Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G80630 494 / 1e-169 RNI-like superfamily protein (.1) AT4G15475 99 / 1e-21 F-box/RNI-like superfamily protein (.1) AT1G47056 81 / 7e-16 VFB1 VIER F-box proteine 1 (.1) AT5G01720 79 / 4e-15 RNI-like superfamily protein (.1) AT5G23340 77 / 9e-15 RNI-like superfamily protein (.1) AT3G58530 70 / 8e-13 RNI-like superfamily protein (.1) AT5G27920 69 / 6e-12 F-box family protein (.1) AT5G25350 68 / 9e-12 EBF2 EIN3-binding F box protein 2 (.1) AT2G25490 67 / 1e-11 FBL6, EBF1 EIN3-binding F box protein 1 (.1) AT3G07550 63 / 2e-10 RNI-like superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G013100 [exp] 96 / 1e-20 AT5G27920 631 / 0.0 F-box family protein (.1) Potri.016G128400 [exp] 92 / 2e-19 AT5G01720 712 / 0.0 RNI-like superfamily protein (.1) Potri.006G105400 [exp] 92 / 3e-19 AT5G01720 712 / 0.0 RNI-like superfamily protein (.1) Potri.018G027700 [exp] 91 / 9e-19 AT2G25490 820 / 0.0 EIN3-binding F box protein 1 (.1) Potri.006G254100 [exp] 86 / 3e-17 AT2G25490 795 / 0.0 EIN3-binding F box protein 1 (.1) Potri.019G123400 [exp] 82 / 3e-16 AT5G01720 604 / 0.0 RNI-like superfamily protein (.1) Potri.005G022600 [exp] 76 / 3e-14 AT5G27920 626 / 0.0 F-box family protein (.1) Potri.017G056400 [exp] 69 / 2e-12 AT3G07550 438 / 2e-153 RNI-like superfamily protein (.1.2) Potri.005G088800 [exp] 66 / 4e-11 AT5G23340 567 / 0.0 RNI-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041648 [exp] 656 / 0 AT1G80630 478 / 2e-163 RNI-like superfamily protein (.1) Lus10024070 [exp] 494 / 2e-171 AT1G80630 373 / 7e-124 RNI-like superfamily protein (.1) Lus10012764 [exp] 109 / 1e-24 AT4G15475 813 / 0.0 F-box/RNI-like superfamily protein (.1) Lus10029869 [exp] 102 / 6e-23 AT5G27920 441 / 5e-150 F-box family protein (.1) Lus10002913 [exp] 84 / 7e-17 AT2G25490 760 / 0.0 EIN3-binding F box protein 1 (.1) Lus10002014 [exp] 82 / 4e-16 AT2G25490 766 / 0.0 EIN3-binding F box protein 1 (.1) Lus10012214 [exp] 82 / 4e-16 AT5G01720 731 / 0.0 RNI-like superfamily protein (.1) Lus10013444 [exp] 77 / 1e-14 AT5G23340 591 / 0.0 RNI-like superfamily protein (.1) Lus10040998 [exp] 76 / 2e-14 AT5G23340 595 / 0.0 RNI-like superfamily protein (.1) Lus10036412 [exp] 75 / 4e-14 AT3G07550 417 / 4e-145 RNI-like superfamily protein (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.003G179100.1 pacid=42787399 polypeptide=Potri.003G179100.1.p locus=Potri.003G179100 ID=Potri.003G179100.1.v4.1 annot-version=v4.1 ATGAGAGATCGATCCACTGAATTACCACCAGAATGCTGGGAATTGATTTTCAATTTCCTTGACCACCACCGTCACTTCGAATCCCTCTCTCTAGTCTCCA CCCAATTCCTCTCTATCACCAATCACCTCCGTCGTTCCTTAATAATCTCCTCCCAAACATCCCCTTTCCTTCCAAATCTTTTCCAAAGATTCCCAAATCT CAAAGGAATTGAAATCCGTGAGTTCGACGGAGACCTCAATTTCCTTCTCCATCAAATCTCCAATTCAGGGTTGGACCTTGAATCCCTCACTCTCTCTAGC CAAGACCACTTTCCCTTGATGGGTTTGAGGGAGTTGGGGCTGAGAATGAGAAATTTAAGGAAATTGAGTTGCTCGGAAATGAATTGTTTACAAGATACTC ATCTTTTTGAAATTGGGAATTCGTTTCCATTGCTTGAAGATCTTAATATTAGTTTTCCGCAATATAATTCACGTTTTGATCCAATTGGGTCCTTGGATCT GCAGCGTTTTTCAGGGATTGTAACTGATGAAGGGATCATTCACTTGTCAATGAAGCTCAAGAGTTTGCTTAAGATTGATCTTTCTGGTAACCAATTCATT