Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G30230 42 / 7e-05 unknown protein AT1G06980 40 / 0.0004 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G048400 [exp] 271 / 1e-93 ND / Potri.002G242400 [exp] 79 / 3e-17 AT1G06980 45 / 9e-06 unknown protein Potri.010G046225 [exp] 64 / 2e-12 ND / Potri.002G217100 [exp] 62 / 2e-11 ND / Potri.008G186700 [exp] 56 / 2e-09 AT5G50090 41 / 1e-04 unknown protein Potri.014G170000 [exp] 44 / 2e-05 ND / Potri.019G123900 [exp] 39 / 0.0006 AT2G30230 159 / 3e-50 unknown protein Potri.013G153100 [exp] 39 / 0.0009 AT2G30230 189 / 5e-62 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002327 [exp] 108 / 2e-29 AT1G29195 47 / 1e-06 unknown protein Lus10026092 [exp] 107 / 7e-29 ND 42 / 5e-05 Lus10025927 [exp] 83 / 1e-19 AT1G06980 43 / 4e-05 unknown protein Lus10038171 [exp] 77 / 2e-17 AT1G06980 46 / 2e-06 unknown protein Lus10020386 [exp] 76 / 3e-16 AT1G06980 44 / 3e-05 unknown protein Lus10009561 [exp] 74 / 6e-16 AT1G06980 44 / 1e-05 unknown protein Lus10006211 [exp] 64 / 1e-12 AT1G06980 39 / 9e-04 unknown protein Lus10036859 [exp] 63 / 3e-12 AT1G06980 41 / 1e-04 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF14009 [poplar] [flax] DUF4228 Domain of unknown function (DUF4228)
Representative CDS sequence Show only first row Show all	>Potri.003G179600.3 pacid=42784886 polypeptide=Potri.003G179600.3.p locus=Potri.003G179600 ID=Potri.003G179600.3.v4.1 annot-version=v4.1 ATGGTAATACCAAGCTGCATCTGCACTAATAGCACCAAGAATATGCTTGTTAAAATTGTTCATCCCGGAGGTCACGTAGAGCTCCATGATAGGCCTGTTC TTGCAGAAGAGGTCATGCTTCGGAACCCAAGATGCATAGTCGCCTATCCGCATGTGTTCCGGCAGCCTTGGGCTATTGTTGCACCAGACACCATGCTACT GCTTGGTCAGAAGTTCTATGTCGTTCCTATAAACACAATCAGAAAGCTTCAGCGTAGGTCCATCACAAGATCTCAATCTCCAATCAATGATGTCCGAGCC AGCAAGACCCCTAACAACGATGAAAGGGGCAGTGATATCTCATCCAGTTGCTGGTATTTTATCAACAAGAACATGAAGTCACCGTGTCCTTGCTTACACA GAGACGACGATGAGAGAGCAAACACCACTGGAACAAACATCGATAGTAAAGCCAACACTCTTGATACAAGTGAGGAAACAAAATCATCAAGCAGCATTGG GTGTTCTGAGACCAAGGATTGTGCCAGGAAGAGAAGAAAGGAGATGACAACAGGATCACCCAACAGATTTACATCTCTTGATCAGTGGCAACCAAATCTA GACAGCATTGTCGAAGAACATCAAAACAAATAG
AA sequence Show only first row Show all	>Potri.003G179600.3 pacid=42784886 polypeptide=Potri.003G179600.3.p locus=Potri.003G179600 ID=Potri.003G179600.3.v4.1 annot-version=v4.1 MVIPSCICTNSTKNMLVKIVHPGGHVELHDRPVLAEEVMLRNPRCIVAYPHVFRQPWAIVAPDTMLLLGQKFYVVPINTIRKLQRRSITRSQSPINDVRA SKTPNNDERGSDISSSCWYFINKNMKSPCPCLHRDDDERANTTGTNIDSKANTLDTSEETKSSSSIGCSETKDCARKRRKEMTTGSPNRFTSLDQWQPNL DSIVEEHQNK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
					Potri.003G179600 [exp]	0	1
AT1G66350	GRAS	RGL1	RGA-like 1 (.1)		Potri.010G143400 [exp]	11.95	0.9493
AT5G49350			Glycine-rich protein family (....		Potri.013G158300 [exp]	19.79	0.9442
AT3G28345		MDR13, ABCB15	multi-drug resistance 13, ATP-...		Potri.006G074101 [exp]	22.91	0.9426
AT3G25070		RIN4	RPM1 interacting protein 4 (.1...		Potri.011G022000 [exp]	23.28	0.8383
AT3G17675			Cupredoxin superfamily protein...		Potri.013G054500 [exp]	26.00	0.9409
					Potri.005G204000 [exp]	26.55	0.9059
					Potri.014G081800 [exp]	32.17	0.9409
AT5G24090		ATCHIA	chitinase A (.1)		Potri.014G091700 [exp]	35.58	0.9406	CHI3.4
AT3G09270		ATGSTU8	glutathione S-transferase TAU ...		Potri.013G072400 [exp]	36.55	0.9399
AT5G24090		ATCHIA	chitinase A (.1)		Potri.014G091600 [exp]	42.63	0.9389	Pt-CHI3.6

Compare expression of checked genes

Potri.003G179600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.