Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	PRE.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G80680 1273 / 0 NUP96, SAR3, MOS3, PRE PRECOCIOUS, MODIFIER OF SNC1,3, SUPPRESSOR OF AUXIN RESISTANCE 3 (.1) AT1G10390 194 / 2e-50 Nucleoporin autopeptidase (.1.2) AT1G59660 160 / 9e-40 Nucleoporin autopeptidase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G453200 [exp] 180 / 5e-46 AT1G10390 684 / 0.0 Nucleoporin autopeptidase (.1.2) Potri.011G148800 [exp] 179 / 7e-46 AT1G10390 606 / 0.0 Nucleoporin autopeptidase (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007993 [exp] 1482 / 0 AT1G80680 1280 / 0.0 PRECOCIOUS, MODIFIER OF SNC1,3, SUPPRESSOR OF AUXIN RESISTANCE 3 (.1) Lus10040555 [exp] 689 / 0 AT1G80680 605 / 0.0 PRECOCIOUS, MODIFIER OF SNC1,3, SUPPRESSOR OF AUXIN RESISTANCE 3 (.1) Lus10008288 [exp] 169 / 2e-42 AT1G10390 1013 / 0.0 Nucleoporin autopeptidase (.1.2) Lus10033254 [exp] 168 / 4e-42 AT1G10390 1023 / 0.0 Nucleoporin autopeptidase (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0661 [poplar] [flax] Gain PF04096 [poplar] [flax] Nucleoporin2 Nucleoporin autopeptidase CL0661 [poplar] [flax] PF12110 [poplar] [flax] Nup96 Nuclear protein 96
Representative CDS sequence Show only first row Show all	>Potri.003G180100.1 pacid=42784528 polypeptide=Potri.003G180100.1.p locus=Potri.003G180100 ID=Potri.003G180100.1.v4.1 annot-version=v4.1 ATGGCGTCTCCTTCTCTCCTCCCGGTTGCCGGGAGTTCAAATGAGATTCCAAGTATAAGAAGCAATCTTTCTTTTGGCACTTCATGTGAACTTGATTTTG AAGTAGAAACTTTAAATTCAGAGGGTCAATACAAGAAAAGAAGAACGTCTCTAAAAAGTGAGCCACGGTGCGAGGATTTCAGAATGGTCGAAGCTTTGTT GCCCACATTGCGTTCAGTAGATTATTATATGGAACCTTGTTTGATGGACCTGGCTGCTGGGGAAGTTGTGGATCCTGGATATTGCAGTCGGGTCCTGGAT TTCACTGTTGGAAGGTTTGGTTATGGACGTGTTAAGTTTCTCGGGAAGACTGATGTTAGGAGGTTAAATTTAGATCAGATTGTGAAGTTTAATAGGCATG AAGTAATTGTATATGAAGATGAAAATGCTAAGCCTATGGTTGGTCAGGGCCTTAATAAGCCCGCTGAAGTTTCTTTGACTTTAAAACTAAAATTGTTGGA TTTTAACAAGGGACGAATCAATGACGTGGTAGAGAAATTGAGGGAGAGTATGGAGAGACAGGGAGCTGAATTTATTTCATTTGATCCTGTAATTGGAGAA TGGAAGTTCTTGGTTTGCCATTTTAGCAGATTTGGATTGAGTGGCGATGATGAAGAAGATATCACAATGGATGATGCGGCAGAAGTTCAAGATCCTGCTG AGATGAAAGGTGGTGAGATTGTTGATATGGATGAAGAAACCCCAGAAGAAGTAGAAGCTAATGAACCAGTTCTTTATCATTCTCTTCCTGCACATCTTGG TCTTGACCCAGTAAGAATGAATGAAATGAGGACATGGATGTTTCCTGATGATGAAGAAGAAGTTGTTGAGGATTTGATTGGTCTACGTCAGAAATTTCCT