Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G80670 590 / 0 RAE1 RNA export factor 1, Transducin/WD40 repeat-like superfamily protein (.1) AT1G15850 185 / 3e-58 Transducin/WD40 repeat-like superfamily protein (.1) AT3G19590 186 / 3e-56 BUB3.1 BUB \(BUDDING UNINHIBITED BY BENZYMIDAZOL\) 3.1, Transducin/WD40 repeat-like superfamily protein (.1) AT1G49910 182 / 2e-54 BUB3.2 BUB \(BUDDING UNINHIBITED BY BENZYMIDAZOL\) 3.2, Transducin/WD40 repeat-like superfamily protein (.1) AT1G69400 100 / 8e-24 Transducin/WD40 repeat-like superfamily protein (.1.2) AT1G11160 72 / 1e-13 Transducin/WD40 repeat-like superfamily protein (.1) AT5G08390 65 / 2e-11 Transducin/WD40 repeat-like superfamily protein (.1) AT5G23430 63 / 1e-10 Transducin/WD40 repeat-like superfamily protein (.1.2) AT3G18130 62 / 1e-10 RACK1C_AT receptor for activated C kinase 1C (.1) AT1G61210 63 / 2e-10 DWA3 DWD hypersensitive to ABA 3, Transducin/WD40 repeat-like superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G048100 [exp] 665 / 0 AT1G80670 583 / 0.0 RNA export factor 1, Transducin/WD40 repeat-like superfamily protein (.1) Potri.001G295100 [exp] 187 / 1e-56 AT3G19590 593 / 0.0 BUB \(BUDDING UNINHIBITED BY BENZYMIDAZOL\) 3.1, Transducin/WD40 repeat-like superfamily protein (.1) Potri.009G089200 [exp] 177 / 9e-53 AT3G19590 602 / 0.0 BUB \(BUDDING UNINHIBITED BY BENZYMIDAZOL\) 3.1, Transducin/WD40 repeat-like superfamily protein (.1) Potri.010G162700 [exp] 96 / 2e-22 AT1G69400 350 / 7e-121 Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.008G092100 [exp] 91 / 2e-20 AT1G69400 333 / 2e-114 Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.010G255400 [exp] 68 / 4e-12 AT5G08390 927 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.008G002300 [exp] 65 / 3e-11 AT5G08390 1006 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.011G045500 [exp] 64 / 7e-11 AT1G61210 723 / 0.0 DWD hypersensitive to ABA 3, Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.007G009500 [exp] 62 / 1e-10 AT3G49660 469 / 4e-168 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026095 [exp] 599 / 0 AT1G80670 632 / 0.0 RNA export factor 1, Transducin/WD40 repeat-like superfamily protein (.1) Lus10002323 [exp] 575 / 0 AT1G80670 608 / 0.0 RNA export factor 1, Transducin/WD40 repeat-like superfamily protein (.1) Lus10003954 [exp] 179 / 3e-53 AT3G19590 618 / 0.0 BUB \(BUDDING UNINHIBITED BY BENZYMIDAZOL\) 3.1, Transducin/WD40 repeat-like superfamily protein (.1) Lus10023814 [exp] 170 / 8e-50 AT3G19590 610 / 0.0 BUB \(BUDDING UNINHIBITED BY BENZYMIDAZOL\) 3.1, Transducin/WD40 repeat-like superfamily protein (.1) Lus10026051 [exp] 84 / 3e-18 AT1G69400 318 / 9e-109 Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10014343 [exp] 80 / 1e-16 AT1G69400 313 / 6e-106 Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10018458 [exp] 64 / 1e-10 AT1G11160 668 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10011224 [exp] 64 / 1e-10 AT1G11160 665 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10041007 [exp] 63 / 1e-10 AT5G23430 721 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10013452 [exp] 62 / 5e-10 AT1G50410 1003 / 0.0 SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [poplar] [flax] Beta_propeller PF00400 [poplar] [flax] WD40 WD domain, G-beta repeat
