Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G80650 86 / 4e-21 RTL1 RNAse THREE-like protein 1 (.1) AT5G20320 82 / 3e-18 DCL4, ATDCL4 dicer-like 4 (.1.2) AT4G00420 73 / 2e-16 Double-stranded RNA-binding domain (DsRBD)-containing protein (.1), Double-stranded RNA-binding domain (DsRBD)-containing protein (.2), Double-stranded RNA-binding domain (DsRBD)-containing protein (.3) AT1G01040 42 / 0.0001 SIN1, EMB76, EMB60, CAF, ASU1, SUS1, DCL1, ATDCL1 SHORT INTEGUMENTS 1, EMBRYO DEFECTIVE 76, EMBRYO DEFECTIVE 60, CARPEL FACTORY, ABNORMAL SUSPENSOR 1, dicer-like 1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G188800 [exp] 80 / 1e-17 AT5G20320 1733 / 0.0 dicer-like 4 (.1.2) Potri.002G181400 [exp] 42 / 0.0002 AT1G01040 2835 / 0.0 SHORT INTEGUMENTS 1, EMBRYO DEFECTIVE 76, EMBRYO DEFECTIVE 60, CARPEL FACTORY, ABNORMAL SUSPENSOR 1, dicer-like 1 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019587 [exp] 86 / 2e-19 AT5G20320 556 / 0.0 dicer-like 4 (.1.2) Lus10024106 [exp] 73 / 5e-16 AT4G00420 68 / 2e-14 Double-stranded RNA-binding domain (DsRBD)-containing protein (.1), Double-stranded RNA-binding domain (DsRBD)-containing protein (.2), Double-stranded RNA-binding domain (DsRBD)-containing protein (.3) Lus10030177 [exp] 44 / 4e-05 AT1G01040 1138 / 0.0 SHORT INTEGUMENTS 1, EMBRYO DEFECTIVE 76, EMBRYO DEFECTIVE 60, CARPEL FACTORY, ABNORMAL SUSPENSOR 1, dicer-like 1 (.1.2) Lus10005141 [exp] 42 / 9e-05 AT1G01040 569 / 0.0 SHORT INTEGUMENTS 1, EMBRYO DEFECTIVE 76, EMBRYO DEFECTIVE 60, CARPEL FACTORY, ABNORMAL SUSPENSOR 1, dicer-like 1 (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.003G179700.4 pacid=42786336 polypeptide=Potri.003G179700.4.p locus=Potri.003G179700 ID=Potri.003G179700.4.v4.1 annot-version=v4.1 ATGAGCAATATCTTTGTTTTATGGAATCTTTATTTATCTACCTGGTTAAATATTATTAAGAAAGACAAGCCAACTATGAAGTATGTTGTAGAAGGTGCTA GGGCAGGACCCAAAGAGGGGCTGAAGCCGGCAAAACAATTTGATGATGAAGCAAACACAACAGCAGATTTATTGGCAGATATTAACCCATCACAAATCAT CAAGACTGGAGATGACTCCAGCACCATAAAGAACACAACCAAGGTGGGTGAAATTAGCAAGGATGATAAAAACTCTCATAACGACTCAGGTGGGCCAAAG ATATCTGCCAAATCACAATTGCTGGAGACTTTAGCTGCAAACAAGTGGAAACCCCCTTTATTTGAATGCTTCAAGGAAGAAGGACCTTGCCACAAGAAAT TGTTTACCTACAAGGTTGCAATTCGGATTGAAGGAGAAGCATCGACTGTACTGGAGTGTTTTGGTTATCCTAAACCAACAAAGAAAGCAGCAGCTGAACA TGCAGCTGAAGGGGCATTGTGGTACTTGAAGCATTTGGGTTATTTTCCAATCAAGAAGGTTAAGAGGAAAAAATAA
AA sequence Show only first row Show all	>Potri.003G179700.4 pacid=42786336 polypeptide=Potri.003G179700.4.p locus=Potri.003G179700 ID=Potri.003G179700.4.v4.1 annot-version=v4.1 MSNIFVLWNLYLSTWLNIIKKDKPTMKYVVEGARAGPKEGLKPAKQFDDEANTTADLLADINPSQIIKTGDDSSTIKNTTKVGEISKDDKNSHNDSGGPK ISAKSQLLETLAANKWKPPLFECFKEEGPCHKKLFTYKVAIRIEGEASTVLECFGYPKPTKKAAAEHAAEGALWYLKHLGYFPIKKVKRKK

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G80650		RTL1	RNAse THREE-like protein 1 (.1...		Potri.003G179700 [exp]	0	1
AT1G80610			unknown protein		Potri.017G053900 [exp]	3.87	0.7004
AT5G13250			RING finger protein (.1)		Potri.003G164800 [exp]	7.00	0.7369
AT5G03250			Phototropic-responsive NPH3 fa...		Potri.008G038600 [exp]	12.16	0.7197
AT2G44730	Trihelix		Alcohol dehydrogenase transcri...		Potri.003G083800 [exp]	14.69	0.6941
AT2G20470			AGC (cAMP-dependent, cGMP-depe...		Potri.002G036200 [exp]	16.00	0.7058
AT3G60520			unknown protein		Potri.002G142600 [exp]	25.37	0.6789
AT2G36450	AP2_ERF	HRD	HARDY, Integrase-type DNA-bind...		Potri.016G018600 [exp]	25.78	0.6975
AT3G47890			Ubiquitin carboxyl-terminal hy...		Potri.012G071900 [exp]	26.15	0.6715
AT2G43250			unknown protein		Potri.017G035700 [exp]	28.74	0.5978
AT4G37880			LisH/CRA/RING-U-box domains-co...		Potri.015G128600 [exp]	29.24	0.6713

Compare expression of checked genes

Potri.003G179700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.