Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	HA1.4
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G80660 1464 / 0 AHA9 H\(+\)-ATPase 9, H\(+\)-ATPase 9, H(+)-ATPase 9 (.1), H(+)-ATPase 9 (.2) AT3G42640 1439 / 0 AHA8 H\(+\)-ATPase 8, H\(+\)-ATPase 8, H(+)-ATPase 8 (.1) AT4G30190 1426 / 0 PMA2, AHA2 PLASMA MEMBRANE PROTON ATPASE 2, H\(+\)-ATPase 2, H\(+\)-ATPase 2, H(+)-ATPase 2 (.1), H(+)-ATPase 2 (.2) AT2G07560 1424 / 0 AHA6 H\(+\)-ATPase 6, H\(+\)-ATPase 6, H(+)-ATPase 6 (.1) AT2G24520 1416 / 0 AHA5 H\(+\)-ATPase 5, H\(+\)-ATPase 5, H(+)-ATPase 5 (.1) AT2G18960 1412 / 0 OST2, PMA, AHA1 PLASMA MEMBRANE PROTON ATPASE, OPEN STOMATA 2, H\(+\)-ATPase 1, H\(+\)-ATPase 1, H(+)-ATPase 1 (.1) AT5G57350 1394 / 0 AHA3, ATAHA3 H\(+\)-ATPase 3, ARABIDOPSIS THALIANA ARABIDOPSIS H\(+\)-ATPASE, H\(+\)-ATPase 3, H(+)-ATPase 3 (.1), H(+)-ATPase 3 (.2) AT3G47950 1391 / 0 AHA4 H\(+\)-ATPase 4, H\(+\)-ATPase 4, H(+)-ATPase 4 (.1) AT5G62670 1388 / 0 AHA11 H\(+\)-ATPase 11, H\(+\)-ATPase 11, H(+)-ATPase 11 (.1) AT3G60330 1245 / 0 AHA7 H\(+\)-ATPase 7, H\(+\)-ATPase 7, H(+)-ATPase 7 (.1), H(+)-ATPase 7 (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G090300 [exp] 1467 / 0 AT2G18960 1560 / 0.0 PLASMA MEMBRANE PROTON ATPASE, OPEN STOMATA 2, H\(+\)-ATPase 1, H\(+\)-ATPase 1, H(+)-ATPase 1 (.1) Potri.006G165900 [exp] 1466 / 0 AT4G30190 1576 / 0.0 PLASMA MEMBRANE PROTON ATPASE 2, H\(+\)-ATPase 2, H\(+\)-ATPase 2, H(+)-ATPase 2 (.1), H(+)-ATPase 2 (.2) Potri.006G275000 [exp] 1456 / 0 AT2G24520 1589 / 0.0 H\(+\)-ATPase 5, H\(+\)-ATPase 5, H(+)-ATPase 5 (.1) Potri.018G006000 [exp] 1456 / 0 AT2G24520 1554 / 0.0 H\(+\)-ATPase 5, H\(+\)-ATPase 5, H(+)-ATPase 5 (.1) Potri.006G005900 [exp] 1448 / 0 AT3G42640 1543 / 0.0 H\(+\)-ATPase 8, H\(+\)-ATPase 8, H(+)-ATPase 8 (.1) Potri.006G188600 [exp] 1445 / 0 AT3G42640 1602 / 0.0 H\(+\)-ATPase 8, H\(+\)-ATPase 8, H(+)-ATPase 8 (.1) Potri.018G112400 [exp] 1444 / 0 AT3G42640 1528 / 0.0 H\(+\)-ATPase 8, H\(+\)-ATPase 8, H(+)-ATPase 8 (.1) Potri.012G071600 [exp] 1392 / 0 AT5G62670 1637 / 0.0 H\(+\)-ATPase 11, H\(+\)-ATPase 