TACAATAAAGAAAGCATTGGGTCTCCTCTACAGAATTCCACTCAGAGGATGAGCCATAGAGCTAGTTCGCCTGTCATGAGGAAAACACCTTTAGCACTGC TTGAGTACAAACCTGGCAGTTTCGATTCCAGCTCCCCCGGAACCATTCTGTTGGCCCAACAACATAAGGGCCTGACTTCAAAGATGATGAAGGGAGTAGG CTTTACGCTGAACCTGGAGCATGAAACACCAATAAGTGGAAGCCATTCTTGCAACGTTGTTGATGCAGGTTTATTCATGGGCCGTTCCTTTCGTGTTGGT TGGGGCCCAAATGGAGTCCTTGTTCATTCTGGTGCTCCAGTTGGAGGTAATAATTCTCAGAGGTTTCTATCTTCTATTATCCATGTAGAGAAGGTCGCGC TTGACAAAGTGGTCAGAGATGAAAATAATAAATCCAGAAAGGAACTAGTTGACTTTTCTTTTGACTCACCTTTGAATCTCCACAAGGCAATAAACCGGGA AACAAAAGAAGTTGAGATAGGTTCATTTAAACTGAAGCTTCAAAAAGTTGTTTCTAATCGCTTAATGCTTTCAGAAATTTGTCGGAGTTATATAGACATT GTTGAGAGGCAGCTGGAGGTTCCATGGCTTTCATCCTCTGCGCGATTGGTTTTGATGCACCAAGTAATGATCTGGGAGTTGATAAAAGTACTTTTTTCTG AAAGGGAAAATAGTGGACAGTCAAAATCTGTGGGTGCTGACAATGAGGAAGATATGATGCAGGATTTGAAAGAAAGTTCTTTGGAAGTTGACCAAGAAGC ACTTCCTCTTATACGGAGAGCAGAGTTCAGTTGTTGGCTGCAAGAAAGTGTTTGCCATCGTGTCCAAGATGAAGTGAGCTCCTTGAATGAATCCAGTTAT CTAGAACACATTTTCTTACTTCTGACCGGAAGACAACTGGATGCAGCTGTGGAAATGGCTGCTTCTAGAGGGGATGTAAGACTGGCATGTTTGTTGAGTC AGGCTGGTGGATTGAATCATGCTGACATTGCACGGCAGCTTGATCTTTGGAGGTCAAATGGCCTGGACTTCAATTTCATTGAGAAGGAGAGAGTAAGACT TTATGAGTTGCTTTCTGGCAATATTCATGGTGCTTTGCATGATTTAAAAATTGATTGGAAGAGGTTCTTAGGGTTACTGATGTGGTATCAAATGCCACCT CACACGCCATTGCCCATCATTTTTCAAACCTATCAGCTCCTTTTTGTCAATGGTAAGGCCCCATATCCTCTCCCAATTTATATTGATGAAGGGCCAGTAG ATGCAGATGTGCATTTTTCAGAGAAACACTTTGATCTCTCATACTATCTCATGCTTCTTCATGCTAATGGCGAGGGTGAATTTAGCGCTTTGAAGACCAT GCTTAGTGCCTTCTCATCAACACATGATCCACTTGATTATCATATGATCTGGCATCAGCGAGCGGTGTTAGAAGCAGTTGGCATTTTCACTTCTAAGGAT CTACAAGTTCTAGACATGGGACTTGTTTCTCAGCTCCTGTGTATTGGGCAGTGCCATTGGGCCATATATGTGGTCCTTCACATGCCTCAGTGTGATGATT ATCCATATCTCCATGCTACTGTTATCCGAGAAATTTTGTTTCAATACTGTGAAACATGGTGTTCTGATGAATCACAACAACGATTTATTGAGAACCTTGA CATTCCATTATCATGGTTGCACGAAGCTATGGCGGTTTATTTCAGTTACCACGGGGATCTCTCAAAGGCCCTTGAGCACTATCTTGAATGTGCAAATTGG CAAAAGGCTCATTCTATTTTTGTAACTTCAGTTGCTCATAAATTATTTTTGTCAGCTGACCACTCAGAGATTTGGAGGCTTGCAATTGCAATGGAGGATC ATAAATCTGAAATTGCAAATTGGGACCTGGGAGCTGGAATTTACATATCATTCTATTCGATAAAAAATTCATTTCAGGATGACACCAGTACCATGAGTGA ACTGGATTCTATCGAGAGCAAAAATTCTGCCTGCAGAGACTTCCTTGATCATCTTAAGGACTCTTTAGATGTTTTGCGGGACCAATTACCAATGGATGCA AGGGTAGCGTATTCAAAGATGGCAGAGGAGATCTCAGAATTGCTTCTATCTGATCCTGATATAAGAGAGGGGTCAACACGAGATGCTCAGTTAAGCTGCT TTGACACTGTTTTGAGAGCTCCAATTCCTGAAGACCTCCGCTCAAATCATTTGCAGGATGCCGTCTCTCTCTTTACATGTTATCTTTCAGAGATGGCTGC CTAG
