Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G25220 425 / 1e-147 Protein kinase superfamily protein (.1.2) AT1G80640 421 / 5e-146 Protein kinase superfamily protein (.1.2) AT4G32000 416 / 4e-144 Protein kinase superfamily protein (.1.2) AT5G11020 411 / 4e-142 Protein kinase superfamily protein (.1) AT3G58690 263 / 2e-84 Protein kinase superfamily protein (.1) AT3G20530 249 / 4e-79 Protein kinase superfamily protein (.1) AT2G20300 258 / 6e-79 ALE2 Abnormal Leaf Shape 2, Protein kinase superfamily protein (.1) AT5G13160 248 / 8e-78 PBS1 avrPphB susceptible 1, Protein kinase superfamily protein (.1) AT1G20650 244 / 2e-77 ASG5 ALTERED SEED GERMINATION 5, Protein kinase superfamily protein (.1) AT5G02800 241 / 3e-76 CDL1 CDG1-like 1, Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G048500 [exp] 619 / 0 AT2G25220 465 / 1e-162 Protein kinase superfamily protein (.1.2) Potri.006G260100 [exp] 418 / 3e-144 AT5G11020 434 / 3e-150 Protein kinase superfamily protein (.1) Potri.018G022300 [exp] 410 / 3e-141 AT2G25220 402 / 1e-137 Protein kinase superfamily protein (.1.2) Potri.013G025700 [exp] 265 / 1e-84 AT1G54820 438 / 7e-152 Protein kinase superfamily protein (.1) Potri.014G143100 [exp] 262 / 4e-84 AT3G58690 573 / 0.0 Protein kinase superfamily protein (.1) Potri.001G421400 [exp] 258 / 1e-82 AT3G20530 587 / 0.0 Protein kinase superfamily protein (.1) Potri.005G036600 [exp] 258 / 7e-82 AT1G54820 434 / 4e-150 Protein kinase superfamily protein (.1) Potri.001G060800 [exp] 250 / 1e-78 AT5G13160 714 / 0.0 avrPphB susceptible 1, Protein kinase superfamily protein (.1) Potri.010G215100 [exp] 247 / 1e-78 AT5G18610 595 / 0.0 Protein kinase superfamily protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002328 [exp] 474 / 2e-167 AT4G32000 436 / 6e-152 Protein kinase superfamily protein (.1.2) Lus10026091 [exp] 474 / 1e-166 AT1G80640 435 / 5e-151 Protein kinase superfamily protein (.1.2) Lus10041026 [exp] 402 / 3e-138 AT4G32000 480 / 4e-169 Protein kinase superfamily protein (.1.2) Lus10001937 [exp] 401 / 8e-138 AT4G32000 468 / 6e-164 Protein kinase superfamily protein (.1.2) Lus10005345 [exp] 328 / 1e-108 AT2G25220 404 / 2e-138 Protein kinase superfamily protein (.1.2) Lus10029948 [exp] 268 / 5e-85 AT1G54820 469 / 1e-162 Protein kinase superfamily protein (.1) Lus10004461 [exp] 260 / 5e-82 AT1G54820 465 / 4e-161 Protein kinase superfamily protein (.1) Lus10033606 [exp] 253 / 2e-80 AT3G58690 606 / 0.0 Protein kinase superfamily protein (.1) Lus10040050 [exp] 250 / 1e-79 AT3G20530 555 / 0.0 Protein kinase superfamily protein (.1) Lus10017647 [exp] 250 / 2e-79 AT3G58690 597 / 0.0 Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Potri.003G179500.7 pacid=42787476 polypeptide=Potri.003G179500.7.p locus=Potri.003G179500 ID=Potri.003G179500.7.v4.1 annot-version=v4.1 ATGTGGGCGTTGTTAAGTACATCTTTGTCTTTCTTGCTTGGCACCAGACCTGAGCCAACTCTTTTCTCCACTTCTGGCTCCCTGCTTGCTAGCAAAGACA