TCTGATAAATCACTTCAGTTTTTATCGGAGAATTGTTTGTTGTTAAGGGAAATAGTGATTCGTGAGTGTGATTTTATAACCCAGAATGGAATTGGTTCGG TTATGCGTAGATGCATTAATTTGAATTATATTTCGGTGGATGGAATTGGAATCCCTTCTATTGAACTGTATTTTCAAGAATCATTTGTGTTTGCGAAAAA TTTATCTGAAGTTAATCTCTCACATTCGTTTATCTCCGATGAATTGCTTTCTTCGATTGCAGACGCTTGTCTTCCACTAAAGAAACTGACTATCTGTCAT TGCTATGATTTCACATTTGTTGGAGTTTCTTATTTGTTGTATAAGTATCAGTTTCTTGAATACTTGGATCTTGAAGGAGCAAATTTTTTGACCGATGAGT CCATGATTGATTTGTGTGAGTTTCTTCGGAAGCTGACCTTTATAAACCTTAGTTTATGTTCTAAGCTGACGAGTTTGACCTTCTTTATGCTTGTAAGTAA CTGTTCCTTGTTGAAAGATGTCAAAATGGAGAGAACAAATTTAGGGGTGGAAGAGTTTCTGGTGGATTTTGGAATCAACCCCTGTGTCATGTCTCTAAAC TTGGCCAGGAATGAGAGTTTGAGTGATGAATGCATAAAAAAGATTGCATTTTGTTGCCCCAATTTGCAAGAGCTCAAGATCAGCCATTGCCCTACTATTA CAGAAGAAGGGATTAGAGAAGTTTTAAGGAGTTGTGGTGAAATAAGACATTTGGAGATGAATCATTGTTCAGGGATAAAGTGTCTGGATATAGACTTTGA ACTTCCTAAGTTGGAGGTTGTGCAAGCAGAAGGACCAGTACTGGATGATGAAGCATTGATGATGATTGCTAAGAGATGCCATGGATTGTTGCAGTTGGAC CTGGAAGGTTGCCTGAATGTGACGATAAAAGGGGTAAATGGAGTGGTGCAAAGCTGTATGAGATTGAGGGAGATAAATTTGAAGTGGTGTGATAATGTGA AAGTTGATATCATACCAAGAATGGTGTTTTCAAGGCCATCCCTGAGGAAAATTATCCCCCCATGTAGATTTATTCCTACTGATAAGCAGAATAAATTTTT TCTGCGTCATGGATGTTTAGTTTGCAAAGGCTAG
AA sequence Show only first row Show all	>Potri.003G179100.1 pacid=42787399 polypeptide=Potri.003G179100.1.p locus=Potri.003G179100 ID=Potri.003G179100.1.v4.1 annot-version=v4.1 MRDRSTELPPECWELIFNFLDHHRHFESLSLVSTQFLSITNHLRRSLIISSQTSPFLPNLFQRFPNLKGIEIREFDGDLNFLLHQISNSGLDLESLTLSS QDHFPLMGLRELGLRMRNLRKLSCSEMNCLQDTHLFEIGNSFPLLEDLNISFPQYNSRFDPIGSLDLQRFSGIVTDEGIIHLSMKLKSLLKIDLSGNQFI SDKSLQFLSENCLLLREIVIRECDFITQNGIGSVMRRCINLNYISVDGIGIPSIELYFQESFVFAKNLSEVNLSHSFISDELLSSIADACLPLKKLTICH CYDFTFVGVSYLLYKYQFLEYLDLEGANFLTDESMIDLCEFLRKLTFINLSLCSKLTSLTFFMLVSNCSLLKDVKMERTNLGVEEFLVDFGINPCVMSLN LARNESLSDECIKKIAFCCPNLQELKISHCPTITEEGIREVLRSCGEIRHLEMNHCSGIKCLDIDFELPKLEVVQAEGPVLDDEALMMIAKRCHGLLQLD LEGCLNVTIKGVNGVVQSCMRLREINLKWCDNVKVDIIPRMVFSRPSLRKIIPPCRFIPTDKQNKFFLRHGCLVCKG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G80630			RNI-like superfamily protein (...		Potri.003G179100 [exp]	0	1
AT2G01140		PDE345	PIGMENT DEFECTIVE 345, Aldolas...		Potri.008G125900 [exp]	3.16	0.7540
AT1G16300		GAPCP-2	glyceraldehyde-3-phosphate deh...		Potri.010G172400 [exp]	14.07	0.6662
AT3G61790			Protein with RING/U-box and TR...		Potri.002G171500 [exp]	16.24	0.6954
AT2G45430	AT-hook	AHL22	AT-hook motif nuclear-localize...		Potri.004G208600 [exp]	21.00	0.6449
AT2G43290		MSS3	multicopy suppressors of snf4 ...		Potri.007G128600 [exp]	38.57	0.6625
AT5G18520			Lung seven transmembrane recep...		Potri.006G214900 [exp]	41.26	0.6764
AT5G44370		PHT4;6	phosphate transporter 4;6 (.1)		Potri.009G168200 [exp]	49.98	0.6176
AT3G02740			Eukaryotic aspartyl protease f...		Potri.019G054900 [exp]	50.43	0.6450
AT5G67210		IRX15-L	IRX15-LIKE, Protein of unknown...		Potri.001G302600 [exp]	53.88	0.6849
AT3G51990			Protein kinase superfamily pro...		Potri.001G260800 [exp]	54.86	0.5937

Compare expression of checked genes

Potri.003G179100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.