ACAGGAGGAGCTGTTCAGTTATCAAACCATGGAAGTAGCCACAAAAACAAAACAGAGAATGGAGATGAAATTAATAGAAATGGTTTTGCGTCCATTGGTG AAGCCAGCGATAACAGGAAGAGAGGGATGGTTCTTCCATTTGAACCACATTCCATCACATTTGATGATGTTATTTACTCCGTTGACATGCCACAGGAAAT GAAAATTCAAGGAGTAGTTGAGGATAGATTGGTGCTTTTGAAGGGTGTGAATGGTGCTTTCAGGCCTGGTGTCCTTACAACTTTGATGGGTGTTAGTGGT GCAGGAAAAACGACTTTGATGGATGTGCTGGCAGGTAGGAAAACTGGTGGATATATTGAGGGAGACATCAAAATTTCTGGGTACCCAAAGAAGCAAGAAA CTTTTGCTAGAATTGCAGGATACTGTGAACAAAATGACATTCACTCTCCACATGTTACTGTCTACGAATCCTTACTCTACTCAGCCTGGCTTCGTCTACC CCCTGAAGTTGATTCTGAAACCAGAAAGATGTTCATTGACGAAGTCATGGAGCTTGTGGAGTTGGATTCGTTGCGCAATGCATTAGTTGGGTTGCCTGGT GTGAATGGTTTGTCCACTGAGCAGCGCAAGCGTCTAACCATTGCAGTAGAGCTCGTTGCAAACCCCTCTATCATATTCATGGATGAGCCAACTTCAGGGT TAGATGCTAGAGCTGCTGCAATTGTGATGAGAACAGTAAGAAACACTGTGGACACAGGAAGAACAGTTGTATGCACCATCCACCAGCCCAGTATAGATAT ATTTGATGCTTTTGATGAGCTATTCCTGATGAAGCGAGGAGGAGAAGAGATATATGTGGGGCCATTGGGTCACCATTCTACCCATCTAATTAAATACTTT GAGGCAATTGAAGGAGTGAGTAAAATTAAAGATGGTTATAATCCAGCAACATGGATGTTGGAAGTTACTGCTTCATCACAAGAGATGGCTTTGGAGGTTG ATTTTGCTAATATTTACAAGAATTCAGATCTGTTCAGGAGAAACAAAGCTCTCATTGCGGAATTAAGCACACCTGCTCCCGGCTCCAAGGACGTTCATTT CCCTACACGGTATTCAACATCATTTTTCACACAATGTATGGCTTGCTTGTGGAAGCAACATTGGTCATACTGGAGGAACCCACCGTACACGGCCGTGAGA TTTCTTTTCACAACCTTTATAGCCTTGATGTTTGGAACAATGTTCTGGGACCTTGGCTCCAAAGTGAAAACTACCCAAGATCTTTCCAACGCAATGGGTT CGATGTATGCAGCAGTTCTCTTCCTTGGTTTTCAAAATGGAACAGCTGTGCAGCCAGTGGTGGCTGTTGAAAGAACTGTCTTCTACAGAGAAAGGGCTGC TGGAATGTATTCAGCTTTGCCCTATGCCTTTGCACAGGCCCTGATTGAGCTTCCATATGTCTTTGTTCAAGCTGCAGTCTACGGCGTTATAGTTTATGCA ATGATTGGATTTGAATGGACTGCAGCTAAGTTCTTTTGGTATCTATTCTTTATGTACTTCACACTATTATACTTCACCTTTTATGGAATGATGGCTGTAG CTGTGACTCCAAACCACCACATAGCTGGCATAGTTTCCACAGCATTTTATGCAATCTGGAACCTCTTCTCAGGGTTTATAATTCCCCGAACTCGGATACC TATATGGTGGAGATGGTACTACTGGGGATGCCCCGTATCATGGTCCTTGTATGGATTGGTTGTGTCACAGTATGGAGATATACAGGAACCCATTACCGCA ACTCAAACAGTGGAAGGATATGTCAAGGATTACTTCGGTTTTGACCACGATTTTCTTGGAGTAGTTGCAGCCGTGGTTCTTGGGTGGACTGTCCTCTTTG CCTTCATTTTCGCCTTCTCTATAAAGGCCTTCAACTTCCAGAGGCGATAG
AA sequence Show only first row Show all	>Potri.003G178900.1 pacid=42786150 polypeptide=Potri.003G178900.1.p locus=Potri.003G178900 ID=Potri.003G178900.1.v4.1 annot-version=v4.1 MESAVISRGSDSFRGSSRGVSSVWRNSTVEVFSRSSREEDDEEALKWAALEKLPTYDRLRKGILTSASRGIISEVDIENLGVQERKQLLERLVKVADEDN EKFLWKLKNRVERVGIEFPTIEVRYENLNIEAEAYVGSSALPSFAKFIFHIIEGFFIALHVLPSRKKPLTILKDVSGIIKPSRLTLLLGPPNSGKTTLLL