11, H(+)-ATPase 11 (.1) Potri.015G066000 [exp] 1390 / 0 AT5G62670 1640 / 0.0 H\(+\)-ATPase 11, H\(+\)-ATPase 11, H(+)-ATPase 11 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024105 [exp] 1469 / 0 AT1G80660 1657 / 0.0 H\(+\)-ATPase 9, H\(+\)-ATPase 9, H(+)-ATPase 9 (.1), H(+)-ATPase 9 (.2) Lus10001631 [exp] 1441 / 0 AT4G30190 1679 / 0.0 PLASMA MEMBRANE PROTON ATPASE 2, H\(+\)-ATPase 2, H\(+\)-ATPase 2, H(+)-ATPase 2 (.1), H(+)-ATPase 2 (.2) Lus10026946 [exp] 1429 / 0 AT2G24520 1634 / 0.0 H\(+\)-ATPase 5, H\(+\)-ATPase 5, H(+)-ATPase 5 (.1) Lus10003259 [exp] 1381 / 0 AT5G62670 1797 / 0.0 H\(+\)-ATPase 11, H\(+\)-ATPase 11, H(+)-ATPase 11 (.1) Lus10042183 [exp] 1381 / 0 AT5G62670 1797 / 0.0 H\(+\)-ATPase 11, H\(+\)-ATPase 11, H(+)-ATPase 11 (.1) Lus10026224 [exp] 1354 / 0 AT2G24520 1509 / 0.0 H\(+\)-ATPase 5, H\(+\)-ATPase 5, H(+)-ATPase 5 (.1) Lus10040166 [exp] 1287 / 0 AT3G60330 1533 / 0.0 H\(+\)-ATPase 7, H\(+\)-ATPase 7, H(+)-ATPase 7 (.1), H(+)-ATPase 7 (.2) Lus10004370 [exp] 1287 / 0 AT3G60330 1529 / 0.0 H\(+\)-ATPase 7, H\(+\)-ATPase 7, H(+)-ATPase 7 (.1), H(+)-ATPase 7 (.2) Lus10042445 [exp] 1272 / 0 AT1G80660 1490 / 0.0 H\(+\)-ATPase 9, H\(+\)-ATPase 9, H(+)-ATPase 9 (.1), H(+)-ATPase 9 (.2) Lus10019593 [exp] 1256 / 0 AT3G42640 1455 / 0.0 H\(+\)-ATPase 8, H\(+\)-ATPase 8, H(+)-ATPase 8 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00122 [poplar] [flax] E1-E2_ATPase E1-E2 ATPase CL0137 [poplar] [flax] HAD PF00702 [poplar] [flax] Hydrolase haloacid dehalogenase-like hydrolase
Representative CDS sequence Show only first row Show all	>Potri.003G179800.1 pacid=42786387 polypeptide=Potri.003G179800.1.p locus=Potri.003G179800 ID=Potri.003G179800.1.v4.1 annot-version=v4.1 ATGTGGAACCCACTCTCATGGGTCATGGAGGGTGCTGCTGTCGTGGCCATTGTTCTTGCAAACGGACAGGGCAAGCCACCAGACTGGCAAGACTTTGTGG GTATTGTGGTATTGCTTCTTATCAACTCAACTATAAGTTTCGTAGAAGAAAATAGTGCAGGCAACGCTGCAGCAGCTCTTATGGCAGGTCTCGCCCTGAA AACCAAGGTTTTGAGAGATGGGAGGTGGATCGAGCATGAGGCTGCTGTCTTGGTTCCGGGAGATGTAATCAGCATAAAGCTGGGGGACATTATACCAGCA GATGCTCGTCTGCTGGAGGGTGACCCGCTTAAAATTGATCAGTCTGCTCTCACTGGTGAGTCTTTGCCAGTTACAAAGAAACCAGGTGATGAAATCTTCT