AA sequence Show only first row Show all	>Potri.003G180100.1 pacid=42784528 polypeptide=Potri.003G180100.1.p locus=Potri.003G180100 ID=Potri.003G180100.1.v4.1 annot-version=v4.1 MASPSLLPVAGSSNEIPSIRSNLSFGTSCELDFEVETLNSEGQYKKRRTSLKSEPRCEDFRMVEALLPTLRSVDYYMEPCLMDLAAGEVVDPGYCSRVLD FTVGRFGYGRVKFLGKTDVRRLNLDQIVKFNRHEVIVYEDENAKPMVGQGLNKPAEVSLTLKLKLLDFNKGRINDVVEKLRESMERQGAEFISFDPVIGE WKFLVCHFSRFGLSGDDEEDITMDDAAEVQDPAEMKGGEIVDMDEETPEEVEANEPVLYHSLPAHLGLDPVRMNEMRTWMFPDDEEEVVEDLIGLRQKFP YNKESIGSPLQNSTQRMSHRASSPVMRKTPLALLEYKPGSFDSSSPGTILLAQQHKGLTSKMMKGVGFTLNLEHETPISGSHSCNVVDAGLFMGRSFRVG WGPNGVLVHSGAPVGGNNSQRFLSSIIHVEKVALDKVVRDENNKSRKELVDFSFDSPLNLHKAINRETKEVEIGSFKLKLQKVVSNRLMLSEICRSYIDI VERQLEVPWLSSSARLVLMHQVMIWELIKVLFSERENSGQSKSVGADNEEDMMQDLKESSLEVDQEALPLIRRAEFSCWLQESVCHRVQDEVSSLNESSY LEHIFLLLTGRQLDAAVEMAASRGDVRLACLLSQAGGLNHADIARQLDLWRSNGLDFNFIEKERVRLYELLSGNIHGALHDLKIDWKRFLGLLMWYQMPP HTPLPIIFQTYQLLFVNGKAPYPLPIYIDEGPVDADVHFSEKHFDLSYYLMLLHANGEGEFSALKTMLSAFSSTHDPLDYHMIWHQRAVLEAVGIFTSKD LQVLDMGLVSQLLCIGQCHWAIYVVLHMPQCDDYPYLHATVIREILFQYCETWCSDESQQRFIENLDIPLSWLHEAMAVYFSYHGDLSKALEHYLECANW QKAHSIFVTSVAHKLFLSADHSEIWRLAIAMEDHKSEIANWDLGAGIYISFYSIKNSFQDDTSTMSELDSIESKNSACRDFLDHLKDSLDVLRDQLPMDA RVAYSKMAEEISELLLSDPDIREGSTRDAQLSCFDTVLRAPIPEDLRSNHLQDAVSLFTCYLSEMAA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G80680		NUP96, SAR3, MO...	PRECOCIOUS, MODIFIER OF SNC1,3...		Potri.003G180100 [exp]	0	1	PRE.1
AT1G09620			ATP binding;leucine-tRNA ligas...		Potri.004G226700 [exp]	1.00	0.8709
AT1G20220			Alba DNA/RNA-binding protein (...		Potri.002G066100 [exp]	1.73	0.8368
AT1G77550			tubulin-tyrosine ligases;tubul...		Potri.006G141900 [exp]	2.82	0.8344
AT5G12290		DGS1	dgd1 suppressor 1 (.1)		Potri.009G022200 [exp]	6.92	0.7967
AT2G41500		EMB2776, LIS	LACHESIS, WD-40 repeat family ...		Potri.006G045800 [exp]	7.34	0.8537
AT1G52980		AtNug2	nuclear/nucleolar GTPase 2, GT...		Potri.001G402500 [exp]	9.48	0.7696
AT1G49540		ELP2, AtELP2	Elongator subunit 2, elongator...		Potri.010G119600 [exp]	14.49	0.7730
AT5G48620			Disease resistance protein (CC...		Potri.014G005300 [exp]	16.91	0.7632
AT5G53390			O-acyltransferase (WSD1-like) ...		Potri.012G014200 [exp]	18.43	0.8016
AT5G19750			Peroxisomal membrane 22 kDa (M...		Potri.006G032500 [exp]	19.44	0.7961

Compare expression of checked genes

Potri.003G180100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.