AMAGKLDPSLKFSGHVTYNGHEMNEFVPQRTAAYVSQHDLHIGEMTVRETLEFSARCQGVGHLHEMLAELSRREKEANIKPDQDVDVFMKAVATQGQEAS VITDYVLKILGLEVCADTLVGDEMIRGISGGQRKRVTTGEMLVGPSRALLMDEISTGLDSSTTYQIVNSLKQTIHVLNCTAVISLLQPAPETYDLFDDII LLSDGQIVYQGPRENVLGFFEHMGFKCPDRKGVADFLQEVTSKKDQEQYWAIKDQPYRFVRVNEFSEAFQSFNVGRKIADELSIPFDKTKNHPAALVNKK YGAGKMDLLKANFSREYLLMKRNSFVYIFKICQLTVVALISMSLFFRTKMHHDTVADGGIYTGALFFTVIIIMFNGMSELSMTIVKLPVFYKQRELLFFP PWAYSIPPWILKIPVTFVEVAAWVLLTYYVIGFDPNVERLLRQYFLLLLINQMASALFRFIAAAGRNMIVANTFGSFALLTLFALGGFILSREQIKKWWI WGYWLSPLMYGQNAIVVNEFLGHSWSHIPGTSTEPLGIQVLKSREFFTEANWYWIGVGATVGFMLLFNICFALALTFLNAFEKPQAFIFEESEREGSVGK TGGAVQLSNHGSSHKNKTENGDEINRNGFASIGEASDNRKRGMVLPFEPHSITFDDVIYSVDMPQEMKIQGVVEDRLVLLKGVNGAFRPGVLTTLMGVSG AGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQETFARIAGYCEQNDIHSPHVTVYESLLYSAWLRLPPEVDSETRKMFIDEVMELVELDSLRNALVGLPG VNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFDAFDELFLMKRGGEEIYVGPLGHHSTHLIKYF EAIEGVSKIKDGYNPATWMLEVTASSQEMALEVDFANIYKNSDLFRRNKALIAELSTPAPGSKDVHFPTRYSTSFFTQCMACLWKQHWSYWRNPPYTAVR FLFTTFIALMFGTMFWDLGSKVKTTQDLSNAMGSMYAAVLFLGFQNGTAVQPVVAVERTVFYRERAAGMYSALPYAFAQALIELPYVFVQAAVYGVIVYA MIGFEWTAAKFFWYLFFMYFTLLYFTFYGMMAVAVTPNHHIAGIVSTAFYAIWNLFSGFIIPRTRIPIWWRWYYWGCPVSWSLYGLVVSQYGDIQEPITA TQTVEGYVKDYFGFDHDFLGVVAAVVLGWTVLFAFIFAFSIKAFNFQRR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G15520		ATABCG40, ABCG4...	Arabidopsis thaliana ATP-bindi...		Potri.003G178900 [exp]	0	1
AT4G10350	NAC	BRN2, NST4, ANA...	BEARSKIN 2, NAC domain contain...		Potri.019G066000 [exp]	1.00	0.9827
AT4G17340		TIP2;2, DELTA-T...	tonoplast intrinsic protein 2;...		Potri.001G157000 [exp]	1.41	0.9741	TIP2.6
AT1G15385			unknown protein		Potri.003G062300 [exp]	2.82	0.9715
AT3G52970		CYP76G1	"cytochrome P450, family 76, s...		Potri.005G030100 [exp]	3.46	0.9724	CYP76G5
AT1G64160			Disease resistance-responsive ...		Potri.001G096560 [exp]	4.89	0.9599
AT1G16310			Cation efflux family protein (...		Potri.010G172700 [exp]	4.89	0.9694
AT1G52790			2-oxoglutarate (2OG) and Fe(II...		Potri.001G176000 [exp]	5.00	0.9694	2OGox10
AT1G64160			Disease resistance-responsive ...		Potri.013G142401 [exp]	6.00	0.9556
AT1G24020		MLP423	MLP-like protein 423 (.1.2)		Potri.014G152800 [exp]	7.48	0.9524
AT1G52820			2-oxoglutarate (2OG) and Fe(II...		Potri.001G175800 [exp]	7.48	0.9692

Compare expression of checked genes

Potri.003G178900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.