CTGGGTCTACTTGCAAGCATGGTGAGATTGAAGCTGTTGTGATTGCCACTGGGGTGCACACCTTTTTTGGTAAAGCTGCTCATCTCGTAGACAGCACCAA TCAAGTGGGGCATTTCCAAAAGGTGTTGACATCCATTGGAAACTTCTGCATAGTCTCCATTGTAGTGGGAATAATCATAGAGGCAATCGTAATGTGGCCA ATTCAGAGCCGCAAGTACCGGGATGGTATTGACAATATTTTGGTGCTTCTTATTGGAGGAATCCCTATAGCCATGCCAACCGTGTTGTCAGTGACAATGG CCATTGGATCCCACCGGCTTTCACAGCAAGGTGCTATCACAAAGAGGATGACAGCTATTGAAGAAATGGCTGGAATGGATGTATTATGCAGTGACAAGAC CGGCACCCTCACTCTTAACAAACTTACAGTAGACAAGAGCTTGGTCGAGGTATTTGCTAACGATGTTGACCAAGACAATGTGATTTTACTGGGCGCTAGG GCCTCCAGGATCGAGAATCAGGATGCTATCGATGCTTGTATTGTTGGGATGTTGGCGGATCCCAAGGAGGCCAGAGCAAGCATCACTGAGGTTCATTTCT TGCCATTTAATCCAGTGGAAAAGCGTACAGCTATAACATATATCGACCCTGATGGCAATTGGCACCGAGTTAGCAAAGGCGCCCCCGAGCAGATCATTGC ACTGTGCAACCTCCGGGAAGATGTAGCAAGAAAAGCTCATGCCATCATTGATAAGTATGCCGAACGAGGCCTCCGCTCCCTGGCTGTTTGTAGACAAATT GTCCCAGAAAAAACCAAGGAAAGCCCTGGAGGACCATGGGAATTTGTGGGCCTGTTGCCTCTCTTTGATCCTCCTAGGCATGACAGTGCAGAGACCATTA CTCGTGCCCTCAACCTAGGTGTCAATGTTAAGATGATCACTGGTGATCAGCTGGCAATTGGCAAGGAGACTGGTCGGAGGCTTGGAATGGGAACCAACAT GTATCCCTCTTCTGCCCTCCTTGGGCAGCACCCGGATGAGTCAACTGCAGCCCTTCCTGTTGACGAGCTCATTGAAAAGGCTGATGGCTTTGCTGGTGTC TTCCCTGAGCACAAGTATGAGATTGTGAAGAGGCTGCAAGCTAGGAAGCATGTTTGCGGGATGACTGGAGATGGTGTAAATGACGCGCCTGCTCTGAAGA AGGCAGACATCGGAATTGCAGTGGCCGATGCAACTGATGCAGCACGTGGTGCATCTGACATTGTCCTGACAGAGCCAGGATTGAGTGTCATAGTGAGTGC TGTGTTAACAAGCAGAGCCATTTTCCAGAGAATGAAGAATTACACCATCTATGCAGTGACTATAACCATCCGTATTGTGCTGGGTTTTCTGCTCCTCGCT CTAATTTGGAAATTTGATTTTTCTCCTTTCATGGTTCTGATAATTGCCATACTTAATGATGGGACAATCATGACTATTTCCAAAGACAGAGTGAAACCAT CTCCACTTCCTGATTCCTGGAAGCTTAAGGAGATCTTTGCTACTGGTGTCATTCTAGGCACCTACTTAGCTTTAATGACCGTTGTATTCTTCTGGATTGT ACACAGTTCTGACTTCTTCTCTGATAAATTTGGTGTTAGGTCCATCCGGAACAACCATTACGAGCTAACATCAGCTGTATACCTTCAAGTGAGTATTGTT AGCCAGGCACTCATTTTCGTTACTAGGTCCCGAAGCTGGTCTTATGTCGAACGCCCTGGAATTTACCTTTTGATTGCCTTTGTCCTGGCACAACTGATTG CGACAATCATCGCTGTGTATGCCAATTGGGGATTTGCGAGAATCCATGGAATTGGATGGGGATGGGCAGGTGTTATCTGGCTTTACAGCATCATCTTCTA CATCCCTCTTGATTTCCTCAAATTCATAATCCGCTATGCTCTAAGTAGCAAATCCTGGGATAATCTCCTCCAAAATAAGACAGCTTTCACCTCAAAGGAG GAGTACGGAAAACGAGAGAGGATGGCGCCATGGGCTGCTGATCATCTTACCATTCGTGGACTGCATCCTCCCGAAGGCTCAGAACTTTTCAATGATAAGA GCAACTACAGAGAGTTACATGATATCGCTGAACATGCCAAGAGGCGCGCTGAGGTCGCTCGGCTGAGGGAGCTTCACACGCTCAAGGGTCATGTGGAGTC AGTGGTGAAACTCAAGGGACTTGACATTGAGACCATTCAACAACACTACACTGTTTGA