ATCCCATTTCTGTTTTCTCTTCAAAAATGGAAGATCAATCTCCAATGTTGTTTCTCTCATGTTGCTGGATCTGTAGACTGAAAAAATCAAGGACATGCAG TGCCAAAAGTAAAGGCAATGATGTTCCGGTTGTGGATAAATTAAATTCCTTGAGGATGGCTGAGAAGAAGGGTTCAGTTGCTGTTATAGAATATCATTTG CTGCAAGCTGCAACAAACAATTTCCAGGAAGTTAATGTTCTGGGTGAAGGTGGTCGTGGATGTTTGTATAAAGCTTGTTTCAGTGAAAAACTCCTTGCAG CAGTGAGGAGATTTGAAGGTGAAGAACAGGACATTGAAAGAGAATTTGAGAACGAGCTGAACTGGTTAACGAAAATTCATCATCAAAACATAATTTCTCT TCTGGGTTACTGCATTCATGGTGAAACAAGGTTTCTCGTGTATGAAATGATGCAAAATGGGTCTTTGGAAAGTCAATTGCATGGGCCAACACATGGATCG GCATTAACTTGGAATCTGCGAATGAAAATTGCTGTTGATGTTGCAAGGGGACTAGAGTATCTTCATGAGCATTGCAATCCTCCTGTTGTCCATAGAGATC TGAAGTCATCTAATATTCTTCTCGATTCCAACTTCAATGCAAAGCTTTCGGACTTTGGCCTTGCTGTAGCTTGTGGTATCCAAAACAAGTACGTAAAGCT TTCAGGAACTTTAGGTTATGTGGCACCAGAGTACCTTTTGGATGGCAAACTAACTGATAAAAGTGATGTCTATGCTTTTGGAGTTCTCCTTCTGGAACTC CTGATAGGAAGAAAACCAGTGGAAAAGATGTCTCCGGATCATTTTCAGTTCATAGTCTCATGGGCCATGCCTCGGCTCGCTGACAGATCAAAGCTTCCCA ACGTTGTGGATCCTGTTATCAAAGACACTATGAATTTAAAACACTTATACCAGGTAGCTGCAGTGGCAGTACTATGCGTGCAACAAGAACCAAGTTACAG GCCATTGATAACAGATGTCCTGCACTCTCTCATCCCTCTTGTACCTCTTGAGCTTGGAGGGTCACTGAGAATTACAGGACCTGTTCCTCTTGCCCTGCCT TCTCTCTGA
AA sequence Show only first row Show all	>Potri.003G179500.7 pacid=42787476 polypeptide=Potri.003G179500.7.p locus=Potri.003G179500 ID=Potri.003G179500.7.v4.1 annot-version=v4.1 MWALLSTSLSFLLGTRPEPTLFSTSGSLLASKDNPISVFSSKMEDQSPMLFLSCCWICRLKKSRTCSAKSKGNDVPVVDKLNSLRMAEKKGSVAVIEYHL LQAATNNFQEVNVLGEGGRGCLYKACFSEKLLAAVRRFEGEEQDIEREFENELNWLTKIHHQNIISLLGYCIHGETRFLVYEMMQNGSLESQLHGPTHGS ALTWNLRMKIAVDVARGLEYLHEHCNPPVVHRDLKSSNILLDSNFNAKLSDFGLAVACGIQNKYVKLSGTLGYVAPEYLLDGKLTDKSDVYAFGVLLLEL LIGRKPVEKMSPDHFQFIVSWAMPRLADRSKLPNVVDPVIKDTMNLKHLYQVAAVAVLCVQQEPSYRPLITDVLHSLIPLVPLELGGSLRITGPVPLALP SL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G25220			Protein kinase superfamily pro...		Potri.003G179500 [exp]	0	1
AT3G17640			Leucine-rich repeat (LRR) fami...		Potri.004G001000 [exp]	2.44	0.9023
AT1G30700			FAD-binding Berberine family p...		Potri.011G158300 [exp]	3.74	0.8647
AT5G64440		ATFAAH	fatty acid amide hydrolase (.1...		Potri.005G070300 [exp]	5.47	0.8517
AT5G03760		ATCSLA9, RAT4, ...	RESISTANT TO AGROBACTERIUM TRA...		Potri.006G116900 [exp]	8.48	0.8640
AT4G31590		ATCSLC5, ATCSLC...	CELLULOSE-SYNTHASE LIKE C5, Ce...		Potri.006G270900 [exp]	12.64	0.8296	Pt-ATCSLC05.4
AT5G65470			O-fucosyltransferase family pr...		Potri.007G011000 [exp]	13.74	0.7968
AT5G03260		LAC11	laccase 11 (.1)		Potri.009G102700 [exp]	14.28	0.7856
AT2G34770		ATFAH1, FAH1	ARABIDOPSIS FATTY ACID HYDROXY...		Potri.001G463800 [exp]	17.43	0.8087	FAH1.2
AT1G21340	DOF	AtDof1,2	Dof-type zinc finger DNA-bindi...		Potri.002G070700 [exp]	17.66	0.8151
AT5G46290		KAS1, KAS I, KA...	KETOACYL-ACP SYNTHASE 1, 3-ket...		Potri.003G142000 [exp]	20.17	0.8354

Compare expression of checked genes

Potri.003G179500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.