Representative CDS sequence Show only first row Show all	>Potri.003G180000.1 pacid=42787196 polypeptide=Potri.003G180000.1.p locus=Potri.003G180000 ID=Potri.003G180000.1.v4.1 annot-version=v4.1 ATGTCTGCTTTTGGTGCTGCCGCGACTGCTAATACAAACCCTAATAAATCCATCGAGGTTTCGCATCCTCCCAGTGACTCAGTTTCGAGTCTCTCTTTCA GTCCCAAAGCCAATTTTTTAGTTGCGACTTCTTGGGACAATCAGGTACGATGTTGGGAAATTACAAGGAATGGGACCAATGTAGGCAGTGTTGCCAAGGC TTCGATATCCCATGACCAACCAGTGTTGTGCTCAACTTGGAAGGATGATGGAACGACCGTCTTTTCTGGAGGGTGTGACAAGCAAGTTAAGATGTGGCCT TTGCTCTCTGGTGGTCAACCAGTAACTGTTGCGATGCATGACGCCCCTATCAAAGAGATTGCATGGATTCCAGAGATGAACTGCTTAGCCACAGGAAGTT GGGACAAAACCTTGAAGTACTGGGATTTAAGGCAGGCAAATCCAGTGCACACTCAGCAACTTGGTGAGCGCTGTTATGCAATGACGGTGCGGTATCCTTT GATGGTTGTTGGCACCGCAGACAGAAACATGATAGTTTATAACCTGCAAAGTCCTCAGACTGAGTTCAAGAAAATCGCTTCACCCTTGAAATATCAGACA AGATGTGTTGCAGCCTTTCCTGATCAACAAGGCTTCTTGGTCGGTTCAATTGAGGGAAGGGTTGGTGTACATCATCTGGATGAAGCTCAACAAAGCAAAA ACTTCACCTTCAAATGCCACAGAGATAACAATGAGATATACTCAGTCAACTCCTTGAACTTTCACCCAGTGCATCATACTTTTGCAACTGCTGGATCTGA TGGTTCTTTTAATTTTTGGGACAAAGATAGCAAGCAGAGACTCAAGGCCATGTTAAGATGCCCTCTACCAATACCCTGCAGTGCATTCAATAACGACGGC TCGATTTTTGCATACTCGGTGTGTTATGATTGGAGCAAGGGTGCTGAAAATCACAACCCAGCGACAGCTAAGACCTACATCTATCTGCATTTACCACAGG AATCTGAAGTCAAAGGAAAGCCAAGGGCTGGAGGGACGACTAGAAGGTGA
AA sequence Show only first row Show all	>Potri.003G180000.1 pacid=42787196 polypeptide=Potri.003G180000.1.p locus=Potri.003G180000 ID=Potri.003G180000.1.v4.1 annot-version=v4.1 MSAFGAAATANTNPNKSIEVSHPPSDSVSSLSFSPKANFLVATSWDNQVRCWEITRNGTNVGSVAKASISHDQPVLCSTWKDDGTTVFSGGCDKQVKMWP LLSGGQPVTVAMHDAPIKEIAWIPEMNCLATGSWDKTLKYWDLRQANPVHTQQLGERCYAMTVRYPLMVVGTADRNMIVYNLQSPQTEFKKIASPLKYQT RCVAAFPDQQGFLVGSIEGRVGVHHLDEAQQSKNFTFKCHRDNNEIYSVNSLNFHPVHHTFATAGSDGSFNFWDKDSKQRLKAMLRCPLPIPCSAFNNDG SIFAYSVCYDWSKGAENHNPATAKTYIYLHLPQESEVKGKPRAGGTTRR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G80670		RAE1	RNA export factor 1, Transduci...		Potri.003G180000 [exp]	0	1
AT5G39600			unknown protein		Potri.012G106900 [exp]	1.73	0.8504
AT5G65270		AtRABA4a	RAB GTPase homolog A4A (.1)		Potri.005G073000 [exp]	7.74	0.7874	Pt-ATGB3.3
AT3G56210			ARM repeat superfamily protein...		Potri.008G075600 [exp]	8.83	0.8191
AT4G16420		PRZ1, ADA2B	PROPORZ1, homolog of yeast ADA...		Potri.016G007600 [exp]	10.19	0.7510
AT3G19760		EIF4A-III	eukaryotic initiation factor 4...		Potri.007G070000 [exp]	18.73	0.7785
AT2G26990		COP12, ATCSN2, ...	FUSCA 12, CONSTITUTIVE PHOTOMO...		Potri.001G222700 [exp]	20.49	0.7421	FUS12.2
AT2G18465			Chaperone DnaJ-domain superfam...		Potri.019G010000 [exp]	28.98	0.7242
AT1G48430			Dihydroxyacetone kinase (.1)		Potri.012G041100 [exp]	36.27	0.7100
AT4G15770			RNA binding (.1)		Potri.008G209600 [exp]	47.32	0.7454
AT5G14105			unknown protein		Potri.017G066388 [exp]	51.87	0.7254

Compare expression of checked genes

Potri.003G180000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.