AA sequence Show only first row Show all	>Potri.003G179800.1 pacid=42786387 polypeptide=Potri.003G179800.1.p locus=Potri.003G179800 ID=Potri.003G179800.1.v4.1 annot-version=v4.1 MWNPLSWVMEGAAVVAIVLANGQGKPPDWQDFVGIVVLLLINSTISFVEENSAGNAAAALMAGLALKTKVLRDGRWIEHEAAVLVPGDVISIKLGDIIPA DARLLEGDPLKIDQSALTGESLPVTKKPGDEIFSGSTCKHGEIEAVVIATGVHTFFGKAAHLVDSTNQVGHFQKVLTSIGNFCIVSIVVGIIIEAIVMWP IQSRKYRDGIDNILVLLIGGIPIAMPTVLSVTMAIGSHRLSQQGAITKRMTAIEEMAGMDVLCSDKTGTLTLNKLTVDKSLVEVFANDVDQDNVILLGAR ASRIENQDAIDACIVGMLADPKEARASITEVHFLPFNPVEKRTAITYIDPDGNWHRVSKGAPEQIIALCNLREDVARKAHAIIDKYAERGLRSLAVCRQI VPEKTKESPGGPWEFVGLLPLFDPPRHDSAETITRALNLGVNVKMITGDQLAIGKETGRRLGMGTNMYPSSALLGQHPDESTAALPVDELIEKADGFAGV FPEHKYEIVKRLQARKHVCGMTGDGVNDAPALKKADIGIAVADATDAARGASDIVLTEPGLSVIVSAVLTSRAIFQRMKNYTIYAVTITIRIVLGFLLLA LIWKFDFSPFMVLIIAILNDGTIMTISKDRVKPSPLPDSWKLKEIFATGVILGTYLALMTVVFFWIVHSSDFFSDKFGVRSIRNNHYELTSAVYLQVSIV SQALIFVTRSRSWSYVERPGIYLLIAFVLAQLIATIIAVYANWGFARIHGIGWGWAGVIWLYSIIFYIPLDFLKFIIRYALSSKSWDNLLQNKTAFTSKE EYGKRERMAPWAADHLTIRGLHPPEGSELFNDKSNYRELHDIAEHAKRRAEVARLRELHTLKGHVESVVKLKGLDIETIQQHYTV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G80660		AHA9	H\(+\)-ATPase 9, H\(+\)-ATPase...		Potri.003G179800 [exp]	0	1	HA1.4
					Potri.013G041350 [exp]	9.32	0.7305
AT1G46264	HSF	SCZ, AT-HSFB4	SCHIZORIZA, heat shock transcr...		Potri.014G027100 [exp]	53.78	0.6898	Pt-HSFB4.2
AT2G25185			Defensin-like (DEFL) family pr...		Potri.010G135666 [exp]	53.99	0.5545
AT1G29150		RPN6, ATS9	REGULATORY PARTICLE NON-ATPASE...		Potri.006G277900 [exp]	79.99	0.5639
					Potri.010G231366 [exp]	120.31	0.5786
					Potri.007G146700 [exp]	132.34	0.6034
AT2G42610		LSH10	LIGHT SENSITIVE HYPOCOTYLS 10,...		Potri.011G066400 [exp]	172.85	0.6098
					Potri.006G163201 [exp]	286.98	0.5457

Compare expression of checked genes

Potri.003G179800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.